Wall clock time and date at job start Mon Mar 30 2020 07:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53003 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55690 * 330.68733 * 4 3 2 6 6 C 1.52995 * 117.49999 * 116.37100 * 4 3 2 7 7 C 1.52995 * 117.50252 * 184.99730 * 4 3 2 8 8 H 1.08995 * 117.51957 * 145.01913 * 7 4 3 9 9 N 1.46501 * 117.49614 * 359.97438 * 7 4 3 10 10 C 1.39857 * 120.00115 * 154.98431 * 9 7 4 11 11 C 1.39602 * 119.83799 * 0.02562 * 10 9 7 12 12 C 1.38047 * 120.54808 * 179.97438 * 11 10 9 13 13 C 1.38742 * 120.22469 * 0.25129 * 12 11 10 14 14 N 1.38861 * 120.16633 * 179.74797 * 13 12 11 15 15 C 1.41559 * 119.66580 * 359.51987 * 13 12 11 16 16 C 1.41034 * 120.26437 * 180.20490 * 15 13 12 17 17 H 1.07994 * 120.00000 * 333.90143 * 16 15 13 18 18 C 1.39889 * 119.99933 * 153.89256 * 16 15 13 19 19 N 1.30901 * 119.99915 * 343.97871 * 18 16 15 20 20 Si 1.86801 * 119.99795 * 163.97569 * 18 16 15 21 21 H 1.48497 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46781 * 120.00096 * 20 18 16 23 23 H 1.48496 * 109.46972 * 240.00021 * 20 18 16 24 24 C 1.38003 * 119.84040 * 180.02562 * 10 9 7 25 25 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47686 * 300.00281 * 1 2 3 27 27 H 1.09005 * 109.47457 * 59.99982 * 1 2 3 28 28 H 1.08994 * 109.47131 * 239.99980 * 2 1 3 29 29 H 1.09003 * 109.47287 * 119.99495 * 2 1 3 30 30 H 1.08994 * 109.47211 * 60.00029 * 3 2 1 31 31 H 1.09003 * 109.46705 * 299.99851 * 3 2 1 32 32 H 1.09002 * 117.50344 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.51792 * 214.96801 * 6 4 3 34 34 H 0.97004 * 120.00314 * 334.98905 * 9 7 4 35 35 H 1.08004 * 119.72551 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.88737 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00066 * 0.02562 * 14 13 12 38 38 H 0.97002 * 119.99786 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00057 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.11175 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0404 0.5851 0.4805 6 6 4.2758 2.0456 -1.2167 7 6 4.2764 2.7946 0.1175 8 1 5.2117 2.8269 0.6762 9 7 3.4361 3.9900 0.2220 10 6 3.9340 5.1433 0.8368 11 6 5.2325 5.1517 1.3494 12 6 5.7390 6.2821 1.9587 13 6 4.9583 7.4233 2.0729 14 7 5.4671 8.5580 2.6907 15 6 3.6420 7.4267 1.5520 16 6 2.8388 8.5812 1.6572 17 1 3.0129 9.2893 2.4539 18 6 1.8169 8.8093 0.7296 19 7 1.7962 8.1447 -0.3980 20 14 0.4818 10.0621 1.1000 21 1 0.7317 10.6731 2.4302 22 1 0.4943 11.1212 0.0591 23 1 -0.8416 9.3885 1.1049 24 6 3.1394 6.2674 0.9339 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9563 -0.8900 32 1 3.6503 2.4427 -2.0162 33 1 5.2109 1.5853 -1.5358 34 1 2.5343 3.9818 -0.1353 35 1 5.8459 4.2664 1.2685 36 1 6.7449 6.2767 2.3519 37 1 6.3707 8.5543 3.0434 38 1 4.9193 9.3547 2.7688 39 1 1.0874 8.3025 -1.0410 40 1 2.1354 6.2573 0.5358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233433748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:58 Heat of formation + Delta-G solvation = 31.544916 kcal Electronic energy + Delta-G solvation = -18938.172699 eV Core-core repulsion = 16138.323101 eV Total energy + Delta-G solvation = -2799.849597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.54663 -37.38714 -34.58620 -33.47628 -33.32425 -30.66613 -29.41969 -27.27334 -26.10322 -24.77646 -21.98724 -21.83107 -20.78053 -20.24575 -19.20305 -17.12004 -16.17547 -15.67573 -15.37259 -15.03679 -14.78602 -14.65099 -13.96236 -13.48550 -12.79529 -12.65785 -12.45966 -12.20773 -12.16540 -11.95644 -11.77373 -11.44361 -11.25947 -11.12153 -11.00059 -10.89770 -10.78923 -10.68167 -10.33755 -9.95172 -9.56137 -9.37083 -9.28485 -9.05973 -7.65225 -7.22761 -6.61590 -5.53236 -4.06584 2.89507 3.13998 3.18305 3.30205 3.42515 4.03558 4.20984 4.31017 4.77586 4.82289 5.05219 5.12100 5.31838 5.37855 5.41809 5.43982 5.60731 5.80863 5.86176 5.90756 5.98210 6.02757 6.04602 6.21521 6.29690 6.33376 6.37094 6.51784 6.65499 7.11693 7.14960 7.31982 7.47146 7.71131 7.86925 7.98434 8.12137 8.45741 8.73673 8.88677 8.93341 8.99413 9.25640 9.33672 10.37561 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005370 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.956579 B = 5212.466524 C = 6458.099885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.177 4.177 5 H 0.101 0.899 6 C -0.209 4.209 7 C 0.120 3.880 8 H 0.123 0.877 9 N -0.727 5.727 10 C 0.176 3.824 11 C -0.254 4.254 12 C -0.152 4.152 13 C 0.086 3.914 14 N -0.889 5.889 15 C 0.096 3.904 16 C -0.464 4.464 17 H 0.072 0.928 18 C 0.077 3.923 19 N -0.801 5.801 20 Si 0.901 3.099 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.275 1.275 24 C -0.199 4.199 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.390 0.610 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.374 0.626 38 H 0.389 0.611 39 H 0.274 0.726 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 -9.991 0.038 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.125 4.125 4 C -0.197 4.197 5 H 0.119 0.881 6 C -0.249 4.249 7 C 0.011 3.989 8 H 0.141 0.859 9 N -0.357 5.357 10 C 0.078 3.922 11 C -0.277 4.277 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.431 5.431 15 C 0.091 3.909 16 C -0.495 4.495 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.427 5.427 20 Si 0.726 3.274 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.200 1.200 24 C -0.223 4.223 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.223 0.777 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.199 0.801 38 H 0.217 0.783 39 H 0.085 0.915 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.061 -10.113 -0.181 10.115 hybrid contribution -0.774 0.766 -0.103 1.094 sum -0.836 -9.347 -0.284 9.389 Atomic orbital electron populations 1.21789 0.96170 1.01200 1.01959 1.21487 0.95455 0.97052 1.01628 1.21084 0.92849 0.96461 1.02128 1.22843 0.95091 0.98502 1.03252 0.88138 1.23595 1.02295 1.05882 0.93089 1.21361 0.96230 0.83522 0.97795 0.85940 1.43769 1.15547 1.09674 1.66755 1.17495 0.93184 0.86017 0.95494 1.19645 0.95713 0.98359 1.13995 1.19711 0.97751 0.93366 1.06835 1.17863 0.93443 0.87544 1.02662 1.41811 1.16920 1.14512 1.69892 1.16962 0.88974 0.92780 0.92227 1.19165 1.13215 1.06102 1.11055 0.91031 1.25747 0.97925 0.96351 0.93895 1.69888 1.30066 1.37234 1.05547 0.86388 0.80994 0.80569 0.79415 1.18706 1.20337 1.20028 1.20475 0.99936 0.90886 1.11020 0.93098 0.92676 0.92803 0.92272 0.92251 0.91381 0.92137 0.89154 0.89241 0.77652 0.89508 0.89715 0.80094 0.78327 0.91507 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.15 0.37 -1.16 16 2 C -0.12 -1.26 5.89 -26.73 -0.16 -1.42 16 3 C -0.09 -1.12 4.41 -26.73 -0.12 -1.23 16 4 C -0.18 -2.34 5.74 -90.62 -0.52 -2.86 16 5 H 0.10 1.20 8.07 -51.93 -0.42 0.78 16 6 C -0.21 -2.90 10.10 -26.73 -0.27 -3.17 16 7 C 0.12 1.95 6.30 -67.93 -0.43 1.52 16 8 H 0.12 2.00 5.88 -51.93 -0.31 1.69 16 9 N -0.73 -14.18 5.52 -52.17 -0.29 -14.47 16 10 C 0.18 4.12 6.64 -83.77 -0.56 3.57 16 11 C -0.25 -5.77 9.32 -39.14 -0.36 -6.14 16 12 C -0.15 -3.50 9.86 -39.47 -0.39 -3.89 16 13 C 0.09 2.09 6.79 -83.23 -0.56 1.52 16 14 N -0.89 -18.27 8.98 32.75 0.29 -17.98 16 15 C 0.10 2.55 5.57 -106.66 -0.59 1.96 16 16 C -0.46 -12.22 8.48 -37.90 -0.32 -12.55 16 17 H 0.07 1.80 6.70 -52.49 -0.35 1.44 16 18 C 0.08 1.94 5.16 -17.33 -0.09 1.85 16 19 N -0.80 -21.03 10.97 55.55 0.61 -20.42 16 20 Si 0.90 18.98 29.59 -169.99 -5.03 13.95 16 21 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 24 C -0.20 -5.19 8.49 -38.75 -0.33 -5.52 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.79 7.79 -51.93 -0.40 0.39 16 32 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.39 7.38 7.84 -40.82 -0.32 7.06 16 35 H 0.09 1.77 5.86 -52.48 -0.31 1.47 16 36 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.37 6.50 8.83 -40.82 -0.36 6.14 16 38 H 0.39 7.84 7.05 -40.82 -0.29 7.55 16 39 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.12 3.16 6.23 -52.48 -0.33 2.84 16 LS Contribution 324.68 15.07 4.89 4.89 Total: -1.00 -27.79 324.68 -9.87 -37.66 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -6.02 Total: 23.88 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -4.33 Total: -27.52 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.62 Total: -52.87 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.79 -9.87 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233433748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.206 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds