Wall clock time and date at job start Mon Mar 30 2020 06:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 H 1.09005 * 109.46964 * 305.00073 * 3 2 1 5 5 C 1.50700 * 109.47149 * 185.00338 * 3 2 1 6 6 H 1.07998 * 120.00315 * 239.99959 * 5 3 2 7 7 C 1.37877 * 119.99937 * 59.99968 * 5 3 2 8 8 N 1.31517 * 120.00298 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46936 * 119.99979 * 9 7 5 12 12 H 1.48498 * 109.46896 * 240.00000 * 9 7 5 13 13 C 1.50701 * 109.46983 * 65.00346 * 3 2 1 14 14 O 1.21251 * 119.99773 * 95.00512 * 13 3 2 15 15 C 1.47160 * 119.99661 * 274.99564 * 13 3 2 16 16 C 1.39875 * 120.17509 * 354.11713 * 15 13 3 17 17 C 1.37873 * 119.82492 * 180.27799 * 16 15 13 18 18 C 1.50693 * 119.91356 * 179.72189 * 17 16 15 19 19 C 1.38427 * 120.16843 * 359.69542 * 17 16 15 20 20 C 1.50701 * 119.81866 * 180.02562 * 19 17 16 21 21 C 1.38382 * 120.35378 * 0.02562 * 19 17 16 22 22 C 1.37908 * 120.16673 * 0.02562 * 21 19 17 23 23 C 1.50703 * 120.08350 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47032 * 60.00055 * 1 2 3 25 25 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46854 * 300.00041 * 1 2 3 27 27 H 1.09002 * 109.47063 * 240.00464 * 2 1 3 28 28 H 1.09003 * 109.47578 * 120.00132 * 2 1 3 29 29 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.09029 * 359.97438 * 16 15 13 31 31 H 1.08999 * 109.47230 * 269.97561 * 18 17 16 32 32 H 1.09006 * 109.47027 * 29.97734 * 18 17 16 33 33 H 1.08997 * 109.47246 * 149.97254 * 18 17 16 34 34 H 1.08996 * 109.47285 * 269.97570 * 20 19 17 35 35 H 1.08995 * 109.47647 * 29.98179 * 20 19 17 36 36 H 1.09010 * 109.46976 * 149.97936 * 20 19 17 37 37 H 1.07992 * 119.91425 * 179.97438 * 21 19 17 38 38 H 1.09008 * 109.47058 * 97.25491 * 23 22 21 39 39 H 1.09001 * 109.47431 * 217.25639 * 23 22 21 40 40 H 1.09003 * 109.46966 * 337.25762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1473 1.8890 0.6521 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0050 0.8802 -1.3813 10 1 6.5988 1.5454 -0.1938 11 1 6.4962 -0.5188 -1.4629 12 1 6.3999 1.6159 -2.6094 13 6 1.6414 2.1162 1.2878 14 8 2.4158 2.1484 2.2201 15 6 0.3122 2.7353 1.4135 16 6 -0.5366 2.8094 0.3042 17 6 -1.7781 3.3960 0.4287 18 6 -2.6916 3.4826 -0.7666 19 6 -2.1877 3.9052 1.6490 20 6 -3.5465 4.5442 1.7764 21 6 -1.3560 3.8305 2.7525 22 6 -0.1109 3.2476 2.6438 23 6 0.7935 3.1678 3.8466 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0617 -2.9496 30 1 -0.2184 2.4126 -0.6486 31 1 -2.5059 4.4154 -1.2991 32 1 -2.5006 2.6403 -1.4317 33 1 -3.7292 3.4546 -0.4338 34 1 -3.4681 5.6102 1.5633 35 1 -4.2335 4.0816 1.0678 36 1 -3.9209 4.4029 2.7904 37 1 -1.6826 4.2303 3.7011 38 1 0.6995 2.1843 4.3073 39 1 1.8262 3.3263 3.5360 40 1 0.5088 3.9350 4.5668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234028047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:58 Heat of formation + Delta-G solvation = -32.777322 kcal Electronic energy + Delta-G solvation = -19906.414967 eV Core-core repulsion = 17071.483397 eV Total energy + Delta-G solvation = -2834.931570 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.96116 -37.92063 -34.62043 -33.72356 -32.39362 -31.28869 -29.09862 -27.80846 -27.25796 -24.91776 -23.57681 -22.14509 -21.73698 -19.66698 -18.24918 -16.42634 -15.99683 -15.35768 -14.72641 -14.62209 -14.50128 -14.02480 -13.60238 -13.33096 -12.96473 -12.77790 -12.70713 -12.54805 -12.51600 -12.12131 -11.90807 -11.70530 -11.57892 -11.22496 -11.10207 -11.02891 -10.86961 -10.69651 -10.61497 -10.07865 -9.91901 -9.74675 -8.92933 -8.44932 -8.36707 -8.19036 -8.01314 -6.03502 -4.08183 1.18980 1.66769 3.20431 3.30962 3.38745 3.46147 4.19152 4.42915 4.88106 4.95307 5.02050 5.14404 5.24838 5.28241 5.41541 5.51496 5.65162 5.73443 5.77290 5.87462 5.92419 6.01186 6.09790 6.16597 6.17783 6.29774 6.31193 6.38191 6.54610 6.58651 6.66736 6.82948 6.85744 6.95153 7.08305 7.18004 7.26941 7.57485 7.79374 8.01441 8.27304 8.72010 8.97501 9.56416 11.02816 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.006075 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.211503 B = 4607.942444 C = 5182.474345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.108 4.108 3 C 0.011 3.989 4 H 0.051 0.949 5 C -0.505 4.505 6 H 0.068 0.932 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.400 3.600 14 O -0.460 6.460 15 C -0.160 4.160 16 C -0.057 4.057 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.067 4.067 20 C -0.117 4.117 21 C -0.141 4.141 22 C -0.037 4.037 23 C -0.129 4.129 24 H 0.049 0.951 25 H 0.036 0.964 26 H 0.042 0.958 27 H 0.104 0.896 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.140 0.860 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 5.637 4.788 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.146 4.146 3 C -0.008 4.008 4 H 0.069 0.931 5 C -0.543 4.543 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.279 3.721 14 O -0.336 6.336 15 C -0.161 4.161 16 C -0.075 4.075 17 C -0.116 4.116 18 C -0.170 4.170 19 C -0.067 4.067 20 C -0.173 4.173 21 C -0.159 4.159 22 C -0.037 4.037 23 C -0.185 4.185 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.158 0.842 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.087 0.913 39 H 0.122 0.878 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.746 5.564 5.109 14.816 hybrid contribution 0.827 -0.058 -0.213 0.856 sum -11.919 5.506 4.896 14.012 Atomic orbital electron populations 1.22157 0.99023 0.99811 1.00398 1.21477 0.91678 0.98104 1.03339 1.19165 0.97731 0.93383 0.90476 0.93130 1.21153 0.90115 1.37561 1.05442 0.91413 1.24931 0.98398 0.95108 0.95539 1.69863 1.34850 1.38874 1.09588 0.86462 0.85464 0.77726 0.78006 1.19622 1.20973 1.21029 1.23302 0.83431 0.74778 0.90613 1.90256 1.52808 1.49602 1.40916 1.20877 0.98095 1.03432 0.93730 1.21629 0.92135 0.94746 0.98958 1.19659 0.95887 1.01043 0.94982 1.20811 0.98146 1.02486 0.95510 1.19852 0.96077 0.97779 0.93017 1.20871 0.93648 1.00381 1.02400 1.20790 0.94087 1.02821 0.98194 1.20232 0.94229 0.94346 0.94915 1.21190 1.01824 1.01305 0.94180 0.93213 0.94469 0.93901 0.87746 0.94483 0.92961 0.84212 0.91421 0.91423 0.91557 0.91237 0.91134 0.91840 0.86298 0.91345 0.87803 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 8.32 37.16 0.31 -2.70 16 2 C -0.11 -2.52 5.23 -26.73 -0.14 -2.66 16 3 C 0.01 0.28 1.76 -92.92 -0.16 0.11 16 4 H 0.05 1.28 6.53 -51.93 -0.34 0.94 16 5 C -0.50 -14.12 8.33 -34.44 -0.29 -14.40 16 6 H 0.07 1.98 7.03 -52.49 -0.37 1.61 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 8 N -0.89 -24.78 11.29 55.43 0.63 -24.16 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.40 9.15 5.84 -30.69 -0.18 8.98 16 14 O -0.46 -11.29 12.69 5.58 0.07 -11.22 16 15 C -0.16 -3.10 4.70 -105.07 -0.49 -3.60 16 16 C -0.06 -0.98 6.88 -39.10 -0.27 -1.25 16 17 C -0.12 -1.68 5.87 -104.69 -0.61 -2.30 16 18 C -0.11 -1.28 9.59 36.00 0.35 -0.93 16 19 C -0.07 -0.91 5.89 -104.50 -0.62 -1.52 16 20 C -0.12 -1.14 9.59 36.01 0.35 -0.79 16 21 C -0.14 -2.05 9.31 -39.65 -0.37 -2.42 16 22 C -0.04 -0.64 5.92 -104.15 -0.62 -1.26 16 23 C -0.13 -2.12 8.94 36.01 0.32 -1.80 16 24 H 0.05 0.90 6.78 -51.93 -0.35 0.55 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.80 5.48 -51.93 -0.28 0.52 16 27 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 30 H 0.14 2.48 4.82 -52.49 -0.25 2.22 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.61 5.92 -51.93 -0.31 0.30 16 36 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 37 H 0.12 1.43 8.05 -52.49 -0.42 1.01 16 38 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 39 H 0.10 1.97 5.54 -51.93 -0.29 1.68 16 40 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -29.43 311.54 -7.89 -37.31 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.74 Total: 1.79 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -2.52 Total: -24.96 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.63 Total: -24.16 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.07 Total: -11.22 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.43 -7.89 -37.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.534 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds