Wall clock time and date at job start Mon Mar 30 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99512 * 2 1 4 4 H 1.48499 * 109.47303 * 269.99714 * 3 2 1 5 5 H 1.48493 * 109.47570 * 30.00317 * 3 2 1 6 6 H 1.48504 * 109.46861 * 150.00296 * 3 2 1 7 7 C 1.37875 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99872 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.46501 * 119.99577 * 89.99972 * 10 9 7 12 12 C 1.52999 * 109.46908 * 269.99551 * 11 10 9 13 13 H 1.09002 * 110.33711 * 294.20331 * 12 11 10 14 14 C 1.54916 * 110.46485 * 171.88665 * 12 11 10 15 15 C 1.55398 * 101.74107 * 204.14421 * 14 12 11 16 16 C 1.54322 * 102.90031 * 35.47831 * 15 14 12 17 17 N 1.47439 * 107.36952 * 337.89642 * 16 15 14 18 18 C 1.39670 * 119.99865 * 269.99771 * 10 9 7 19 19 C 1.38917 * 120.07146 * 179.72389 * 18 10 9 20 20 C 1.38108 * 119.92174 * 179.77027 * 19 18 10 21 21 C 1.38282 * 120.07631 * 0.50999 * 20 19 18 22 22 C 1.38295 * 120.15004 * 359.74359 * 21 20 19 23 23 C 1.38100 * 120.07146 * 0.02562 * 22 21 20 24 24 H 0.97003 * 120.00837 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46960 * 59.99896 * 9 7 2 26 26 H 1.08994 * 109.46766 * 299.99506 * 9 7 2 27 27 H 1.09005 * 109.46845 * 150.00393 * 11 10 9 28 28 H 1.09000 * 109.47519 * 30.00101 * 11 10 9 29 29 H 1.08995 * 110.98807 * 322.14301 * 14 12 11 30 30 H 1.08997 * 110.99078 * 85.96334 * 14 12 11 31 31 H 1.09005 * 110.67856 * 277.17709 * 15 14 12 32 32 H 1.08997 * 110.84583 * 153.86033 * 15 14 12 33 33 H 1.09002 * 109.89036 * 218.40745 * 16 15 14 34 34 H 1.09003 * 109.88743 * 97.38054 * 16 15 14 35 35 H 1.00906 * 111.00400 * 121.19733 * 17 16 15 36 36 H 1.07995 * 120.03579 * 0.02562 * 19 18 10 37 37 H 1.07997 * 119.95747 * 180.25565 * 20 19 18 38 38 H 1.08000 * 119.92850 * 179.72463 * 21 20 19 39 39 H 1.08000 * 119.96290 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.03870 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.6791 -4.1704 1.2656 12 6 3.9412 -3.4272 1.7078 13 1 4.7562 -3.6153 1.0088 14 6 4.3489 -3.8564 3.1395 15 6 5.1668 -2.6247 3.6179 16 6 4.4237 -1.4418 2.9622 17 7 3.6752 -1.9765 1.8100 18 6 2.6569 -4.1424 -1.2128 19 6 3.5641 -5.1944 -1.2155 20 6 4.0071 -5.7190 -2.4138 21 6 3.5568 -5.1912 -3.6100 22 6 2.6577 -4.1404 -3.6109 23 6 2.2070 -3.6143 -2.4162 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6242 -2.5575 0.8880 27 1 2.9076 -5.2282 1.1343 28 1 1.9058 -4.0573 2.0254 29 1 3.4705 -4.0067 3.7670 30 1 4.9688 -4.7526 3.1168 31 1 6.1942 -2.6816 3.2581 32 1 5.1419 -2.5409 4.7044 33 1 5.1416 -0.6947 2.6236 34 1 3.7335 -0.9950 3.6777 35 1 2.6870 -1.7960 1.9054 36 1 3.9193 -5.6043 -0.2816 37 1 4.7092 -6.5396 -2.4166 38 1 3.9083 -5.6003 -4.5457 39 1 2.3084 -3.7303 -4.5469 40 1 1.5052 -2.7934 -2.4176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236189246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:00 Heat of formation + Delta-G solvation = 28.970366 kcal Electronic energy + Delta-G solvation = -20172.807918 eV Core-core repulsion = 17372.846680 eV Total energy + Delta-G solvation = -2799.961238 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57517 -39.20978 -36.76648 -34.64554 -32.05743 -31.27457 -30.86056 -30.12124 -28.30328 -25.73769 -24.44139 -22.82031 -21.93371 -21.64126 -20.94386 -18.54664 -18.19206 -17.07288 -16.65570 -16.31842 -16.14514 -15.82484 -15.18644 -14.71459 -14.56971 -14.47070 -14.14814 -14.00893 -13.70793 -13.14887 -13.12312 -13.02678 -12.68716 -12.50266 -12.32915 -12.23608 -12.02167 -11.89526 -11.80814 -11.52402 -11.32882 -11.25240 -10.48966 -10.40191 -9.61382 -8.87950 -8.21810 -7.71771 -6.08882 0.75573 0.98187 1.40328 1.43509 1.55585 2.45148 2.63775 3.20239 3.23771 3.61457 3.86285 3.95265 4.10743 4.20574 4.32537 4.34597 4.45474 4.50703 4.63386 4.69878 4.74508 4.82995 4.89373 4.95783 5.02150 5.07000 5.12507 5.17914 5.22614 5.34143 5.39422 5.46188 5.71205 5.81835 5.93771 5.94658 6.27263 6.28782 6.38241 6.65989 6.81960 7.00697 7.20138 7.58077 9.00895 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013344 B = 0.009632 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.853466 B = 2906.402016 C = 4388.975326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.093 0.907 9 C 0.265 3.735 10 N -0.613 5.613 11 C 0.123 3.877 12 C 0.064 3.936 13 H 0.065 0.935 14 C -0.138 4.138 15 C -0.128 4.128 16 C 0.035 3.965 17 N -0.680 5.680 18 C 0.218 3.782 19 C -0.218 4.218 20 C -0.074 4.074 21 C -0.200 4.200 22 C -0.083 4.083 23 C -0.220 4.220 24 H 0.258 0.742 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.094 0.906 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.352 0.648 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.169 -10.760 3.270 14.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.111 0.889 9 C 0.143 3.857 10 N -0.319 5.319 11 C -0.001 4.001 12 C -0.047 4.047 13 H 0.083 0.917 14 C -0.177 4.177 15 C -0.167 4.167 16 C -0.095 4.095 17 N -0.316 5.316 18 C 0.114 3.886 19 C -0.241 4.241 20 C -0.093 4.093 21 C -0.220 4.220 22 C -0.102 4.102 23 C -0.243 4.243 24 H 0.066 0.934 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.379 -10.338 2.987 14.275 hybrid contribution -0.727 1.340 0.628 1.649 sum 8.652 -8.998 3.615 12.996 Atomic orbital electron populations 1.70065 1.07256 1.27073 1.53574 1.25590 0.95148 1.01834 0.96184 0.85734 0.79106 0.80338 0.77512 1.21475 1.21788 1.19090 1.22283 0.95468 0.90115 1.45919 0.88895 1.18837 0.87301 0.84259 0.95272 1.46860 1.47131 1.35532 1.02396 1.21695 0.95209 0.97845 0.85348 1.22937 0.97173 0.88356 0.96265 0.91674 1.23172 1.00354 0.98826 0.95385 1.22754 0.99308 0.93864 1.00726 1.22719 0.97123 0.98000 0.91612 1.62448 1.15733 1.12536 1.40840 1.18146 0.92361 0.91946 0.86179 1.20820 1.03315 1.00344 0.99606 1.21136 0.97983 0.98695 0.91458 1.21054 1.02234 0.99913 0.98821 1.21055 0.96470 0.96011 0.96665 1.20829 1.06613 1.04104 0.92714 0.93356 0.97809 0.97613 0.88842 0.91800 0.91108 0.88929 0.90961 0.89750 0.93071 0.94135 0.82465 0.85089 0.83688 0.84513 0.85747 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.73 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.95 45.27 29.54 68.60 2.03 47.29 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.50 -26.33 6.50 25.60 0.17 -26.16 16 8 H 0.09 5.05 5.93 -2.91 -0.02 5.03 16 9 C 0.26 13.21 4.46 85.63 0.38 13.59 16 10 N -0.61 -25.21 2.54 -701.61 -1.78 -26.99 16 11 C 0.12 4.02 4.71 86.38 0.41 4.43 16 12 C 0.06 2.02 3.69 45.39 0.17 2.19 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C -0.14 -3.25 6.50 32.07 0.21 -3.04 16 15 C -0.13 -3.08 6.97 31.87 0.22 -2.86 16 16 C 0.03 1.13 7.57 86.65 0.66 1.79 16 17 N -0.68 -26.21 4.40 -482.44 -2.12 -28.34 16 18 C 0.22 8.71 6.55 38.22 0.25 8.96 16 19 C -0.22 -7.06 9.21 22.40 0.21 -6.86 16 20 C -0.07 -2.08 10.04 22.25 0.22 -1.86 16 21 C -0.20 -5.84 10.04 22.29 0.22 -5.61 16 22 C -0.08 -2.88 10.04 22.25 0.22 -2.66 16 23 C -0.22 -9.23 9.21 22.40 0.21 -9.02 16 24 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 25 H 0.00 0.22 6.20 -2.39 -0.01 0.21 16 26 H 0.01 0.31 7.89 -2.39 -0.02 0.29 16 27 H 0.09 2.53 6.21 -2.38 -0.01 2.52 16 28 H 0.06 2.09 7.82 -2.39 -0.02 2.07 16 29 H 0.07 1.61 8.00 -2.39 -0.02 1.59 16 30 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.35 15.37 5.50 -89.69 -0.49 14.88 16 36 H 0.13 3.63 6.15 -2.91 -0.02 3.61 16 37 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 40 H 0.09 4.58 6.14 -2.91 -0.02 4.56 16 Total: -1.00 -61.14 313.22 2.94 -58.19 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.53 Total: 30.41 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 4.01 Total: -26.12 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -3.62 Total: -109.78 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -61.14 2.94 -58.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236189246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.165 kcal (2) G-P(sol) polarization free energy of solvation -61.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds