Wall clock time and date at job start Mon Mar 30 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99512 * 2 1 4 4 H 1.48499 * 109.47303 * 269.99714 * 3 2 1 5 5 H 1.48493 * 109.47570 * 30.00317 * 3 2 1 6 6 H 1.48504 * 109.46861 * 150.00296 * 3 2 1 7 7 C 1.37875 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99872 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99577 * 89.99972 * 10 9 7 12 12 C 1.52999 * 109.46908 * 269.99551 * 11 10 9 13 13 H 1.09002 * 110.33711 * 294.20331 * 12 11 10 14 14 C 1.54916 * 110.46485 * 171.88665 * 12 11 10 15 15 C 1.55398 * 101.74107 * 204.14421 * 14 12 11 16 16 C 1.54322 * 102.90031 * 35.47831 * 15 14 12 17 17 N 1.47439 * 107.36952 * 337.89642 * 16 15 14 18 18 C 1.39670 * 119.99865 * 269.99771 * 10 9 7 19 19 C 1.38917 * 120.07146 * 179.72389 * 18 10 9 20 20 C 1.38108 * 119.92174 * 179.77027 * 19 18 10 21 21 C 1.38282 * 120.07631 * 0.50999 * 20 19 18 22 22 C 1.38295 * 120.15004 * 359.74359 * 21 20 19 23 23 C 1.38100 * 120.07146 * 0.02562 * 22 21 20 24 24 H 0.97003 * 120.00837 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46960 * 59.99896 * 9 7 2 26 26 H 1.08994 * 109.46766 * 299.99506 * 9 7 2 27 27 H 1.09005 * 109.46845 * 150.00393 * 11 10 9 28 28 H 1.09000 * 109.47519 * 30.00101 * 11 10 9 29 29 H 1.08995 * 110.98807 * 322.14301 * 14 12 11 30 30 H 1.08997 * 110.99078 * 85.96334 * 14 12 11 31 31 H 1.09005 * 110.67856 * 277.17709 * 15 14 12 32 32 H 1.08997 * 110.84583 * 153.86033 * 15 14 12 33 33 H 1.09002 * 109.89036 * 218.40745 * 16 15 14 34 34 H 1.09003 * 109.88743 * 97.38054 * 16 15 14 35 35 H 1.00906 * 111.00400 * 121.19733 * 17 16 15 36 36 H 1.07995 * 120.03579 * 0.02562 * 19 18 10 37 37 H 1.07997 * 119.95747 * 180.25565 * 20 19 18 38 38 H 1.08000 * 119.92850 * 179.72463 * 21 20 19 39 39 H 1.08000 * 119.96290 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.6791 -4.1704 1.2656 12 6 3.9412 -3.4272 1.7078 13 1 4.7562 -3.6153 1.0088 14 6 4.3489 -3.8564 3.1395 15 6 5.1668 -2.6247 3.6179 16 6 4.4237 -1.4418 2.9622 17 7 3.6752 -1.9765 1.8100 18 6 2.6569 -4.1424 -1.2128 19 6 3.5641 -5.1944 -1.2155 20 6 4.0071 -5.7190 -2.4138 21 6 3.5568 -5.1912 -3.6100 22 6 2.6577 -4.1404 -3.6109 23 6 2.2070 -3.6143 -2.4162 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.9076 -5.2282 1.1343 28 1 1.9058 -4.0573 2.0254 29 1 3.4705 -4.0067 3.7670 30 1 4.9688 -4.7526 3.1168 31 1 6.1942 -2.6816 3.2581 32 1 5.1419 -2.5409 4.7044 33 1 5.1416 -0.6947 2.6236 34 1 3.7335 -0.9950 3.6777 35 1 2.6870 -1.7960 1.9054 36 1 3.9193 -5.6043 -0.2816 37 1 4.7092 -6.5396 -2.4166 38 1 3.9083 -5.6003 -4.5457 39 1 2.3084 -3.7303 -4.5469 40 1 1.5052 -2.7934 -2.4176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236189246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:00 Heat of formation + Delta-G solvation = 42.903154 kcal Electronic energy + Delta-G solvation = -20172.203747 eV Core-core repulsion = 17372.846680 eV Total energy + Delta-G solvation = -2799.357067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.15997 -37.90105 -35.27174 -32.68887 -30.63143 -29.92278 -29.51274 -28.58678 -26.69230 -24.19852 -22.74506 -21.40073 -20.61044 -20.40499 -19.52284 -16.81765 -16.54783 -15.70620 -15.05469 -14.82292 -14.78449 -14.12231 -13.86690 -13.25320 -13.16249 -12.93569 -12.76220 -12.54685 -11.98892 -11.83834 -11.54735 -11.43028 -11.12157 -10.97737 -10.74376 -10.72454 -10.59841 -10.56563 -10.40146 -10.11859 -9.76126 -9.43447 -8.83811 -8.38794 -8.22426 -7.44047 -6.41845 -5.92084 -3.99052 2.14825 2.37148 3.35479 3.42672 3.50585 4.07526 4.51820 4.64078 4.84841 5.00044 5.10498 5.26422 5.42907 5.53212 5.60159 5.66341 5.71169 5.77853 5.84372 5.89829 6.00177 6.03675 6.12548 6.17043 6.30496 6.37513 6.45250 6.47370 6.65131 6.70092 6.99412 7.12669 7.23132 7.30155 7.42208 7.64568 7.69765 8.01971 8.24277 8.32056 8.45339 8.52171 9.24864 9.65563 11.07717 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.009632 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.853466 B = 2906.402016 C = 4388.975326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.245 3.755 10 N -0.605 5.605 11 C 0.123 3.877 12 C 0.061 3.939 13 H 0.077 0.923 14 C -0.149 4.149 15 C -0.138 4.138 16 C 0.040 3.960 17 N -0.651 5.651 18 C 0.244 3.756 19 C -0.220 4.220 20 C -0.079 4.079 21 C -0.206 4.206 22 C -0.078 4.078 23 C -0.186 4.186 24 H 0.259 0.741 25 H 0.034 0.966 26 H 0.024 0.976 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.368 0.632 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.688 -8.620 2.912 11.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.557 4.557 8 H 0.119 0.881 9 C 0.126 3.874 10 N -0.309 5.309 11 C -0.002 4.002 12 C -0.050 4.050 13 H 0.095 0.905 14 C -0.189 4.189 15 C -0.177 4.177 16 C -0.089 4.089 17 N -0.288 5.288 18 C 0.137 3.863 19 C -0.244 4.244 20 C -0.098 4.098 21 C -0.226 4.226 22 C -0.097 4.097 23 C -0.208 4.208 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.194 0.806 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.853 -8.170 2.633 10.984 hybrid contribution -0.012 0.767 0.826 1.127 sum 6.841 -7.403 3.459 10.657 Atomic orbital electron populations 1.69964 1.06101 1.26757 1.51526 1.24982 0.94599 0.99189 0.95670 0.86577 0.80165 0.83224 0.78036 1.21035 1.21940 1.19319 1.22194 0.95954 0.89427 1.48129 0.88104 1.19360 0.87136 0.83233 0.97697 1.47041 1.47037 1.36000 1.00847 1.21528 0.95170 0.96623 0.86909 1.22991 0.97916 0.89750 0.94355 0.90508 1.23240 0.99736 0.97969 0.97984 1.22802 0.99538 0.95645 0.99670 1.22677 0.97303 0.96813 0.92141 1.62650 1.16829 1.10295 1.39042 1.17872 0.91054 0.90633 0.86718 1.20555 1.04466 1.01489 0.97841 1.20657 0.98367 0.98436 0.92358 1.20641 1.03731 1.01207 0.97063 1.20816 0.96256 0.95505 0.97090 1.20903 1.05476 1.03614 0.90805 0.93096 0.94854 0.95841 0.91456 0.91590 0.91734 0.91543 0.91667 0.91950 0.91930 0.94018 0.80604 0.87126 0.87578 0.87794 0.87235 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.31 13.29 55.43 0.74 -24.57 16 2 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.14 6.50 -34.44 -0.22 -13.37 16 8 H 0.10 2.66 5.93 -52.49 -0.31 2.35 16 9 C 0.25 5.80 4.46 -5.19 -0.02 5.78 16 10 N -0.60 -12.18 2.54 -173.11 -0.44 -12.62 16 11 C 0.12 2.06 4.71 -4.04 -0.02 2.05 16 12 C 0.06 1.02 3.69 -66.18 -0.24 0.77 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C -0.15 -2.00 6.50 -24.45 -0.16 -2.15 16 15 C -0.14 -1.85 6.97 -24.77 -0.17 -2.02 16 16 C 0.04 0.67 7.57 -2.84 -0.02 0.65 16 17 N -0.65 -12.52 4.40 -103.84 -0.46 -12.98 16 18 C 0.24 4.85 6.55 -83.79 -0.55 4.30 16 19 C -0.22 -3.84 9.21 -39.38 -0.36 -4.21 16 20 C -0.08 -1.27 10.04 -39.61 -0.40 -1.67 16 21 C -0.21 -3.34 10.04 -39.54 -0.40 -3.74 16 22 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 23 C -0.19 -3.77 9.21 -39.38 -0.36 -4.13 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.03 0.86 6.20 -51.93 -0.32 0.54 16 26 H 0.02 0.59 7.89 -51.93 -0.41 0.18 16 27 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 28 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16 29 H 0.06 0.83 8.00 -51.93 -0.42 0.42 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.37 7.83 5.50 -39.29 -0.22 7.61 16 36 H 0.11 1.74 6.15 -52.49 -0.32 1.41 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.13 2.91 6.14 -52.48 -0.32 2.59 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -27.17 313.22 -9.88 -37.04 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.99 Total: 10.16 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -3.43 Total: -18.11 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.16 Total: -50.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.17 -9.88 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236189246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.947 kcal (2) G-P(sol) polarization free energy of solvation -27.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds