Wall clock time and date at job start Mon Mar 30 2020 07:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53003 * 109.47246 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55690 * 330.68733 * 4 3 2 6 6 C 1.52995 * 117.49999 * 116.37100 * 4 3 2 7 7 C 1.52995 * 117.50252 * 184.99730 * 4 3 2 8 8 H 1.08995 * 117.51957 * 145.01913 * 7 4 3 9 9 N 1.46501 * 117.49614 * 359.97438 * 7 4 3 10 10 C 1.39857 * 120.00115 * 154.98431 * 9 7 4 11 11 C 1.39602 * 119.83799 * 0.02562 * 10 9 7 12 12 C 1.38047 * 120.54808 * 179.97438 * 11 10 9 13 13 C 1.38742 * 120.22469 * 0.25129 * 12 11 10 14 14 N 1.38861 * 120.16633 * 179.74797 * 13 12 11 15 15 C 1.41559 * 119.66580 * 359.51987 * 13 12 11 16 16 C 1.41034 * 120.26437 * 180.20490 * 15 13 12 17 17 H 1.07994 * 120.00000 * 333.90143 * 16 15 13 18 18 C 1.39889 * 119.99933 * 153.89256 * 16 15 13 19 19 N 1.30901 * 119.99915 * 343.97871 * 18 16 15 20 20 Si 1.86801 * 119.99795 * 163.97569 * 18 16 15 21 21 H 1.48497 * 109.46981 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46781 * 120.00096 * 20 18 16 23 23 H 1.48496 * 109.46972 * 240.00021 * 20 18 16 24 24 C 1.38003 * 119.84040 * 180.02562 * 10 9 7 25 25 H 1.08996 * 109.47289 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47686 * 300.00281 * 1 2 3 27 27 H 1.09005 * 109.47457 * 59.99982 * 1 2 3 28 28 H 1.08994 * 109.47131 * 239.99980 * 2 1 3 29 29 H 1.09003 * 109.47287 * 119.99495 * 2 1 3 30 30 H 1.08994 * 109.47211 * 60.00029 * 3 2 1 31 31 H 1.09003 * 109.46705 * 299.99851 * 3 2 1 32 32 H 1.09002 * 117.50344 * 0.02562 * 6 4 3 33 33 H 1.08999 * 117.51792 * 214.96801 * 6 4 3 34 34 H 0.97004 * 120.00314 * 334.98905 * 9 7 4 35 35 H 1.08004 * 119.72551 * 359.97438 * 11 10 9 36 36 H 1.08005 * 119.88737 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00066 * 0.02562 * 14 13 12 38 38 H 0.97002 * 119.99786 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00057 * 179.97438 * 19 18 16 40 40 H 1.08007 * 120.11175 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0404 0.5851 0.4805 6 6 4.2758 2.0456 -1.2167 7 6 4.2764 2.7946 0.1175 8 1 5.2117 2.8269 0.6762 9 7 3.4361 3.9900 0.2220 10 6 3.9340 5.1433 0.8368 11 6 5.2325 5.1517 1.3494 12 6 5.7390 6.2821 1.9587 13 6 4.9583 7.4233 2.0729 14 7 5.4671 8.5580 2.6907 15 6 3.6420 7.4267 1.5520 16 6 2.8388 8.5812 1.6572 17 1 3.0129 9.2893 2.4539 18 6 1.8169 8.8093 0.7296 19 7 1.7962 8.1447 -0.3980 20 14 0.4818 10.0621 1.1000 21 1 0.7317 10.6731 2.4302 22 1 0.4943 11.1212 0.0591 23 1 -0.8416 9.3885 1.1049 24 6 3.1394 6.2674 0.9339 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6765 1.9563 -0.8900 32 1 3.6503 2.4427 -2.0162 33 1 5.2109 1.5853 -1.5358 34 1 2.5343 3.9818 -0.1353 35 1 5.8459 4.2664 1.2685 36 1 6.7449 6.2767 2.3519 37 1 6.3707 8.5543 3.0434 38 1 4.9193 9.3547 2.7688 39 1 1.0874 8.3025 -1.0410 40 1 2.1354 6.2573 0.5358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233433748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:57 Heat of formation + Delta-G solvation = 16.463205 kcal Electronic energy + Delta-G solvation = -18938.826691 eV Core-core repulsion = 16138.323101 eV Total energy + Delta-G solvation = -2800.503589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.03769 -38.92157 -35.99716 -35.31585 -34.56613 -32.25797 -31.31063 -28.37071 -27.77664 -26.59982 -23.55695 -22.82769 -22.23454 -21.73735 -20.67055 -18.88627 -17.89216 -17.32025 -16.91041 -16.43635 -16.28570 -15.97870 -15.34111 -14.55717 -14.31820 -14.18581 -14.07198 -13.87927 -13.41827 -13.27613 -13.20107 -12.97514 -12.88295 -12.68145 -12.53602 -12.07220 -11.90134 -11.84853 -11.80782 -11.62980 -11.14327 -10.94574 -10.88666 -10.67814 -9.25822 -9.11671 -8.50276 -7.27785 -6.00391 1.11300 1.40882 1.49928 1.54443 1.62795 2.27013 2.81758 2.88436 3.10289 3.72681 3.78525 3.94885 4.05923 4.10614 4.26725 4.34699 4.43420 4.62337 4.63939 4.79156 4.88030 4.93584 4.98969 5.02934 5.07512 5.19004 5.23502 5.34889 5.37113 5.40463 5.45090 5.51230 5.65945 5.90333 6.06297 6.15899 6.29187 6.56976 6.96931 7.06249 7.13187 7.23076 7.46977 7.67492 8.50948 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.005370 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.956579 B = 5212.466524 C = 6458.099885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.088 4.088 4 C -0.154 4.154 5 H 0.123 0.877 6 C -0.196 4.196 7 C 0.086 3.914 8 H 0.124 0.876 9 N -0.726 5.726 10 C 0.173 3.827 11 C -0.256 4.256 12 C -0.157 4.157 13 C 0.070 3.930 14 N -0.879 5.879 15 C 0.061 3.939 16 C -0.493 4.493 17 H 0.075 0.925 18 C 0.033 3.967 19 N -0.835 5.835 20 Si 0.974 3.026 21 H -0.258 1.258 22 H -0.272 1.272 23 H -0.272 1.272 24 C -0.225 4.225 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.388 0.612 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.391 0.609 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.503 -11.254 0.208 11.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.126 4.126 4 C -0.174 4.174 5 H 0.141 0.859 6 C -0.235 4.235 7 C -0.022 4.022 8 H 0.141 0.859 9 N -0.356 5.356 10 C 0.073 3.927 11 C -0.280 4.280 12 C -0.181 4.181 13 C -0.032 4.032 14 N -0.423 5.423 15 C 0.056 3.944 16 C -0.524 4.524 17 H 0.093 0.907 18 C -0.179 4.179 19 N -0.463 5.463 20 Si 0.796 3.204 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.250 4.250 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.222 0.778 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.089 0.911 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.494 -11.406 -0.008 11.417 hybrid contribution -0.863 1.040 -0.174 1.363 sum -0.370 -10.366 -0.182 10.374 Atomic orbital electron populations 1.21795 0.95800 1.02093 1.01508 1.21450 0.95795 0.95364 1.02462 1.21084 0.92690 0.97894 1.00912 1.22914 0.95222 0.97050 1.02202 0.85908 1.23612 1.03182 1.04586 0.92112 1.21594 0.96646 0.83623 1.00321 0.85893 1.43779 1.15875 1.09790 1.66164 1.17603 0.93347 0.86539 0.95178 1.19994 0.95571 0.99305 1.13130 1.20077 0.98849 0.92899 1.06306 1.18039 0.93108 0.89077 1.03007 1.41684 1.17721 1.13556 1.69334 1.17347 0.90407 0.93247 0.93394 1.19424 1.14615 1.06597 1.11743 0.90741 1.26567 0.99692 0.98299 0.93352 1.69974 1.30969 1.38902 1.06452 0.85280 0.77745 0.77979 0.79357 1.18107 1.19686 1.19723 1.20439 0.99660 0.92315 1.12584 0.91524 0.93341 0.93120 0.91305 0.91438 0.93103 0.92974 0.89949 0.87038 0.77834 0.86995 0.86932 0.78165 0.78224 0.91121 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.91 71.98 0.71 -2.12 16 2 C -0.11 -2.17 5.89 30.59 0.18 -1.99 16 3 C -0.09 -2.15 4.41 30.60 0.13 -2.01 16 4 C -0.15 -3.75 5.74 -10.80 -0.06 -3.81 16 5 H 0.12 2.50 8.07 -2.39 -0.02 2.48 16 6 C -0.20 -5.02 10.10 30.59 0.31 -4.71 16 7 C 0.09 2.67 6.30 44.99 0.28 2.95 16 8 H 0.12 3.78 5.88 -2.39 -0.01 3.77 16 9 N -0.73 -28.61 5.52 -318.98 -1.76 -30.37 16 10 C 0.17 8.24 6.64 38.13 0.25 8.50 16 11 C -0.26 -11.47 9.32 22.55 0.21 -11.26 16 12 C -0.16 -7.06 9.86 22.35 0.22 -6.84 16 13 C 0.07 3.40 6.79 38.97 0.26 3.67 16 14 N -0.88 -35.70 8.98 -50.31 -0.45 -36.16 16 15 C 0.06 3.36 5.57 -21.18 -0.12 3.24 16 16 C -0.49 -26.66 8.48 23.36 0.20 -26.46 16 17 H 0.07 3.82 6.70 -2.91 -0.02 3.80 16 18 C 0.03 1.73 5.16 85.23 0.44 2.17 16 19 N -0.84 -45.43 10.97 21.82 0.24 -45.19 16 20 Si 0.97 39.63 29.59 68.60 2.03 41.66 16 21 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 22 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 C -0.23 -12.22 8.49 22.81 0.19 -12.03 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.35 7.79 -2.39 -0.02 1.33 16 32 H 0.08 2.27 8.03 -2.39 -0.02 2.25 16 33 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.39 15.20 7.84 -92.70 -0.73 14.47 16 35 H 0.11 4.36 5.86 -2.91 -0.02 4.34 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.39 13.03 8.83 -92.71 -0.82 12.22 16 38 H 0.39 15.69 7.05 -92.71 -0.65 15.04 16 39 H 0.28 13.89 8.30 -92.71 -0.77 13.12 16 40 H 0.10 5.45 6.23 -2.91 -0.02 5.43 16 Total: -1.00 -60.88 324.68 2.14 -58.74 By element: Atomic # 1 Polarization: 63.16 SS G_CDS: -1.13 Total: 62.03 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.22 Total: -50.71 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -1.97 Total: -111.71 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -60.88 2.14 -58.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233433748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.202 kcal (2) G-P(sol) polarization free energy of solvation -60.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds