Wall clock time and date at job start Mon Mar 30 2020 07:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 115.55015 * 2 1 4 4 C 1.53005 * 117.50283 * 214.29204 * 2 1 3 5 5 C 1.52994 * 117.50092 * 145.66661 * 2 1 3 6 6 H 1.09003 * 117.50277 * 214.98349 * 5 2 1 7 7 C 1.53001 * 117.49757 * 359.97438 * 5 2 1 8 8 N 1.46500 * 109.47086 * 184.91220 * 7 5 2 9 9 C 1.39857 * 119.99829 * 179.97438 * 8 7 5 10 10 C 1.39605 * 119.84105 * 0.02562 * 9 8 7 11 11 C 1.38051 * 120.55035 * 179.97438 * 10 9 8 12 12 C 1.38736 * 120.21897 * 0.02562 * 11 10 9 13 13 N 1.38872 * 120.16109 * 179.97438 * 12 11 10 14 14 C 1.41558 * 119.67808 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.27114 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99772 * 25.45737 * 15 14 12 17 17 C 1.39886 * 120.00099 * 205.45696 * 15 14 12 18 18 N 1.30904 * 119.99800 * 15.15885 * 17 15 14 19 19 Si 1.86800 * 120.00018 * 195.15272 * 17 15 14 20 20 H 1.48495 * 109.46843 * 60.00452 * 19 17 15 21 21 H 1.48504 * 109.46798 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47361 * 300.00113 * 19 17 15 23 23 C 1.38003 * 119.83809 * 179.72447 * 9 8 7 24 24 H 1.08994 * 109.47539 * 274.32945 * 1 2 3 25 25 H 1.09003 * 109.47018 * 34.33462 * 1 2 3 26 26 H 1.09006 * 109.46885 * 154.32644 * 1 2 3 27 27 H 1.09000 * 109.47399 * 205.66894 * 3 2 1 28 28 H 1.09001 * 109.47295 * 325.67100 * 3 2 1 29 29 H 1.09005 * 109.47064 * 85.66797 * 3 2 1 30 30 H 1.09000 * 117.49608 * 145.02293 * 4 2 1 31 31 H 1.08994 * 117.49457 * 359.97438 * 4 2 1 32 32 H 1.09004 * 109.47076 * 304.90906 * 7 5 2 33 33 H 1.08994 * 109.47489 * 64.90717 * 7 5 2 34 34 H 0.96998 * 120.00401 * 359.97438 * 8 7 5 35 35 H 1.08000 * 119.72069 * 359.96863 * 10 9 8 36 36 H 1.08000 * 119.88770 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00046 * 0.02562 * 13 12 11 38 38 H 0.97000 * 119.99776 * 179.97438 * 13 12 11 39 39 H 0.96996 * 119.99863 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.11662 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2364 -1.1206 0.7654 6 1 3.1715 -0.8746 1.2687 7 6 1.3588 -2.1552 1.4728 8 7 2.2060 -3.0707 2.2411 9 6 1.6258 -4.1084 2.9777 10 6 0.2390 -4.2691 2.9779 11 6 -0.3491 -5.2887 3.6992 12 6 0.4347 -6.1664 4.4341 13 7 -0.1582 -7.1913 5.1598 14 6 1.8418 -6.0115 4.4415 15 6 2.6506 -6.8968 5.1837 16 1 2.2993 -7.8944 5.4025 17 6 3.9077 -6.4829 5.6365 18 7 4.2162 -5.2107 5.6391 19 14 5.1462 -7.7456 6.2375 20 1 5.4556 -8.6968 5.1400 21 1 6.3912 -7.0553 6.6606 22 1 4.5763 -8.4881 7.3903 23 6 2.4274 -4.9723 3.6957 24 1 -0.3634 0.0776 1.0246 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3633 -0.9263 -0.4453 27 1 3.1822 1.3088 -0.4451 28 1 1.5809 2.0743 -0.5795 29 1 2.2765 1.7417 1.0248 30 1 3.1716 -0.8755 -1.2679 31 1 1.6113 -1.8591 -1.2673 32 1 0.6690 -1.6468 2.1464 33 1 0.7930 -2.7195 0.7315 34 1 3.1693 -2.9571 2.2391 35 1 -0.3788 -3.5901 2.4090 36 1 -1.4230 -5.4034 3.6915 37 1 -1.1226 -7.2951 5.1533 38 1 0.3921 -7.8038 5.6724 39 1 5.0878 -4.9237 5.9534 40 1 3.5001 -4.8481 3.6890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232972355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:25 Heat of formation + Delta-G solvation = 35.011719 kcal Electronic energy + Delta-G solvation = -18911.640253 eV Core-core repulsion = 16111.940988 eV Total energy + Delta-G solvation = -2799.699265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.86255 -37.71824 -34.96064 -33.42447 -31.77519 -29.43540 -29.33895 -27.80378 -26.99651 -24.89516 -24.30130 -21.52038 -20.61880 -19.62839 -18.66639 -17.02938 -16.08810 -15.46189 -15.19148 -15.00617 -14.60610 -14.14012 -14.05045 -13.52640 -13.42515 -12.74473 -12.52639 -12.33728 -12.24016 -11.99359 -11.83992 -11.71102 -11.34890 -11.29747 -11.08735 -10.97976 -10.86835 -10.35870 -10.10627 -9.89297 -9.55713 -9.44992 -9.27508 -9.02675 -7.70883 -7.18459 -6.57632 -5.49227 -4.03811 2.94906 3.14034 3.17021 3.34391 3.51844 3.68544 4.05493 4.39832 4.71175 4.81821 4.87184 4.95617 5.09071 5.45653 5.50043 5.55789 5.56682 5.79905 5.83980 5.86710 5.89967 5.92576 5.98408 6.08234 6.24555 6.27126 6.40220 6.43301 6.67129 7.15775 7.19292 7.35681 7.53062 7.74429 7.92313 8.04611 8.16355 8.49359 8.79964 8.94455 8.98315 9.03885 9.29356 9.37746 10.40826 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.004620 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.740825 B = 6059.662163 C = 7018.559282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.171 4.171 5 C -0.151 4.151 6 H 0.105 0.895 7 C 0.173 3.827 8 N -0.761 5.761 9 C 0.178 3.822 10 C -0.256 4.256 11 C -0.152 4.152 12 C 0.084 3.916 13 N -0.889 5.889 14 C 0.095 3.905 15 C -0.464 4.464 16 H 0.070 0.930 17 C 0.076 3.924 18 N -0.802 5.802 19 Si 0.902 3.098 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.201 4.201 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.275 0.725 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 7.736 -8.115 11.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.127 4.127 3 C -0.171 4.171 4 C -0.207 4.207 5 C -0.169 4.169 6 H 0.123 0.877 7 C 0.047 3.953 8 N -0.396 5.396 9 C 0.079 3.921 10 C -0.280 4.280 11 C -0.177 4.177 12 C -0.017 4.017 13 N -0.432 5.432 14 C 0.090 3.910 15 C -0.495 4.495 16 H 0.088 0.912 17 C -0.139 4.139 18 N -0.428 5.428 19 Si 0.728 3.272 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.194 1.194 23 C -0.226 4.226 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.220 0.780 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.086 0.914 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.624 8.039 -8.154 11.747 hybrid contribution 0.847 -0.693 0.538 1.220 sum -1.777 7.346 -7.616 10.729 Atomic orbital electron populations 1.21345 0.92080 1.01823 1.02087 1.21566 0.94946 0.91160 1.05008 1.21347 0.99760 0.94135 1.01840 1.23317 1.02073 1.01036 0.94321 1.22661 1.01252 0.99248 0.93786 0.87670 1.20487 0.92249 0.89077 0.93461 1.44316 1.07153 1.32832 1.55341 1.17523 0.91819 0.89114 0.93641 1.19604 0.92205 1.04402 1.11768 1.19694 0.96177 0.98573 1.03241 1.17857 0.92168 0.92823 0.98858 1.41806 1.07243 1.35710 1.58441 1.16963 0.88533 0.93406 0.92094 1.19105 1.00044 0.99559 1.30834 0.91178 1.25744 0.98667 0.95313 0.94225 1.69872 1.21378 1.15148 1.36442 0.86479 0.79726 0.81424 0.79602 1.19174 1.20625 1.19375 1.20528 0.98738 1.00113 1.03201 0.91957 0.92421 0.92259 0.92622 0.92289 0.92218 0.89127 0.88764 0.93323 0.93608 0.77955 0.89819 0.89823 0.80139 0.78370 0.91443 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.86 37.15 0.33 -0.90 16 2 C -0.13 -1.42 2.70 -154.51 -0.42 -1.83 16 3 C -0.11 -1.09 9.85 37.16 0.37 -0.72 16 4 C -0.17 -1.98 9.47 -26.73 -0.25 -2.24 16 5 C -0.15 -2.01 5.57 -90.62 -0.50 -2.52 16 6 H 0.11 1.42 8.04 -51.93 -0.42 1.00 16 7 C 0.17 2.83 4.27 -4.04 -0.02 2.81 16 8 N -0.76 -15.16 5.74 -58.64 -0.34 -15.50 16 9 C 0.18 4.25 6.64 -83.77 -0.56 3.70 16 10 C -0.26 -5.98 9.31 -39.14 -0.36 -6.34 16 11 C -0.15 -3.58 9.86 -39.47 -0.39 -3.97 16 12 C 0.08 2.07 6.79 -83.22 -0.56 1.51 16 13 N -0.89 -18.56 8.98 32.75 0.29 -18.26 16 14 C 0.10 2.57 5.58 -106.66 -0.60 1.98 16 15 C -0.46 -12.36 8.50 -37.91 -0.32 -12.69 16 16 H 0.07 1.77 6.67 -52.48 -0.35 1.42 16 17 C 0.08 1.95 5.18 -17.33 -0.09 1.86 16 18 N -0.80 -21.23 10.89 55.55 0.60 -20.63 16 19 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 23 C -0.20 -5.34 8.50 -38.75 -0.33 -5.67 16 24 H 0.06 0.68 7.83 -51.93 -0.41 0.28 16 25 H 0.06 0.52 7.92 -51.93 -0.41 0.10 16 26 H 0.06 0.63 7.90 -51.93 -0.41 0.22 16 27 H 0.05 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.95 8.05 -51.93 -0.42 0.54 16 31 H 0.09 1.10 7.94 -51.93 -0.41 0.69 16 32 H 0.05 0.83 7.57 -51.93 -0.39 0.44 16 33 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 34 H 0.39 7.40 8.41 -40.82 -0.34 7.05 16 35 H 0.08 1.78 6.69 -52.49 -0.35 1.43 16 36 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 38 H 0.39 7.93 7.04 -40.82 -0.29 7.65 16 39 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 40 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -28.54 324.63 -9.37 -37.91 By element: Atomic # 1 Polarization: 28.57 SS G_CDS: -6.08 Total: 22.48 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.71 Total: -25.02 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.56 Total: -54.39 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.54 -9.37 -37.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232972355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.924 kcal (2) G-P(sol) polarization free energy of solvation -28.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds