Wall clock time and date at job start Mon Mar 30 2020 06:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.52997 * 109.47247 * 90.00234 * 11 10 9 13 13 H 1.09001 * 109.90651 * 63.89470 * 12 11 10 14 14 C 1.53988 * 109.92026 * 185.00482 * 12 11 10 15 15 C 1.54594 * 105.14291 * 120.57651 * 14 12 11 16 16 C 1.54934 * 102.92032 * 21.95671 * 15 14 12 17 17 N 1.47909 * 109.91571 * 302.59445 * 12 11 10 18 18 C 1.39681 * 120.00226 * 90.00101 * 10 9 7 19 19 C 1.38909 * 120.07764 * 179.72042 * 18 10 9 20 20 C 1.38096 * 119.92436 * 179.76769 * 19 18 10 21 21 C 1.38286 * 120.07745 * 0.50729 * 20 19 18 22 22 C 1.38286 * 120.14857 * 359.74688 * 21 20 19 23 23 C 1.38113 * 120.07479 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 28 28 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 29 29 H 1.09002 * 110.31019 * 239.49419 * 14 12 11 30 30 H 1.09001 * 110.30905 * 1.56042 * 14 12 11 31 31 H 1.08995 * 110.72243 * 140.31615 * 15 14 12 32 32 H 1.09006 * 110.72220 * 263.60146 * 15 14 12 33 33 H 1.08999 * 110.66706 * 81.02261 * 16 15 14 34 34 H 1.09000 * 110.66625 * 204.15228 * 16 15 14 35 35 H 1.00906 * 110.99688 * 335.82364 * 17 12 11 36 36 H 1.08003 * 120.03181 * 0.02562 * 19 18 10 37 37 H 1.07997 * 119.96260 * 180.25795 * 20 19 18 38 38 H 1.07996 * 119.92884 * 179.72649 * 21 20 19 39 39 H 1.07999 * 119.96452 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.03603 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9424 -3.4252 -1.7105 13 1 4.7421 -3.5917 -0.9887 14 6 4.3816 -3.9158 -3.1025 15 6 4.3588 -2.6572 -3.9999 16 6 4.4729 -1.4997 -2.9764 17 7 3.6591 -1.9784 -1.8297 18 6 2.6559 -4.1441 1.2083 19 6 3.5541 -5.2037 1.2104 20 6 4.0036 -5.7235 2.4082 21 6 3.5524 -5.1973 3.6048 22 6 2.6542 -4.1459 3.6064 23 6 2.2050 -3.6174 2.4121 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.9082 -5.2268 -1.1400 28 1 1.9071 -4.0547 -2.0302 29 1 5.3888 -4.3300 -3.0573 30 1 3.6825 -4.6629 -3.4783 31 1 5.2090 -2.6543 -4.6819 32 1 3.4205 -2.5935 -4.5512 33 1 5.5105 -1.3521 -2.6767 34 1 4.0555 -0.5804 -3.3871 35 1 2.6765 -1.8144 -1.9903 36 1 3.9038 -5.6177 0.2761 37 1 4.7051 -6.5446 2.4105 38 1 3.9021 -5.6086 4.5402 39 1 2.3041 -3.7369 4.5427 40 1 1.5032 -2.7966 2.4141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236189939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:03 Heat of formation + Delta-G solvation = 42.911431 kcal Electronic energy + Delta-G solvation = -20182.137527 eV Core-core repulsion = 17382.780819 eV Total energy + Delta-G solvation = -2799.356708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.19359 -37.96032 -35.25744 -32.65988 -30.62003 -29.87076 -29.49439 -28.57552 -26.65919 -24.16319 -22.72973 -21.41604 -21.08570 -20.01574 -19.55596 -16.85404 -16.49635 -15.70944 -14.99036 -14.82148 -14.46631 -14.16866 -14.04017 -13.34373 -13.27553 -12.95963 -12.76455 -12.61737 -12.00674 -11.80706 -11.43523 -11.36633 -11.10524 -10.98564 -10.77150 -10.71049 -10.60110 -10.55372 -10.31359 -10.11942 -9.74850 -9.44011 -8.83374 -8.37851 -8.22376 -7.57922 -6.41088 -5.90344 -3.96387 2.14893 2.37357 3.34060 3.43490 3.53208 4.09069 4.53271 4.64232 4.81378 5.05787 5.09977 5.29372 5.43383 5.53227 5.60479 5.63183 5.69434 5.80171 5.83597 5.90306 6.01234 6.05605 6.13888 6.16638 6.27640 6.35526 6.45292 6.47467 6.61891 6.69586 6.99856 7.12987 7.23530 7.30807 7.42972 7.53467 7.66324 8.04178 8.24635 8.32650 8.39773 8.52729 9.27160 9.67994 11.10121 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.009613 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.894816 B = 2911.912954 C = 4400.826541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.512 4.512 8 H 0.100 0.900 9 C 0.246 3.754 10 N -0.604 5.604 11 C 0.124 3.876 12 C 0.055 3.945 13 H 0.076 0.924 14 C -0.146 4.146 15 C -0.157 4.157 16 C 0.033 3.967 17 N -0.634 5.634 18 C 0.244 3.756 19 C -0.221 4.221 20 C -0.079 4.079 21 C -0.206 4.206 22 C -0.078 4.078 23 C -0.186 4.186 24 H 0.258 0.742 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.362 0.638 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.625 -8.550 -3.059 11.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.193 1.193 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.551 4.551 8 H 0.118 0.882 9 C 0.126 3.874 10 N -0.309 5.309 11 C -0.001 4.001 12 C -0.057 4.057 13 H 0.094 0.906 14 C -0.186 4.186 15 C -0.196 4.196 16 C -0.097 4.097 17 N -0.268 5.268 18 C 0.137 3.863 19 C -0.244 4.244 20 C -0.098 4.098 21 C -0.227 4.227 22 C -0.097 4.097 23 C -0.208 4.208 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.186 0.814 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.768 -8.075 -2.712 10.880 hybrid contribution 0.005 0.670 -0.904 1.125 sum 6.773 -7.405 -3.616 10.667 Atomic orbital electron populations 1.69980 1.06075 1.26554 1.51943 1.24975 0.94590 0.99144 0.95855 0.86523 0.80763 0.83686 0.77017 1.19258 1.21654 1.21620 1.22204 0.95893 0.89347 1.47655 0.88186 1.19361 0.87119 0.83279 0.97643 1.47050 1.47008 1.35988 1.00840 1.21590 0.95159 0.96511 0.86872 1.22858 0.97940 0.90042 0.94901 0.90571 1.22857 1.01201 0.97914 0.96655 1.23132 1.01306 0.96505 0.98655 1.23180 0.99538 0.96686 0.90259 1.63569 1.13895 1.10697 1.38628 1.17874 0.91079 0.90578 0.86742 1.20551 1.04673 1.01349 0.97843 1.20654 0.98311 0.98476 0.92360 1.20638 1.03741 1.01235 0.97056 1.20817 0.96261 0.95483 0.97095 1.20908 1.05450 1.03654 0.90803 0.93219 0.94909 0.95874 0.91559 0.91616 0.91930 0.91918 0.91910 0.91949 0.91413 0.91518 0.81373 0.87140 0.87586 0.87797 0.87235 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.51 -12.99 6.57 -34.44 -0.23 -13.22 16 8 H 0.10 2.64 5.98 -52.49 -0.31 2.33 16 9 C 0.25 5.81 4.47 -5.19 -0.02 5.79 16 10 N -0.60 -12.18 2.55 -173.12 -0.44 -12.63 16 11 C 0.12 2.08 4.41 -4.04 -0.02 2.06 16 12 C 0.05 0.90 3.69 -66.64 -0.25 0.65 16 13 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 14 C -0.15 -1.94 6.57 -25.38 -0.17 -2.11 16 15 C -0.16 -2.08 7.06 -24.87 -0.18 -2.25 16 16 C 0.03 0.53 7.55 -1.90 -0.01 0.52 16 17 N -0.63 -11.98 4.30 -103.13 -0.44 -12.43 16 18 C 0.24 4.86 6.55 -83.78 -0.55 4.31 16 19 C -0.22 -3.86 9.21 -39.38 -0.36 -4.22 16 20 C -0.08 -1.27 10.04 -39.62 -0.40 -1.67 16 21 C -0.21 -3.35 10.04 -39.55 -0.40 -3.75 16 22 C -0.08 -1.37 10.04 -39.61 -0.40 -1.77 16 23 C -0.19 -3.78 9.21 -39.38 -0.36 -4.14 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.03 0.85 6.20 -51.93 -0.32 0.53 16 26 H 0.02 0.58 7.89 -51.93 -0.41 0.17 16 27 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 28 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.76 7.69 -51.93 -0.40 0.36 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.36 7.54 5.93 -39.29 -0.23 7.31 16 36 H 0.11 1.74 6.14 -52.48 -0.32 1.42 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.10 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 40 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -27.23 313.24 -9.88 -37.11 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -5.99 Total: 9.93 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -3.43 Total: -18.43 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.15 Total: -49.73 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.23 -9.88 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236189939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.022 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds