Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46941 * 2 1 4 4 H 1.08996 * 109.47416 * 53.50239 * 3 2 1 5 5 C 1.50704 * 109.46954 * 173.50514 * 3 2 1 6 6 H 1.07998 * 120.00167 * 114.41309 * 5 3 2 7 7 C 1.37873 * 119.99789 * 294.41133 * 5 3 2 8 8 N 1.31515 * 120.00199 * 351.32074 * 7 5 3 9 9 Si 1.86805 * 120.00197 * 171.32187 * 7 5 3 10 10 H 1.48505 * 109.46530 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47230 * 119.99436 * 9 7 5 12 12 H 1.48500 * 109.47277 * 239.99933 * 9 7 5 13 13 C 1.50701 * 109.47053 * 293.50109 * 3 2 1 14 14 O 1.21254 * 120.00305 * 270.00123 * 13 3 2 15 15 C 1.47168 * 120.00008 * 90.00429 * 13 3 2 16 16 C 1.39882 * 120.16783 * 5.00545 * 15 13 3 17 17 C 1.37862 * 119.82051 * 179.79021 * 16 15 13 18 18 C 1.50693 * 119.91410 * 180.23073 * 17 16 15 19 19 C 1.38430 * 120.17489 * 0.46360 * 17 16 15 20 20 C 1.50698 * 119.82602 * 179.75945 * 19 17 16 21 21 C 1.38383 * 120.34599 * 359.79132 * 19 17 16 22 22 C 1.37904 * 120.17243 * 359.97345 * 21 19 17 23 23 C 1.50709 * 120.08642 * 179.97438 * 22 21 19 24 24 H 1.09006 * 109.47296 * 58.75370 * 1 2 3 25 25 H 1.08999 * 109.47227 * 298.75709 * 1 2 3 26 26 H 1.08996 * 109.47374 * 178.75222 * 1 2 3 27 27 H 1.08997 * 109.46820 * 119.99956 * 2 1 3 28 28 H 1.08995 * 109.47102 * 240.00022 * 2 1 3 29 29 H 0.97003 * 120.00550 * 180.02562 * 8 7 5 30 30 H 1.07991 * 120.08704 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.47388 * 270.23342 * 18 17 16 32 32 H 1.08997 * 109.47102 * 30.23238 * 18 17 16 33 33 H 1.09001 * 109.47412 * 150.23497 * 18 17 16 34 34 H 1.08995 * 109.47419 * 270.02579 * 20 19 17 35 35 H 1.08994 * 109.46994 * 30.03111 * 20 19 17 36 36 H 1.09007 * 109.46555 * 150.02501 * 20 19 17 37 37 H 1.08000 * 119.91116 * 179.97438 * 21 19 17 38 38 H 1.08994 * 109.46851 * 262.53344 * 23 22 21 39 39 H 1.09001 * 109.47013 * 22.53455 * 23 22 21 40 40 H 1.08997 * 109.46887 * 142.53653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5848 1.9888 0.8261 5 6 3.5384 1.4455 0.1607 6 1 4.1669 1.8008 -0.6424 7 6 4.1068 0.9948 1.3332 8 7 3.3461 0.7237 2.3711 9 14 5.9577 0.7690 1.4475 10 1 6.5824 1.1407 0.1525 11 1 6.4968 1.6382 2.5241 12 1 6.2651 -0.6505 1.7567 13 6 1.6732 2.1049 -1.3030 14 8 2.4335 2.0505 -2.2459 15 6 0.3922 2.8180 -1.4309 16 6 -0.4402 2.9733 -0.3175 17 6 -1.6366 3.6463 -0.4445 18 6 -2.5325 3.8193 0.7548 19 6 -2.0194 4.1595 -1.6719 20 6 -3.3315 4.8891 -1.8030 21 6 -1.2039 4.0053 -2.7792 22 6 -0.0019 3.3388 -2.6673 23 6 0.8845 3.1716 -3.8747 24 1 -0.3634 0.5331 -0.8786 25 1 -0.3633 0.4944 0.9009 26 1 -0.3634 -1.0274 -0.0224 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.7460 0.4070 3.1962 30 1 -0.1446 2.5703 0.6398 31 1 -3.2190 2.9752 0.8204 32 1 -1.9250 3.8646 1.6586 33 1 -3.1017 4.7433 0.6529 34 1 -4.1182 4.1791 -2.0578 35 1 -3.5729 5.3752 -0.8577 36 1 -3.2521 5.6409 -2.5883 37 1 -1.5097 4.4081 -3.7335 38 1 0.7206 2.1868 -4.3120 39 1 0.6458 3.9400 -4.6099 40 1 1.9282 3.2670 -3.5751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233865015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -36.202538 kcal Electronic energy + Delta-G solvation = -19870.463419 eV Core-core repulsion = 17035.383321 eV Total energy + Delta-G solvation = -2835.080098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93233 -37.92852 -34.56617 -33.71398 -32.34005 -31.41499 -29.12358 -27.81538 -27.23746 -24.91132 -23.56627 -22.16197 -21.75206 -19.69612 -18.26151 -16.43568 -15.98912 -15.37426 -14.73403 -14.60348 -14.44102 -13.92547 -13.69221 -13.40054 -12.89756 -12.85945 -12.70917 -12.53061 -12.51559 -12.10431 -11.88238 -11.66994 -11.60810 -11.34900 -11.12249 -11.02269 -10.87679 -10.69155 -10.60377 -10.10631 -9.97430 -9.80661 -8.99395 -8.40889 -8.37505 -8.19479 -8.03486 -6.07235 -4.07359 1.19184 1.67081 3.20447 3.30835 3.38925 3.46627 4.19381 4.43586 4.88382 4.95609 5.02213 5.15176 5.25363 5.27001 5.41839 5.52094 5.65407 5.74295 5.76958 5.88180 5.93708 6.02372 6.08487 6.13293 6.14272 6.27967 6.31460 6.34045 6.53407 6.58555 6.66836 6.79858 6.83786 6.94189 7.07575 7.12476 7.27213 7.55155 7.68774 7.93354 8.25071 8.71471 8.97989 9.55957 11.02361 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.006095 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.142560 B = 4593.022848 C = 5137.149302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.100 4.100 3 C 0.010 3.990 4 H 0.057 0.943 5 C -0.508 4.508 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.283 1.283 13 C 0.401 3.599 14 O -0.461 6.461 15 C -0.160 4.160 16 C -0.057 4.057 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.067 4.067 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.037 4.037 23 C -0.127 4.127 24 H 0.042 0.958 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.261 0.739 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.879 5.519 -5.292 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.139 4.139 3 C -0.009 4.009 4 H 0.075 0.925 5 C -0.546 4.546 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 C 0.280 3.720 14 O -0.337 6.337 15 C -0.161 4.161 16 C -0.075 4.075 17 C -0.114 4.114 18 C -0.170 4.170 19 C -0.068 4.068 20 C -0.173 4.173 21 C -0.159 4.159 22 C -0.038 4.038 23 C -0.183 4.183 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.467 5.430 -5.602 14.706 hybrid contribution 0.838 -0.182 0.234 0.889 sum -11.629 5.247 -5.368 13.841 Atomic orbital electron populations 1.22054 0.98676 0.99883 1.00633 1.21401 0.92064 0.98226 1.02177 1.19171 0.98015 0.93170 0.90522 0.92517 1.21099 0.90040 1.42712 1.00720 0.91490 1.24922 0.98202 0.95344 0.95299 1.69958 1.35127 1.45467 1.02284 0.86524 0.85592 0.77799 0.78123 1.19565 1.21086 1.20893 1.23285 0.82423 0.75320 0.90942 1.90263 1.50912 1.51534 1.41031 1.20881 0.98508 1.03086 0.93621 1.21602 0.92240 0.94684 0.98994 1.19665 0.96350 1.00544 0.94888 1.20815 0.98728 1.01830 0.95609 1.19856 0.96192 0.97745 0.92961 1.20870 0.94295 0.99548 1.02584 1.20792 0.94637 1.02362 0.98062 1.20233 0.94297 0.94325 0.94897 1.21167 1.02018 1.01106 0.94050 0.93882 0.93080 0.94371 0.89676 0.94180 0.92954 0.84249 0.91421 0.91380 0.91553 0.91246 0.91123 0.91834 0.86291 0.91338 0.93008 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.50 37.16 0.32 -2.63 16 2 C -0.10 -2.32 5.28 -26.73 -0.14 -2.46 16 3 C 0.01 0.25 1.61 -92.92 -0.15 0.10 16 4 H 0.06 1.44 6.24 -51.93 -0.32 1.12 16 5 C -0.51 -14.19 8.28 -34.44 -0.29 -14.47 16 6 H 0.07 1.96 7.10 -52.49 -0.37 1.58 16 7 C 0.06 1.76 5.16 -17.82 -0.09 1.67 16 8 N -0.89 -24.84 12.14 55.43 0.67 -24.16 16 9 Si 0.89 21.53 29.55 -169.99 -5.02 16.51 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.40 9.17 5.68 -30.68 -0.17 8.99 16 14 O -0.46 -11.27 12.81 5.58 0.07 -11.20 16 15 C -0.16 -3.10 4.81 -105.06 -0.51 -3.61 16 16 C -0.06 -1.00 7.28 -39.10 -0.28 -1.28 16 17 C -0.11 -1.67 5.87 -104.69 -0.61 -2.29 16 18 C -0.11 -1.30 9.59 36.00 0.35 -0.95 16 19 C -0.07 -0.92 5.89 -104.50 -0.62 -1.53 16 20 C -0.12 -1.14 9.59 36.00 0.35 -0.80 16 21 C -0.14 -2.05 9.30 -39.65 -0.37 -2.42 16 22 C -0.04 -0.64 5.92 -104.15 -0.62 -1.26 16 23 C -0.13 -2.09 8.90 36.01 0.32 -1.77 16 24 H 0.04 0.79 5.76 -51.93 -0.30 0.49 16 25 H 0.05 0.93 7.28 -51.93 -0.38 0.55 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 2.14 6.76 -51.93 -0.35 1.79 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.14 2.50 5.14 -52.49 -0.27 2.23 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.07 0.63 5.93 -51.93 -0.31 0.32 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 5.93 -51.93 -0.31 0.31 16 36 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 37 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.69 8.03 -51.93 -0.42 0.28 16 40 H 0.10 1.94 5.59 -51.93 -0.29 1.65 16 LS Contribution 314.47 15.07 4.74 4.74 Total: -1.00 -29.53 314.47 -7.89 -37.41 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.83 Total: 1.40 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -2.52 Total: -24.69 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.67 Total: -24.16 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.53 -7.89 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.212 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds