Wall clock time and date at job start Mon Mar 30 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 115.55015 * 2 1 4 4 C 1.53005 * 117.50283 * 214.29204 * 2 1 3 5 5 C 1.52994 * 117.50092 * 145.66661 * 2 1 3 6 6 H 1.09003 * 117.50277 * 214.98349 * 5 2 1 7 7 C 1.53001 * 117.49757 * 359.97438 * 5 2 1 8 8 N 1.46500 * 109.47086 * 184.91220 * 7 5 2 9 9 C 1.39857 * 119.99829 * 179.97438 * 8 7 5 10 10 C 1.39605 * 119.84105 * 0.02562 * 9 8 7 11 11 C 1.38051 * 120.55035 * 179.97438 * 10 9 8 12 12 C 1.38736 * 120.21897 * 0.02562 * 11 10 9 13 13 N 1.38872 * 120.16109 * 179.97438 * 12 11 10 14 14 C 1.41558 * 119.67808 * 0.02562 * 12 11 10 15 15 C 1.41025 * 120.27114 * 180.02562 * 14 12 11 16 16 H 1.08005 * 119.99772 * 25.45737 * 15 14 12 17 17 C 1.39886 * 120.00099 * 205.45696 * 15 14 12 18 18 N 1.30904 * 119.99800 * 15.15885 * 17 15 14 19 19 Si 1.86800 * 120.00018 * 195.15272 * 17 15 14 20 20 H 1.48495 * 109.46843 * 60.00452 * 19 17 15 21 21 H 1.48504 * 109.46798 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47361 * 300.00113 * 19 17 15 23 23 C 1.38003 * 119.83809 * 179.72447 * 9 8 7 24 24 H 1.08994 * 109.47539 * 274.32945 * 1 2 3 25 25 H 1.09003 * 109.47018 * 34.33462 * 1 2 3 26 26 H 1.09006 * 109.46885 * 154.32644 * 1 2 3 27 27 H 1.09000 * 109.47399 * 205.66894 * 3 2 1 28 28 H 1.09001 * 109.47295 * 325.67100 * 3 2 1 29 29 H 1.09005 * 109.47064 * 85.66797 * 3 2 1 30 30 H 1.09000 * 117.49608 * 145.02293 * 4 2 1 31 31 H 1.08994 * 117.49457 * 359.97438 * 4 2 1 32 32 H 1.09004 * 109.47076 * 304.90906 * 7 5 2 33 33 H 1.08994 * 109.47489 * 64.90717 * 7 5 2 34 34 H 0.96998 * 120.00401 * 359.97438 * 8 7 5 35 35 H 1.08000 * 119.72069 * 359.96863 * 10 9 8 36 36 H 1.08000 * 119.88770 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00046 * 0.02562 * 13 12 11 38 38 H 0.97000 * 119.99776 * 179.97438 * 13 12 11 39 39 H 0.96996 * 119.99863 * 179.97438 * 18 17 15 40 40 H 1.07995 * 120.11662 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2365 -1.1212 -0.7646 5 6 2.2364 -1.1206 0.7654 6 1 3.1715 -0.8746 1.2687 7 6 1.3588 -2.1552 1.4728 8 7 2.2060 -3.0707 2.2411 9 6 1.6258 -4.1084 2.9777 10 6 0.2390 -4.2691 2.9779 11 6 -0.3491 -5.2887 3.6992 12 6 0.4347 -6.1664 4.4341 13 7 -0.1582 -7.1913 5.1598 14 6 1.8418 -6.0115 4.4415 15 6 2.6506 -6.8968 5.1837 16 1 2.2993 -7.8944 5.4025 17 6 3.9077 -6.4829 5.6365 18 7 4.2162 -5.2107 5.6391 19 14 5.1462 -7.7456 6.2375 20 1 5.4556 -8.6968 5.1400 21 1 6.3912 -7.0553 6.6606 22 1 4.5763 -8.4881 7.3903 23 6 2.4274 -4.9723 3.6957 24 1 -0.3634 0.0776 1.0246 25 1 -0.3633 0.8486 -0.5796 26 1 -0.3633 -0.9263 -0.4453 27 1 3.1822 1.3088 -0.4451 28 1 1.5809 2.0743 -0.5795 29 1 2.2765 1.7417 1.0248 30 1 3.1716 -0.8755 -1.2679 31 1 1.6113 -1.8591 -1.2673 32 1 0.6690 -1.6468 2.1464 33 1 0.7930 -2.7195 0.7315 34 1 3.1693 -2.9571 2.2391 35 1 -0.3788 -3.5901 2.4090 36 1 -1.4230 -5.4034 3.6915 37 1 -1.1226 -7.2951 5.1533 38 1 0.3921 -7.8038 5.6724 39 1 5.0878 -4.9237 5.9534 40 1 3.5001 -4.8481 3.6890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232972355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:24 Heat of formation + Delta-G solvation = 18.812607 kcal Electronic energy + Delta-G solvation = -18912.342700 eV Core-core repulsion = 16111.940988 eV Total energy + Delta-G solvation = -2800.401712 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06339 -39.36504 -36.60476 -35.32600 -33.40474 -31.29833 -30.50028 -28.88566 -28.26729 -26.74017 -25.83772 -23.18614 -21.92558 -21.43228 -19.68301 -18.89139 -17.77442 -17.24908 -16.68274 -16.49867 -16.25573 -15.46035 -15.15211 -14.76800 -14.58322 -14.35301 -14.14559 -13.69112 -13.63738 -13.35908 -13.11169 -13.05578 -12.88999 -12.80037 -12.68917 -12.27603 -12.10858 -11.91159 -11.75778 -11.57048 -11.18612 -10.92949 -10.72003 -10.46203 -9.39761 -9.13673 -8.48737 -7.30030 -6.00575 1.13374 1.41298 1.50449 1.53179 1.66286 2.27617 2.65512 2.92052 3.06526 3.71535 3.78008 3.87905 3.92773 3.98517 4.20757 4.37079 4.56995 4.61700 4.78229 4.83218 4.86247 4.90863 4.92935 5.06305 5.07444 5.10506 5.23408 5.24798 5.30053 5.36091 5.44387 5.48715 5.67355 5.89262 6.06795 6.17477 6.28725 6.57156 6.97328 7.06530 7.13772 7.26838 7.47847 7.67456 8.51610 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.004620 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.740825 B = 6059.662163 C = 7018.559282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.114 4.114 3 C -0.114 4.114 4 C -0.164 4.164 5 C -0.170 4.170 6 H 0.102 0.898 7 C 0.177 3.823 8 N -0.759 5.759 9 C 0.172 3.828 10 C -0.260 4.260 11 C -0.157 4.157 12 C 0.069 3.931 13 N -0.879 5.879 14 C 0.061 3.939 15 C -0.493 4.493 16 H 0.075 0.925 17 C 0.033 3.967 18 N -0.834 5.834 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.227 4.227 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.389 0.611 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.154 8.218 -8.866 12.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.114 4.114 3 C -0.171 4.171 4 C -0.201 4.201 5 C -0.188 4.188 6 H 0.120 0.880 7 C 0.053 3.947 8 N -0.393 5.393 9 C 0.072 3.928 10 C -0.284 4.284 11 C -0.182 4.182 12 C -0.033 4.033 13 N -0.423 5.423 14 C 0.056 3.944 15 C -0.524 4.524 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.462 5.462 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.184 1.184 23 C -0.252 4.252 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.123 0.877 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.108 8.533 -8.917 12.728 hybrid contribution 0.905 -0.771 0.714 1.387 sum -2.203 7.762 -8.204 11.507 Atomic orbital electron populations 1.21393 0.91561 1.02591 1.02050 1.21719 0.95399 0.91504 1.02801 1.21382 1.00297 0.93262 1.02133 1.23384 1.02766 1.01144 0.92795 1.22515 1.01245 1.00235 0.94826 0.88026 1.20534 0.92261 0.88969 0.92938 1.44432 1.07662 1.32327 1.54856 1.17652 0.92221 0.89508 0.93455 1.19910 0.92140 1.04698 1.11674 1.20042 0.97594 0.98026 1.02497 1.18028 0.91769 0.93951 0.99540 1.41676 1.08196 1.34715 1.57705 1.17363 0.90038 0.94139 0.92867 1.19390 1.01292 0.99915 1.31808 0.90700 1.26587 1.00145 0.97173 0.94086 1.69963 1.21999 1.16981 1.37264 0.85354 0.77118 0.78625 0.79116 1.18981 1.19949 1.18444 1.20504 0.98115 1.01638 1.04957 0.92585 0.90445 0.92575 0.92021 0.90632 0.92433 0.87804 0.88853 0.94004 0.93729 0.77831 0.87738 0.87061 0.78185 0.78198 0.91066 0.88326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.27 8.86 71.98 0.64 -1.63 16 2 C -0.11 -2.33 2.70 -52.18 -0.14 -2.47 16 3 C -0.11 -1.90 9.85 71.98 0.71 -1.19 16 4 C -0.16 -3.52 9.47 30.60 0.29 -3.23 16 5 C -0.17 -4.37 5.57 -10.79 -0.06 -4.43 16 6 H 0.10 2.69 8.04 -2.39 -0.02 2.67 16 7 C 0.18 5.73 4.27 86.38 0.37 6.10 16 8 N -0.76 -30.61 5.74 -339.43 -1.95 -32.55 16 9 C 0.17 8.37 6.64 38.13 0.25 8.62 16 10 C -0.26 -12.01 9.31 22.56 0.21 -11.80 16 11 C -0.16 -7.23 9.86 22.34 0.22 -7.01 16 12 C 0.07 3.42 6.79 38.97 0.26 3.68 16 13 N -0.88 -36.05 8.98 -50.31 -0.45 -36.50 16 14 C 0.06 3.38 5.58 -21.18 -0.12 3.26 16 15 C -0.49 -26.80 8.50 23.35 0.20 -26.60 16 16 H 0.07 3.83 6.67 -2.91 -0.02 3.81 16 17 C 0.03 1.70 5.18 85.23 0.44 2.14 16 18 N -0.83 -45.44 10.89 21.82 0.24 -45.20 16 19 Si 0.98 39.62 29.59 68.60 2.03 41.65 16 20 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 C -0.23 -12.48 8.50 22.81 0.19 -12.28 16 24 H 0.06 1.14 7.83 -2.39 -0.02 1.12 16 25 H 0.08 1.17 7.92 -2.39 -0.02 1.15 16 26 H 0.06 1.10 7.90 -2.38 -0.02 1.08 16 27 H 0.06 0.96 7.90 -2.39 -0.02 0.94 16 28 H 0.07 1.03 7.92 -2.39 -0.02 1.01 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.10 1.96 8.05 -2.39 -0.02 1.94 16 31 H 0.09 2.03 7.94 -2.39 -0.02 2.01 16 32 H 0.04 1.41 7.57 -2.38 -0.02 1.39 16 33 H 0.04 1.45 7.67 -2.39 -0.02 1.44 16 34 H 0.39 15.25 8.41 -92.71 -0.78 14.48 16 35 H 0.10 4.30 6.69 -2.91 -0.02 4.28 16 36 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.39 13.19 8.83 -92.71 -0.82 12.37 16 38 H 0.39 15.79 7.04 -92.71 -0.65 15.14 16 39 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 40 H 0.10 5.70 6.15 -2.91 -0.02 5.68 16 Total: -1.00 -61.84 324.63 2.15 -59.69 By element: Atomic # 1 Polarization: 60.94 SS G_CDS: -1.19 Total: 59.76 kcal Atomic # 6 Polarization: -50.31 SS G_CDS: 3.47 Total: -46.84 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -2.16 Total: -114.25 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -61.84 2.15 -59.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232972355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.505 kcal (2) G-P(sol) polarization free energy of solvation -61.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds