Wall clock time and date at job start Mon Mar 30 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.46974 * 2 1 4 4 C 1.52990 * 115.55321 * 294.93767 * 3 2 1 5 5 N 1.46503 * 109.46929 * 294.24570 * 4 3 2 6 6 C 1.39855 * 119.99877 * 183.45663 * 5 4 3 7 7 C 1.39596 * 119.84057 * 359.97438 * 6 5 4 8 8 C 1.38059 * 120.55230 * 180.02562 * 7 6 5 9 9 C 1.38739 * 120.22101 * 0.02562 * 8 7 6 10 10 N 1.38858 * 120.16463 * 179.97438 * 9 8 7 11 11 C 1.41566 * 119.66963 * 0.02562 * 9 8 7 12 12 C 1.41030 * 120.26367 * 179.97438 * 11 9 8 13 13 H 1.07994 * 120.00039 * 27.60523 * 12 11 9 14 14 C 1.39890 * 119.99577 * 207.60674 * 12 11 9 15 15 N 1.30900 * 119.99901 * 14.34922 * 14 12 11 16 16 Si 1.86803 * 119.99703 * 194.34624 * 14 12 11 17 17 H 1.48498 * 109.46678 * 60.00284 * 16 14 12 18 18 H 1.48504 * 109.46761 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47128 * 299.99988 * 16 14 12 20 20 C 1.38007 * 119.84121 * 180.02562 * 6 5 4 21 21 C 1.53003 * 117.49642 * 80.60917 * 3 2 1 22 22 C 1.53006 * 117.49747 * 149.26511 * 3 2 1 23 23 H 1.09002 * 109.47432 * 65.70585 * 1 2 3 24 24 H 1.09001 * 109.47253 * 185.70691 * 1 2 3 25 25 H 1.08999 * 109.47257 * 305.70179 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00335 * 2 1 3 27 27 H 1.09002 * 109.47322 * 120.00330 * 2 1 3 28 28 H 1.09006 * 109.47204 * 174.25037 * 4 3 2 29 29 H 1.08998 * 109.47264 * 54.24874 * 4 3 2 30 30 H 0.96991 * 120.00323 * 3.45862 * 5 4 3 31 31 H 1.08001 * 119.72535 * 0.02562 * 7 6 5 32 32 H 1.08003 * 119.89214 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99701 * 180.02562 * 10 9 8 34 34 H 0.97003 * 119.99800 * 0.03078 * 10 9 8 35 35 H 0.96997 * 119.99509 * 179.97438 * 15 14 12 36 36 H 1.08006 * 120.11344 * 0.25448 * 20 6 5 37 37 H 1.08997 * 117.50066 * 215.00035 * 21 3 2 38 38 H 1.09006 * 117.49996 * 0.02562 * 21 3 2 39 39 H 1.09002 * 117.49717 * 359.97438 * 22 3 2 40 40 H 1.08998 * 117.49910 * 144.97395 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.7112 2.2587 -1.2516 5 7 2.4151 1.6904 -2.4039 6 6 2.3273 2.3126 -3.6534 7 6 1.5675 3.4746 -3.7988 8 6 1.4702 4.1005 -5.0255 9 6 2.1285 3.5789 -6.1298 10 7 2.0294 4.2091 -7.3632 11 6 2.9007 2.4003 -5.9932 12 6 3.5745 1.8588 -7.1075 13 1 3.8888 2.5041 -7.9144 14 6 3.8357 0.4858 -7.1675 15 7 3.2241 -0.3331 -6.3497 16 14 5.0572 -0.1788 -8.4149 17 1 6.3902 0.4299 -8.1749 18 1 5.1537 -1.6541 -8.2755 19 1 4.5980 0.1594 -9.7860 20 6 2.9913 1.7742 -4.7368 21 6 2.0665 2.1823 1.3390 22 6 3.3752 1.7197 0.6936 23 1 -0.3634 0.4228 -0.9367 24 1 -0.3634 -1.0226 0.1022 25 1 -0.3634 0.5997 0.8345 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0279 3.2914 -1.1055 29 1 0.6366 2.2302 -1.4320 30 1 2.9420 0.8827 -2.3003 31 1 1.0514 3.8874 -2.9446 32 1 0.8791 4.9988 -5.1261 33 1 2.4903 3.8420 -8.1337 34 1 1.4994 5.0164 -7.4541 35 1 3.4050 -1.2851 -6.3917 36 1 3.5742 0.8723 -4.6216 37 1 1.8499 3.2505 1.3282 38 1 1.7212 1.6412 2.2200 39 1 3.8901 0.8745 1.1503 40 1 4.0197 2.4832 0.2580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232956753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:31 Heat of formation + Delta-G solvation = 18.555963 kcal Electronic energy + Delta-G solvation = -19213.162606 eV Core-core repulsion = 16412.749766 eV Total energy + Delta-G solvation = -2800.412841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07322 -39.22073 -36.34491 -35.29736 -33.16728 -32.69157 -31.29241 -29.09268 -26.78174 -26.00409 -24.77157 -23.15041 -22.96481 -21.44047 -19.78326 -18.87030 -17.80890 -17.23991 -16.76550 -16.54306 -16.32322 -15.89680 -15.28338 -14.68319 -14.53409 -14.33776 -14.14672 -13.69999 -13.56646 -13.42461 -13.13133 -12.99149 -12.84264 -12.69881 -12.32772 -12.11232 -12.10674 -11.80761 -11.58852 -11.44883 -11.18765 -10.98077 -10.92521 -10.61127 -9.38483 -9.10938 -8.47329 -7.27463 -6.00510 1.14076 1.41370 1.50548 1.53294 1.66712 2.28224 2.66465 2.93943 3.23785 3.73655 3.78267 3.84136 3.96562 4.01820 4.11094 4.50101 4.59703 4.64631 4.70373 4.74169 4.80449 4.84351 4.93435 5.04900 5.11902 5.24702 5.27931 5.29298 5.32762 5.35492 5.43648 5.46232 5.68832 5.90099 6.07227 6.17589 6.30142 6.58131 6.98766 7.07690 7.15150 7.28694 7.48686 7.67767 8.53449 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.005379 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.768829 B = 5204.348611 C = 6046.258887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.146 4.146 4 C 0.179 3.821 5 N -0.753 5.753 6 C 0.174 3.826 7 C -0.259 4.259 8 C -0.158 4.158 9 C 0.070 3.930 10 N -0.879 5.879 11 C 0.061 3.939 12 C -0.494 4.494 13 H 0.074 0.926 14 C 0.033 3.967 15 N -0.836 5.836 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.261 1.261 20 C -0.223 4.223 21 C -0.148 4.148 22 C -0.173 4.173 23 H 0.036 0.964 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.388 0.612 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.390 0.610 34 H 0.390 0.610 35 H 0.278 0.722 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 1.302 11.166 11.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.146 4.146 4 C 0.055 3.945 5 N -0.386 5.386 6 C 0.073 3.927 7 C -0.283 4.283 8 C -0.183 4.183 9 C -0.033 4.033 10 N -0.423 5.423 11 C 0.056 3.944 12 C -0.525 4.525 13 H 0.092 0.908 14 C -0.179 4.179 15 N -0.464 5.464 16 Si 0.797 3.203 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.185 1.185 20 C -0.247 4.247 21 C -0.185 4.185 22 C -0.210 4.210 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.221 0.779 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.218 0.782 34 H 0.218 0.782 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.037 1.140 11.402 11.639 hybrid contribution 0.611 -0.552 -1.062 1.344 sum -1.426 0.589 10.340 10.455 Atomic orbital electron populations 1.21684 0.95176 1.01852 1.01509 1.20976 0.96325 0.92787 1.01735 1.21611 1.02717 0.96999 0.93271 1.20517 0.95241 0.95078 0.83663 1.44329 1.57828 1.30826 1.05633 1.17634 0.96555 0.92982 0.85497 1.19906 1.10960 1.00005 0.97407 1.20047 1.04609 1.01355 0.92242 1.18045 1.01060 0.96965 0.87180 1.41672 1.60687 1.31781 1.08124 1.17361 0.92555 0.91306 0.93194 1.19357 1.35069 0.93235 1.04864 0.90832 1.26560 0.96255 0.97053 0.98068 1.69958 1.35904 1.04543 1.35969 0.85369 0.78934 0.77166 0.78820 1.19027 1.20005 1.18499 1.20448 1.08721 1.04043 0.91521 1.23071 1.00046 1.00729 0.94660 1.23051 0.90626 1.03654 1.03676 0.94448 0.92086 0.91482 0.93337 0.90353 0.93901 0.93944 0.77923 0.87780 0.87150 0.78209 0.78212 0.91147 0.88619 0.88375 0.86804 0.87755 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.63 71.98 0.69 -2.53 16 2 C -0.08 -1.88 5.73 30.59 0.18 -1.71 16 3 C -0.15 -3.56 1.55 -52.18 -0.08 -3.64 16 4 C 0.18 5.70 4.61 86.38 0.40 6.10 16 5 N -0.75 -29.77 5.65 -339.44 -1.92 -31.69 16 6 C 0.17 8.37 6.64 38.13 0.25 8.62 16 7 C -0.26 -11.87 9.29 22.56 0.21 -11.66 16 8 C -0.16 -7.27 9.86 22.35 0.22 -7.05 16 9 C 0.07 3.44 6.79 38.97 0.26 3.70 16 10 N -0.88 -36.11 8.98 -50.31 -0.45 -36.56 16 11 C 0.06 3.37 5.56 -21.18 -0.12 3.25 16 12 C -0.49 -26.86 8.45 23.35 0.20 -26.66 16 13 H 0.07 3.78 6.74 -2.91 -0.02 3.76 16 14 C 0.03 1.71 5.19 85.23 0.44 2.16 16 15 N -0.84 -45.57 10.96 21.82 0.24 -45.33 16 16 Si 0.97 39.76 29.58 68.60 2.03 41.79 16 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 18 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 C -0.22 -12.14 8.49 22.81 0.19 -11.94 16 21 C -0.15 -2.81 9.94 30.62 0.30 -2.50 16 22 C -0.17 -3.82 9.94 30.62 0.30 -3.52 16 23 H 0.04 0.99 7.24 -2.39 -0.02 0.97 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.05 1.33 7.57 -2.39 -0.02 1.31 16 27 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 28 H 0.04 1.39 7.71 -2.38 -0.02 1.37 16 29 H 0.04 1.41 7.03 -2.39 -0.02 1.39 16 30 H 0.39 15.18 7.92 -92.71 -0.73 14.45 16 31 H 0.10 4.26 6.69 -2.91 -0.02 4.25 16 32 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 33 H 0.39 15.85 7.08 -92.71 -0.66 15.19 16 34 H 0.39 13.23 8.83 -92.71 -0.82 12.41 16 35 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 36 H 0.10 5.51 6.25 -2.91 -0.02 5.50 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -61.32 324.54 2.21 -59.11 By element: Atomic # 1 Polarization: 61.21 SS G_CDS: -1.14 Total: 60.07 kcal Atomic # 6 Polarization: -50.84 SS G_CDS: 3.46 Total: -47.38 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -2.13 Total: -113.59 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 2.03 Total: 41.79 kcal Total: -61.32 2.21 -59.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232956753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.668 kcal (2) G-P(sol) polarization free energy of solvation -61.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds