Wall clock time and date at job start Mon Mar 30 2020 06:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46941 * 2 1 4 4 H 1.08996 * 109.47416 * 53.50239 * 3 2 1 5 5 C 1.50704 * 109.46954 * 173.50514 * 3 2 1 6 6 H 1.07998 * 120.00167 * 114.41309 * 5 3 2 7 7 C 1.37873 * 119.99789 * 294.41133 * 5 3 2 8 8 N 1.31515 * 120.00199 * 351.32074 * 7 5 3 9 9 Si 1.86805 * 120.00197 * 171.32187 * 7 5 3 10 10 H 1.48505 * 109.46530 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47230 * 119.99436 * 9 7 5 12 12 H 1.48500 * 109.47277 * 239.99933 * 9 7 5 13 13 C 1.50701 * 109.47053 * 293.50109 * 3 2 1 14 14 O 1.21254 * 120.00305 * 270.00123 * 13 3 2 15 15 C 1.47168 * 120.00008 * 90.00429 * 13 3 2 16 16 C 1.39882 * 120.16783 * 5.00545 * 15 13 3 17 17 C 1.37862 * 119.82051 * 179.79021 * 16 15 13 18 18 C 1.50693 * 119.91410 * 180.23073 * 17 16 15 19 19 C 1.38430 * 120.17489 * 0.46360 * 17 16 15 20 20 C 1.50698 * 119.82602 * 179.75945 * 19 17 16 21 21 C 1.38383 * 120.34599 * 359.79132 * 19 17 16 22 22 C 1.37904 * 120.17243 * 359.97345 * 21 19 17 23 23 C 1.50709 * 120.08642 * 179.97438 * 22 21 19 24 24 H 1.09006 * 109.47296 * 58.75370 * 1 2 3 25 25 H 1.08999 * 109.47227 * 298.75709 * 1 2 3 26 26 H 1.08996 * 109.47374 * 178.75222 * 1 2 3 27 27 H 1.08997 * 109.46820 * 119.99956 * 2 1 3 28 28 H 1.08995 * 109.47102 * 240.00022 * 2 1 3 29 29 H 0.97003 * 120.00550 * 180.02562 * 8 7 5 30 30 H 1.07991 * 120.08704 * 0.02562 * 16 15 13 31 31 H 1.09004 * 109.47388 * 270.23342 * 18 17 16 32 32 H 1.08997 * 109.47102 * 30.23238 * 18 17 16 33 33 H 1.09001 * 109.47412 * 150.23497 * 18 17 16 34 34 H 1.08995 * 109.47419 * 270.02579 * 20 19 17 35 35 H 1.08994 * 109.46994 * 30.03111 * 20 19 17 36 36 H 1.09007 * 109.46555 * 150.02501 * 20 19 17 37 37 H 1.08000 * 119.91116 * 179.97438 * 21 19 17 38 38 H 1.08994 * 109.46851 * 262.53344 * 23 22 21 39 39 H 1.09001 * 109.47013 * 22.53455 * 23 22 21 40 40 H 1.08997 * 109.46887 * 142.53653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5848 1.9888 0.8261 5 6 3.5384 1.4455 0.1607 6 1 4.1669 1.8008 -0.6424 7 6 4.1068 0.9948 1.3332 8 7 3.3461 0.7237 2.3711 9 14 5.9577 0.7690 1.4475 10 1 6.5824 1.1407 0.1525 11 1 6.4968 1.6382 2.5241 12 1 6.2651 -0.6505 1.7567 13 6 1.6732 2.1049 -1.3030 14 8 2.4335 2.0505 -2.2459 15 6 0.3922 2.8180 -1.4309 16 6 -0.4402 2.9733 -0.3175 17 6 -1.6366 3.6463 -0.4445 18 6 -2.5325 3.8193 0.7548 19 6 -2.0194 4.1595 -1.6719 20 6 -3.3315 4.8891 -1.8030 21 6 -1.2039 4.0053 -2.7792 22 6 -0.0019 3.3388 -2.6673 23 6 0.8845 3.1716 -3.8747 24 1 -0.3634 0.5331 -0.8786 25 1 -0.3633 0.4944 0.9009 26 1 -0.3634 -1.0274 -0.0224 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.7460 0.4070 3.1962 30 1 -0.1446 2.5703 0.6398 31 1 -3.2190 2.9752 0.8204 32 1 -1.9250 3.8646 1.6586 33 1 -3.1017 4.7433 0.6529 34 1 -4.1182 4.1791 -2.0578 35 1 -3.5729 5.3752 -0.8577 36 1 -3.2521 5.6409 -2.5883 37 1 -1.5097 4.4081 -3.7335 38 1 0.7206 2.1868 -4.3120 39 1 0.6458 3.9400 -4.6099 40 1 1.9282 3.2670 -3.5751 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233865015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:54 Heat of formation + Delta-G solvation = -50.857521 kcal Electronic energy + Delta-G solvation = -19871.098907 eV Core-core repulsion = 17035.383321 eV Total energy + Delta-G solvation = -2835.715586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.35660 -39.45240 -36.42541 -34.94237 -34.03917 -32.92402 -30.34004 -29.55102 -28.43115 -26.22971 -25.36747 -23.44327 -23.30996 -21.18211 -19.85366 -18.46137 -17.53067 -16.76160 -16.51690 -16.00556 -15.86909 -15.37918 -15.00209 -14.85514 -14.51119 -14.24084 -13.87261 -13.72657 -13.62049 -13.51270 -13.44726 -13.31084 -12.87191 -12.75987 -12.73554 -12.55235 -12.24933 -12.21165 -12.10342 -11.86321 -11.74877 -11.57554 -11.02572 -10.50118 -9.87506 -9.62970 -9.31874 -8.20642 -6.27641 -0.16297 0.45312 1.35843 1.38262 1.50815 1.67469 2.39970 2.84468 3.10500 3.43502 3.83160 3.93563 3.99527 4.24735 4.27935 4.42020 4.47953 4.58976 4.65107 4.70448 4.76432 4.79233 4.83925 4.85799 4.91315 5.00183 5.01771 5.07756 5.17607 5.22803 5.25881 5.30041 5.42792 5.45774 5.56842 5.68809 5.70923 5.72629 5.84979 6.09605 6.21407 6.77607 6.95602 7.38163 8.88216 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.006095 C = 0.005449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.142560 B = 4593.022848 C = 5137.149302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 C 0.007 3.993 4 H 0.044 0.956 5 C -0.535 4.535 6 H 0.043 0.957 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.273 1.273 13 C 0.399 3.601 14 O -0.492 6.492 15 C -0.191 4.191 16 C -0.068 4.068 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.055 4.055 20 C -0.116 4.116 21 C -0.138 4.138 22 C -0.050 4.050 23 C -0.123 4.123 24 H 0.047 0.953 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.026 0.974 29 H 0.266 0.734 30 H 0.124 0.876 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.065 0.935 39 H 0.084 0.916 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 6.747 -5.686 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.012 4.012 4 H 0.062 0.938 5 C -0.573 4.573 6 H 0.061 0.939 7 C -0.175 4.175 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.198 1.198 13 C 0.281 3.719 14 O -0.371 6.371 15 C -0.192 4.192 16 C -0.086 4.086 17 C -0.116 4.116 18 C -0.169 4.169 19 C -0.055 4.055 20 C -0.172 4.172 21 C -0.155 4.155 22 C -0.050 4.050 23 C -0.179 4.179 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.142 0.858 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.253 6.657 -5.979 17.683 hybrid contribution 1.621 -0.502 0.358 1.734 sum -13.631 6.155 -5.621 15.978 Atomic orbital electron populations 1.21895 0.95247 1.01447 1.01202 1.21232 0.95086 0.96716 1.00147 1.19119 0.96237 0.94260 0.91591 0.93783 1.21278 0.91910 1.43656 1.00483 0.93912 1.25566 1.02175 0.94862 0.94872 1.70024 1.36602 1.45442 1.02537 0.85644 0.80802 0.78250 0.77836 1.20309 1.19928 1.19814 1.23289 0.83891 0.75124 0.89627 1.90252 1.52337 1.53008 1.41496 1.20562 0.97486 1.05450 0.95708 1.21540 0.93495 0.95856 0.97724 1.20034 0.95466 0.99273 0.96816 1.20897 0.98449 1.03746 0.93797 1.20384 0.97362 0.95930 0.91857 1.20986 0.92041 0.99948 1.04185 1.21144 0.93298 1.01149 0.99936 1.20406 0.95709 0.94849 0.94073 1.21074 1.00062 1.02095 0.94684 0.93369 0.92423 0.92186 0.92161 0.95523 0.92528 0.85821 0.89987 0.91961 0.88930 0.89456 0.89623 0.90119 0.83049 0.91631 0.89733 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.50 71.98 0.61 -4.76 16 2 C -0.09 -4.50 5.28 30.59 0.16 -4.34 16 3 C 0.01 0.36 1.61 -12.29 -0.02 0.34 16 4 H 0.04 2.38 6.24 -2.39 -0.01 2.37 16 5 C -0.54 -31.56 8.28 25.60 0.21 -31.35 16 6 H 0.04 2.66 7.10 -2.91 -0.02 2.64 16 7 C 0.03 1.43 5.16 84.65 0.44 1.87 16 8 N -0.91 -51.93 12.14 21.45 0.26 -51.67 16 9 Si 0.95 45.29 29.55 68.60 2.03 47.31 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 13 C 0.40 19.28 5.68 28.03 0.16 19.44 16 14 O -0.49 -25.69 12.81 -2.95 -0.04 -25.73 16 15 C -0.19 -7.57 4.81 -20.15 -0.10 -7.67 16 16 C -0.07 -2.37 7.28 22.58 0.16 -2.21 16 17 C -0.12 -3.12 5.87 -19.91 -0.12 -3.23 16 18 C -0.11 -2.21 9.59 71.23 0.68 -1.53 16 19 C -0.06 -1.29 5.89 -19.78 -0.12 -1.41 16 20 C -0.12 -1.63 9.59 71.24 0.68 -0.94 16 21 C -0.14 -3.57 9.30 22.23 0.21 -3.36 16 22 C -0.05 -1.70 5.92 -19.56 -0.12 -1.81 16 23 C -0.12 -4.03 8.90 71.24 0.63 -3.39 16 24 H 0.05 1.78 5.76 -2.38 -0.01 1.77 16 25 H 0.06 2.10 7.28 -2.39 -0.02 2.08 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.06 3.17 6.76 -2.39 -0.02 3.15 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.12 4.60 5.14 -2.91 -0.01 4.59 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.09 1.34 5.93 -2.39 -0.01 1.32 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.00 5.93 -2.39 -0.01 0.98 16 36 H 0.08 0.93 8.08 -2.38 -0.02 0.91 16 37 H 0.15 2.92 8.05 -2.91 -0.02 2.90 16 38 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.12 8.03 -2.39 -0.02 2.10 16 40 H 0.07 2.79 5.59 -2.39 -0.01 2.78 16 Total: -1.00 -67.45 314.47 6.77 -60.68 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 1.03 Total: 13.77 kcal Atomic # 6 Polarization: -47.86 SS G_CDS: 3.49 Total: -44.37 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.26 Total: -51.67 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.04 Total: -25.73 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -67.45 6.77 -60.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233865015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.825 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds