Wall clock time and date at job start Mon Mar 30 2020 06:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46976 * 2 1 4 4 H 1.09005 * 109.46964 * 305.00073 * 3 2 1 5 5 C 1.50700 * 109.47149 * 185.00338 * 3 2 1 6 6 H 1.07998 * 120.00315 * 239.99959 * 5 3 2 7 7 C 1.37877 * 119.99937 * 59.99968 * 5 3 2 8 8 N 1.31517 * 120.00298 * 359.97438 * 7 5 3 9 9 Si 1.86810 * 119.99893 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46936 * 119.99979 * 9 7 5 12 12 H 1.48498 * 109.46896 * 240.00000 * 9 7 5 13 13 C 1.50701 * 109.46983 * 65.00346 * 3 2 1 14 14 O 1.21251 * 119.99773 * 95.00512 * 13 3 2 15 15 C 1.47160 * 119.99661 * 274.99564 * 13 3 2 16 16 C 1.39875 * 120.17509 * 354.11713 * 15 13 3 17 17 C 1.37873 * 119.82492 * 180.27799 * 16 15 13 18 18 C 1.50693 * 119.91356 * 179.72189 * 17 16 15 19 19 C 1.38427 * 120.16843 * 359.69542 * 17 16 15 20 20 C 1.50701 * 119.81866 * 180.02562 * 19 17 16 21 21 C 1.38382 * 120.35378 * 0.02562 * 19 17 16 22 22 C 1.37908 * 120.16673 * 0.02562 * 21 19 17 23 23 C 1.50703 * 120.08350 * 179.97438 * 22 21 19 24 24 H 1.08994 * 109.47032 * 60.00055 * 1 2 3 25 25 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46854 * 300.00041 * 1 2 3 27 27 H 1.09002 * 109.47063 * 240.00464 * 2 1 3 28 28 H 1.09003 * 109.47578 * 120.00132 * 2 1 3 29 29 H 0.96996 * 119.99979 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.09029 * 359.97438 * 16 15 13 31 31 H 1.08999 * 109.47230 * 269.97561 * 18 17 16 32 32 H 1.09006 * 109.47027 * 29.97734 * 18 17 16 33 33 H 1.08997 * 109.47246 * 149.97254 * 18 17 16 34 34 H 1.08996 * 109.47285 * 269.97570 * 20 19 17 35 35 H 1.08995 * 109.47647 * 29.98179 * 20 19 17 36 36 H 1.09010 * 109.46976 * 149.97936 * 20 19 17 37 37 H 1.07992 * 119.91425 * 179.97438 * 21 19 17 38 38 H 1.09008 * 109.47058 * 97.25491 * 23 22 21 39 39 H 1.09001 * 109.47431 * 217.25639 * 23 22 21 40 40 H 1.09003 * 109.46966 * 337.25762 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1473 1.8890 0.6521 7 6 4.1432 0.8785 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0050 0.8802 -1.3813 10 1 6.5988 1.5454 -0.1938 11 1 6.4962 -0.5188 -1.4629 12 1 6.3999 1.6159 -2.6094 13 6 1.6414 2.1162 1.2878 14 8 2.4158 2.1484 2.2201 15 6 0.3122 2.7353 1.4135 16 6 -0.5366 2.8094 0.3042 17 6 -1.7781 3.3960 0.4287 18 6 -2.6916 3.4826 -0.7666 19 6 -2.1877 3.9052 1.6490 20 6 -3.5465 4.5442 1.7764 21 6 -1.3560 3.8305 2.7525 22 6 -0.1109 3.2476 2.6438 23 6 0.7935 3.1678 3.8466 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 3.8292 -0.0617 -2.9496 30 1 -0.2184 2.4126 -0.6486 31 1 -2.5059 4.4154 -1.2991 32 1 -2.5006 2.6403 -1.4317 33 1 -3.7292 3.4546 -0.4338 34 1 -3.4681 5.6102 1.5633 35 1 -4.2335 4.0816 1.0678 36 1 -3.9209 4.4029 2.7904 37 1 -1.6826 4.2303 3.7011 38 1 0.6995 2.1843 4.3073 39 1 1.8262 3.3263 3.5360 40 1 0.5088 3.9350 4.5668 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234028047.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:57 Heat of formation + Delta-G solvation = -47.369307 kcal Electronic energy + Delta-G solvation = -19907.047723 eV Core-core repulsion = 17071.483397 eV Total energy + Delta-G solvation = -2835.564326 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38476 -39.44491 -36.48560 -34.94456 -34.07305 -32.80946 -30.31365 -29.57392 -28.43136 -26.24364 -25.36139 -23.37743 -23.35247 -21.15729 -19.84159 -18.44619 -17.53589 -16.75895 -16.52515 -16.03134 -15.90309 -15.41353 -14.95848 -14.81677 -14.50966 -14.21584 -13.86265 -13.75414 -13.65509 -13.49602 -13.46925 -13.19539 -12.86102 -12.75478 -12.72000 -12.57125 -12.26493 -12.19066 -12.10525 -11.83984 -11.68383 -11.54137 -10.96751 -10.52176 -9.87564 -9.60473 -9.31587 -8.15832 -6.28171 -0.16202 0.45538 1.36604 1.38617 1.51251 1.67171 2.40097 2.84349 3.11495 3.44171 3.83212 3.93650 3.99274 4.25244 4.28171 4.44742 4.51969 4.60583 4.66076 4.70688 4.77363 4.79078 4.85109 4.86065 4.90365 4.99574 5.02447 5.07937 5.19016 5.24635 5.26430 5.32765 5.42945 5.45924 5.58048 5.70010 5.72024 5.74108 5.97423 6.09724 6.24743 6.76502 6.96354 7.38910 8.88915 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.006075 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.211503 B = 4607.942444 C = 5182.474345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C 0.008 3.992 4 H 0.040 0.960 5 C -0.534 4.534 6 H 0.043 0.957 7 C 0.022 3.978 8 N -0.908 5.908 9 Si 0.953 3.047 10 H -0.279 1.279 11 H -0.275 1.275 12 H -0.272 1.272 13 C 0.397 3.603 14 O -0.491 6.491 15 C -0.191 4.191 16 C -0.067 4.067 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.055 4.055 20 C -0.116 4.116 21 C -0.138 4.138 22 C -0.050 4.050 23 C -0.125 4.125 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.018 0.982 29 H 0.265 0.735 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 6.796 5.019 18.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 C -0.011 4.011 4 H 0.058 0.942 5 C -0.572 4.572 6 H 0.062 0.938 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.200 1.200 12 H -0.198 1.198 13 C 0.279 3.721 14 O -0.370 6.370 15 C -0.192 4.192 16 C -0.085 4.085 17 C -0.117 4.117 18 C -0.169 4.169 19 C -0.055 4.055 20 C -0.172 4.172 21 C -0.156 4.156 22 C -0.050 4.050 23 C -0.181 4.181 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.169 0.831 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.645 6.720 5.322 17.840 hybrid contribution 1.645 -0.365 -0.289 1.709 sum -14.000 6.355 5.033 16.178 Atomic orbital electron populations 1.21996 0.95518 1.01275 1.01125 1.21295 0.94772 0.96720 1.01097 1.19118 0.96047 0.94392 0.91573 0.94210 1.21330 0.92029 1.38421 1.05402 0.93837 1.25587 1.02416 0.94591 0.95126 1.69947 1.36263 1.38721 1.09740 0.85583 0.80615 0.78061 0.77886 1.20385 1.20007 1.19751 1.23315 0.85109 0.74376 0.89284 1.90246 1.54245 1.51113 1.41442 1.20546 0.96680 1.06150 0.95854 1.21578 0.93342 0.95819 0.97734 1.20033 0.95009 0.99760 0.96857 1.20898 0.98791 1.02988 0.94215 1.20381 0.97533 0.95696 0.91900 1.20987 0.91114 1.00941 1.04128 1.21136 0.92746 1.01675 1.00041 1.20400 0.95694 0.94835 0.94107 1.21094 1.00016 1.02184 0.94795 0.92252 0.92516 0.93387 0.90172 0.96271 0.92545 0.85596 0.90315 0.91653 0.88855 0.89622 0.89516 0.90092 0.83116 0.91732 0.91010 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.48 8.32 71.98 0.60 -4.88 16 2 C -0.10 -4.92 5.23 30.60 0.16 -4.76 16 3 C 0.01 0.39 1.76 -12.28 -0.02 0.37 16 4 H 0.04 2.14 6.53 -2.38 -0.02 2.12 16 5 C -0.53 -31.52 8.33 25.60 0.21 -31.31 16 6 H 0.04 2.71 7.03 -2.91 -0.02 2.69 16 7 C 0.02 1.26 5.29 84.65 0.45 1.71 16 8 N -0.91 -51.64 11.29 21.45 0.24 -51.39 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.35 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.40 19.26 5.84 28.03 0.16 19.42 16 14 O -0.49 -25.84 12.69 -2.94 -0.04 -25.88 16 15 C -0.19 -7.56 4.70 -20.15 -0.09 -7.65 16 16 C -0.07 -2.29 6.88 22.58 0.16 -2.14 16 17 C -0.12 -3.09 5.87 -19.91 -0.12 -3.21 16 18 C -0.11 -2.16 9.59 71.23 0.68 -1.48 16 19 C -0.05 -1.28 5.89 -19.78 -0.12 -1.39 16 20 C -0.12 -1.62 9.59 71.24 0.68 -0.93 16 21 C -0.14 -3.59 9.31 22.23 0.21 -3.38 16 22 C -0.05 -1.70 5.92 -19.56 -0.12 -1.82 16 23 C -0.12 -4.11 8.94 71.24 0.64 -3.47 16 24 H 0.06 2.15 6.78 -2.39 -0.02 2.14 16 25 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.80 5.48 -2.39 -0.01 1.79 16 27 H 0.08 4.30 5.95 -2.39 -0.01 4.28 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.13 4.58 4.82 -2.91 -0.01 4.57 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.30 8.08 -2.38 -0.02 1.28 16 33 H 0.09 1.29 5.93 -2.39 -0.01 1.28 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 0.98 5.92 -2.39 -0.01 0.97 16 36 H 0.08 0.92 8.08 -2.38 -0.02 0.90 16 37 H 0.15 2.92 8.05 -2.91 -0.02 2.90 16 38 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.07 2.85 5.54 -2.39 -0.01 2.84 16 40 H 0.08 2.14 8.03 -2.39 -0.02 2.12 16 Total: -1.00 -67.31 311.54 6.75 -60.56 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.04 Total: 14.27 kcal Atomic # 6 Polarization: -48.40 SS G_CDS: 3.48 Total: -44.91 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.24 Total: -51.39 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -67.31 6.75 -60.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234028047.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.187 kcal (2) G-P(sol) polarization free energy of solvation -67.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds