Wall clock time and date at job start Mon Mar 30 2020 07:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46758 * 2 1 4 4 C 1.53003 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54841 * 29.33285 * 4 3 2 6 6 C 1.53067 * 117.49205 * 243.59452 * 4 3 2 7 7 C 1.52995 * 59.98790 * 252.51581 * 6 4 3 8 8 H 1.09005 * 117.49465 * 107.50044 * 7 6 4 9 9 N 1.46494 * 117.50138 * 252.49877 * 7 6 4 10 10 C 1.39851 * 119.99843 * 224.02142 * 9 7 6 11 11 C 1.39601 * 119.84211 * 359.45049 * 10 9 7 12 12 C 1.38060 * 120.55248 * 179.75823 * 11 10 9 13 13 C 1.38740 * 120.21728 * 0.51901 * 12 11 10 14 14 N 1.38858 * 120.16248 * 179.72167 * 13 12 11 15 15 C 1.41558 * 119.67139 * 359.74196 * 13 12 11 16 16 C 1.41030 * 120.26421 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00174 * 333.64326 * 16 15 13 18 18 C 1.39891 * 119.99988 * 153.64326 * 16 15 13 19 19 N 1.30898 * 120.00050 * 343.97958 * 18 16 15 20 20 Si 1.86799 * 119.99875 * 163.98408 * 18 16 15 21 21 H 1.48499 * 109.47282 * 59.99811 * 20 18 16 22 22 H 1.48503 * 109.47233 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47052 * 299.99598 * 20 18 16 24 24 C 1.38006 * 119.84098 * 179.72755 * 10 9 7 25 25 H 1.08999 * 109.47202 * 60.00715 * 1 2 3 26 26 H 1.09007 * 109.46889 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47432 * 299.99877 * 1 2 3 28 28 H 1.08997 * 109.47432 * 240.00123 * 2 1 3 29 29 H 1.08999 * 109.47202 * 119.99285 * 2 1 3 30 30 H 1.08997 * 109.47049 * 59.99888 * 3 2 1 31 31 H 1.08999 * 109.46680 * 299.99605 * 3 2 1 32 32 H 1.09007 * 117.51247 * 145.04002 * 6 4 3 33 33 H 1.09002 * 117.49614 * 0.02562 * 6 4 3 34 34 H 0.96998 * 120.00478 * 43.74936 * 9 7 6 35 35 H 1.08004 * 119.72181 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.89161 * 180.26078 * 12 11 10 37 37 H 0.97003 * 120.00422 * 180.02562 * 14 13 12 38 38 H 0.97006 * 120.00490 * 0.02562 * 14 13 12 39 39 H 0.97002 * 119.99895 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.11484 * 359.95154 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0402 0.5853 -0.4808 6 6 4.2760 2.0467 1.2170 7 6 4.2764 2.7946 -0.1176 8 1 3.6511 3.6840 -0.1963 9 7 5.5334 2.8376 -0.8687 10 6 5.9581 4.0350 -1.4532 11 6 5.1760 5.1846 -1.3286 12 6 5.5836 6.3756 -1.8955 13 6 6.7735 6.4396 -2.6061 14 7 7.1795 7.6367 -3.1807 15 6 7.5713 5.2782 -2.7429 16 6 8.7828 5.3289 -3.4630 17 1 8.9169 6.0635 -4.2433 18 6 9.8109 4.4277 -3.1666 19 7 9.7895 3.7569 -2.0428 20 14 11.2143 4.1817 -4.3746 21 1 11.9181 5.4722 -4.5853 22 1 12.1674 3.1819 -3.8293 23 1 10.6734 3.6957 -5.6695 24 6 7.1457 4.0732 -2.1552 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.2112 1.5865 1.5363 33 1 3.6503 2.4434 2.0165 34 1 6.0732 2.0366 -0.9572 35 1 4.2458 5.1427 -0.7812 36 1 4.9722 7.2595 -1.7890 37 1 8.0117 7.6787 -3.6774 38 1 6.6310 8.4311 -3.0855 39 1 10.5022 3.1317 -1.8375 40 1 7.7465 3.1810 -2.2526 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233311022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:55 Heat of formation + Delta-G solvation = 15.680171 kcal Electronic energy + Delta-G solvation = -18694.495377 eV Core-core repulsion = 15893.957833 eV Total energy + Delta-G solvation = -2800.537544 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98765 -38.88080 -36.13811 -35.32529 -34.54535 -32.28820 -31.31205 -28.46136 -27.52262 -26.57126 -23.59522 -22.80930 -22.25777 -21.30324 -21.24071 -18.94726 -17.82291 -17.33146 -16.86369 -16.46627 -16.35064 -15.91326 -15.26176 -14.54290 -14.25484 -14.18941 -13.99799 -13.89004 -13.62754 -13.27006 -13.18854 -12.89797 -12.80295 -12.63859 -12.46965 -12.08949 -12.01199 -11.89262 -11.78476 -11.60180 -11.15316 -10.92942 -10.89401 -10.72145 -9.26437 -9.12141 -8.49962 -7.28808 -6.00531 1.12609 1.40947 1.49633 1.52207 1.63622 2.27129 2.77464 2.87956 3.09405 3.76696 3.83785 3.94397 3.98427 4.15616 4.26286 4.32550 4.43648 4.61937 4.66575 4.79059 4.92279 4.93101 4.98308 5.01904 5.12122 5.21714 5.23082 5.34356 5.39603 5.42205 5.45243 5.53569 5.65515 5.89687 6.05669 6.15303 6.28349 6.56347 6.96417 7.05472 7.12408 7.22195 7.46539 7.67223 8.50795 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023752 B = 0.004281 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.570702 B = 6538.537299 C = 7292.756680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.155 4.155 5 H 0.096 0.904 6 C -0.194 4.194 7 C 0.089 3.911 8 H 0.122 0.878 9 N -0.730 5.730 10 C 0.173 3.827 11 C -0.257 4.257 12 C -0.157 4.157 13 C 0.070 3.930 14 N -0.879 5.879 15 C 0.061 3.939 16 C -0.493 4.493 17 H 0.075 0.925 18 C 0.033 3.967 19 N -0.834 5.834 20 Si 0.975 3.025 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.265 1.265 24 C -0.225 4.225 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.389 0.611 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.390 0.610 38 H 0.391 0.609 39 H 0.279 0.721 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 -4.509 3.486 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.175 4.175 5 H 0.114 0.886 6 C -0.234 4.234 7 C -0.018 4.018 8 H 0.139 0.861 9 N -0.360 5.360 10 C 0.073 3.927 11 C -0.281 4.281 12 C -0.181 4.181 13 C -0.032 4.032 14 N -0.423 5.423 15 C 0.056 3.944 16 C -0.524 4.524 17 H 0.093 0.907 18 C -0.180 4.180 19 N -0.462 5.462 20 Si 0.797 3.203 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.190 1.190 24 C -0.250 4.250 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.129 0.871 34 H 0.222 0.778 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.380 -4.656 3.712 12.843 hybrid contribution 1.327 -0.228 -0.523 1.445 sum -10.052 -4.884 3.189 11.622 Atomic orbital electron populations 1.21771 0.95054 1.02033 1.02014 1.21484 0.96345 0.95966 1.01914 1.21174 0.90854 0.97761 1.02222 1.22901 0.95893 0.96801 1.01934 0.88593 1.23673 1.02364 1.04829 0.92495 1.21601 0.88310 0.96519 0.95402 0.86055 1.43839 1.23448 1.08990 1.59686 1.17600 0.93488 0.86549 0.95064 1.19991 1.02288 0.92512 1.13273 1.20075 0.96529 0.97675 1.03842 1.18040 0.96469 0.87394 1.01298 1.41684 1.27926 1.08465 1.64201 1.17346 0.92973 0.89961 0.94109 1.19368 0.98647 1.16448 1.17985 0.90715 1.26579 1.01434 0.93906 0.96060 1.69962 1.32834 1.21683 1.21679 0.85366 0.77164 0.78917 0.78838 1.18456 1.20006 1.19008 1.20447 0.96948 0.98188 1.09415 0.92830 0.92139 0.92276 0.92546 0.91768 0.90922 0.92013 0.89799 0.87096 0.77814 0.87100 0.86900 0.78207 0.78153 0.91091 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 71.98 0.71 -1.51 16 2 C -0.12 -2.09 5.89 30.60 0.18 -1.91 16 3 C -0.08 -1.67 5.50 30.60 0.17 -1.50 16 4 C -0.16 -3.87 5.66 -10.77 -0.06 -3.94 16 5 H 0.10 2.48 8.07 -2.39 -0.02 2.46 16 6 C -0.19 -5.05 10.11 30.62 0.31 -4.74 16 7 C 0.09 2.81 6.04 44.99 0.27 3.08 16 8 H 0.12 3.82 5.88 -2.38 -0.01 3.81 16 9 N -0.73 -29.00 5.75 -318.98 -1.83 -30.83 16 10 C 0.17 8.26 6.64 38.14 0.25 8.51 16 11 C -0.26 -11.56 9.32 22.56 0.21 -11.35 16 12 C -0.16 -7.07 9.86 22.35 0.22 -6.85 16 13 C 0.07 3.42 6.79 38.97 0.26 3.68 16 14 N -0.88 -35.67 8.98 -50.31 -0.45 -36.12 16 15 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 16 C -0.49 -26.66 8.48 23.36 0.20 -26.46 16 17 H 0.07 3.81 6.71 -2.91 -0.02 3.79 16 18 C 0.03 1.70 5.16 85.23 0.44 2.14 16 19 N -0.83 -45.27 10.97 21.82 0.24 -45.03 16 20 Si 0.97 39.55 29.59 68.60 2.03 41.58 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 24 C -0.23 -12.23 8.49 22.81 0.19 -12.04 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.33 7.87 -2.39 -0.02 1.31 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.11 2.44 8.03 -2.39 -0.02 2.42 16 34 H 0.39 15.16 8.83 -92.71 -0.82 14.34 16 35 H 0.11 4.36 5.85 -2.91 -0.02 4.34 16 36 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.39 15.67 7.06 -92.71 -0.65 15.02 16 38 H 0.39 13.02 8.83 -92.70 -0.82 12.20 16 39 H 0.28 13.95 8.30 -92.71 -0.77 13.18 16 40 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 Total: -1.00 -60.78 326.75 2.00 -58.77 By element: Atomic # 1 Polarization: 62.50 SS G_CDS: -1.23 Total: 61.27 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 3.24 Total: -49.64 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -2.05 Total: -111.99 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -60.78 2.00 -58.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233311022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.454 kcal (2) G-P(sol) polarization free energy of solvation -60.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds