Wall clock time and date at job start Mon Mar 30 2020 07:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46758 * 2 1 4 4 C 1.53003 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54841 * 29.33285 * 4 3 2 6 6 C 1.53067 * 117.49205 * 243.59452 * 4 3 2 7 7 C 1.52995 * 59.98790 * 252.51581 * 6 4 3 8 8 H 1.09005 * 117.49465 * 107.50044 * 7 6 4 9 9 N 1.46494 * 117.50138 * 252.49877 * 7 6 4 10 10 C 1.39851 * 119.99843 * 224.02142 * 9 7 6 11 11 C 1.39601 * 119.84211 * 359.45049 * 10 9 7 12 12 C 1.38060 * 120.55248 * 179.75823 * 11 10 9 13 13 C 1.38740 * 120.21728 * 0.51901 * 12 11 10 14 14 N 1.38858 * 120.16248 * 179.72167 * 13 12 11 15 15 C 1.41558 * 119.67139 * 359.74196 * 13 12 11 16 16 C 1.41030 * 120.26421 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00174 * 333.64326 * 16 15 13 18 18 C 1.39891 * 119.99988 * 153.64326 * 16 15 13 19 19 N 1.30898 * 120.00050 * 343.97958 * 18 16 15 20 20 Si 1.86799 * 119.99875 * 163.98408 * 18 16 15 21 21 H 1.48499 * 109.47282 * 59.99811 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47052 * 299.99598 * 20 18 16 24 24 C 1.38006 * 119.84098 * 179.72755 * 10 9 7 25 25 H 1.08999 * 109.47202 * 60.00715 * 1 2 3 26 26 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47432 * 299.99877 * 1 2 3 28 28 H 1.08997 * 109.47432 * 240.00123 * 2 1 3 29 29 H 1.08999 * 109.47202 * 119.99285 * 2 1 3 30 30 H 1.08997 * 109.47049 * 59.99888 * 3 2 1 31 31 H 1.08999 * 109.46680 * 299.99605 * 3 2 1 32 32 H 1.09007 * 117.51247 * 145.04002 * 6 4 3 33 33 H 1.09002 * 117.49614 * 0.02562 * 6 4 3 34 34 H 0.96998 * 120.00478 * 43.74936 * 9 7 6 35 35 H 1.08004 * 119.72181 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.89161 * 180.26078 * 12 11 10 37 37 H 0.97003 * 120.00422 * 180.02562 * 14 13 12 38 38 H 0.97006 * 120.00490 * 0.02562 * 14 13 12 39 39 H 0.97002 * 119.99895 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.11484 * 359.95154 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0402 0.5853 -0.4808 6 6 4.2760 2.0467 1.2170 7 6 4.2764 2.7946 -0.1176 8 1 3.6511 3.6840 -0.1963 9 7 5.5334 2.8376 -0.8687 10 6 5.9581 4.0350 -1.4532 11 6 5.1760 5.1846 -1.3286 12 6 5.5836 6.3756 -1.8955 13 6 6.7735 6.4396 -2.6061 14 7 7.1795 7.6367 -3.1807 15 6 7.5713 5.2782 -2.7429 16 6 8.7828 5.3289 -3.4630 17 1 8.9169 6.0635 -4.2433 18 6 9.8109 4.4277 -3.1666 19 7 9.7895 3.7569 -2.0428 20 14 11.2143 4.1817 -4.3746 21 1 11.9181 5.4722 -4.5853 22 1 12.1674 3.1819 -3.8293 23 1 10.6734 3.6957 -5.6695 24 6 7.1457 4.0732 -2.1552 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.2112 1.5865 1.5363 33 1 3.6503 2.4434 2.0165 34 1 6.0732 2.0366 -0.9572 35 1 4.2458 5.1427 -0.7812 36 1 4.9722 7.2595 -1.7890 37 1 8.0117 7.6787 -3.6774 38 1 6.6310 8.4311 -3.0855 39 1 10.5022 3.1317 -1.8375 40 1 7.7465 3.1810 -2.2526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233311022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:56 Heat of formation + Delta-G solvation = 30.923080 kcal Electronic energy + Delta-G solvation = -18693.834395 eV Core-core repulsion = 15893.957833 eV Total energy + Delta-G solvation = -2799.876562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.46565 -37.38920 -34.78359 -33.48093 -33.31100 -30.72629 -29.41732 -27.31486 -25.96736 -24.76443 -22.08911 -21.74855 -20.83154 -20.11862 -19.54961 -17.14493 -16.10952 -15.66026 -15.35539 -15.09414 -14.82698 -14.65797 -13.98379 -13.36617 -12.89896 -12.70563 -12.50220 -12.34160 -12.12364 -11.93976 -11.75474 -11.42452 -11.25943 -11.14154 -10.99525 -10.96566 -10.83408 -10.77486 -10.35996 -9.98583 -9.60898 -9.36772 -9.30311 -9.04666 -7.65432 -7.22821 -6.61269 -5.53594 -4.06624 2.92048 3.12772 3.15580 3.31060 3.42606 4.03511 4.15754 4.27111 4.79512 4.87630 4.99896 5.04718 5.24203 5.33573 5.41918 5.42661 5.56770 5.72434 5.79025 5.88146 5.90672 5.96473 6.04398 6.17462 6.24716 6.28833 6.36920 6.48092 6.65568 7.11530 7.14787 7.31713 7.46952 7.70898 7.86705 7.98160 8.11711 8.45304 8.73290 8.88116 8.93078 8.99321 9.25538 9.33532 10.37781 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.004281 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.570702 B = 6538.537299 C = 7292.756680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.085 4.085 4 C -0.177 4.177 5 H 0.099 0.901 6 C -0.207 4.207 7 C 0.122 3.878 8 H 0.123 0.877 9 N -0.729 5.729 10 C 0.176 3.824 11 C -0.254 4.254 12 C -0.152 4.152 13 C 0.086 3.914 14 N -0.889 5.889 15 C 0.096 3.904 16 C -0.465 4.465 17 H 0.071 0.929 18 C 0.077 3.923 19 N -0.800 5.800 20 Si 0.902 3.098 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.267 1.267 24 C -0.199 4.199 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.389 0.611 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.389 0.611 38 H 0.374 0.626 39 H 0.275 0.725 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.132 -4.438 3.103 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.197 4.197 5 H 0.117 0.883 6 C -0.247 4.247 7 C 0.012 3.988 8 H 0.141 0.859 9 N -0.359 5.359 10 C 0.078 3.922 11 C -0.277 4.277 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.431 5.431 15 C 0.091 3.909 16 C -0.496 4.496 17 H 0.089 0.911 18 C -0.139 4.139 19 N -0.427 5.427 20 Si 0.728 3.272 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.223 0.777 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.217 0.783 38 H 0.199 0.801 39 H 0.086 0.914 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.116 -4.593 3.311 11.593 hybrid contribution 1.069 -0.239 -0.481 1.196 sum -9.047 -4.832 2.829 10.640 Atomic orbital electron populations 1.21786 0.96191 1.01310 1.01741 1.21505 0.95357 0.97096 1.01918 1.21149 0.92693 0.96595 1.01813 1.22876 0.94593 0.99023 1.03239 0.88314 1.23647 1.02201 1.06147 0.92726 1.21389 0.89112 0.94756 0.93503 0.85935 1.43804 1.22239 1.10233 1.59673 1.17491 0.94178 0.84867 0.95660 1.19646 1.01620 0.92865 1.13604 1.19712 0.96731 0.96525 1.04691 1.17863 0.96092 0.86814 1.00737 1.41811 1.27670 1.08858 1.64790 1.16952 0.91987 0.88837 0.93134 1.19096 0.97967 1.15253 1.17295 0.91110 1.25749 0.98998 0.94556 0.94631 1.69870 1.31769 1.20988 1.20077 0.86480 0.80468 0.78748 0.81545 1.19362 1.20618 1.19147 1.20478 0.95727 0.98700 1.07409 0.92758 0.93028 0.92875 0.92110 0.92131 0.92048 0.91699 0.89239 0.89118 0.77733 0.89527 0.89697 0.78328 0.80091 0.91389 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.12 -1.19 5.89 -26.73 -0.16 -1.35 16 3 C -0.08 -0.96 5.50 -26.73 -0.15 -1.10 16 4 C -0.18 -2.36 5.66 -90.58 -0.51 -2.87 16 5 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 6 C -0.21 -2.89 10.11 -26.70 -0.27 -3.16 16 7 C 0.12 1.98 6.04 -67.93 -0.41 1.57 16 8 H 0.12 2.02 5.88 -51.93 -0.31 1.72 16 9 N -0.73 -14.37 5.75 -52.17 -0.30 -14.67 16 10 C 0.18 4.14 6.64 -83.78 -0.56 3.59 16 11 C -0.25 -5.80 9.32 -39.14 -0.36 -6.17 16 12 C -0.15 -3.51 9.86 -39.46 -0.39 -3.90 16 13 C 0.09 2.09 6.79 -83.23 -0.56 1.53 16 14 N -0.89 -18.29 8.98 32.75 0.29 -18.00 16 15 C 0.10 2.57 5.57 -106.66 -0.59 1.97 16 16 C -0.47 -12.25 8.48 -37.91 -0.32 -12.58 16 17 H 0.07 1.77 6.71 -52.49 -0.35 1.42 16 18 C 0.08 1.95 5.16 -17.33 -0.09 1.86 16 19 N -0.80 -21.04 10.97 55.55 0.61 -20.43 16 20 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.20 -5.20 8.49 -38.75 -0.33 -5.53 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.65 7.87 -51.93 -0.41 0.24 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.29 8.14 -51.92 -0.42 0.86 16 33 H 0.09 1.13 8.03 -51.93 -0.42 0.72 16 34 H 0.39 7.39 8.83 -40.82 -0.36 7.03 16 35 H 0.09 1.78 5.85 -52.48 -0.31 1.47 16 36 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.39 7.84 7.06 -40.82 -0.29 7.56 16 38 H 0.37 6.50 8.83 -40.82 -0.36 6.14 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.12 3.17 6.23 -52.49 -0.33 2.85 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -27.89 326.75 -9.90 -37.79 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: -6.06 Total: 23.50 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: -4.34 Total: -27.09 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.60 Total: -53.10 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.89 -9.90 -37.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233311022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.711 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds