Wall clock time and date at job start Mon Mar 30 2020 06:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47106 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00229 * 269.99670 * 10 9 7 12 12 C 1.52997 * 109.47247 * 90.00234 * 11 10 9 13 13 H 1.09001 * 109.90651 * 63.89470 * 12 11 10 14 14 C 1.53988 * 109.92026 * 185.00482 * 12 11 10 15 15 C 1.54594 * 105.14291 * 120.57651 * 14 12 11 16 16 C 1.54934 * 102.92032 * 21.95671 * 15 14 12 17 17 N 1.47909 * 109.91571 * 302.59445 * 12 11 10 18 18 C 1.39681 * 120.00226 * 90.00101 * 10 9 7 19 19 C 1.38909 * 120.07764 * 179.72042 * 18 10 9 20 20 C 1.38096 * 119.92436 * 179.76769 * 19 18 10 21 21 C 1.38286 * 120.07745 * 0.50729 * 20 19 18 22 22 C 1.38286 * 120.14857 * 359.74688 * 21 20 19 23 23 C 1.38113 * 120.07479 * 359.97438 * 22 21 20 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09000 * 109.47510 * 210.00347 * 11 10 9 28 28 H 1.09000 * 109.46747 * 330.00037 * 11 10 9 29 29 H 1.09002 * 110.31019 * 239.49419 * 14 12 11 30 30 H 1.09001 * 110.30905 * 1.56042 * 14 12 11 31 31 H 1.08995 * 110.72243 * 140.31615 * 15 14 12 32 32 H 1.09006 * 110.72220 * 263.60146 * 15 14 12 33 33 H 1.08999 * 110.66706 * 81.02261 * 16 15 14 34 34 H 1.09000 * 110.66625 * 204.15228 * 16 15 14 35 35 H 1.00906 * 110.99688 * 335.82364 * 17 12 11 36 36 H 1.08003 * 120.03181 * 0.02562 * 19 18 10 37 37 H 1.07997 * 119.96260 * 180.25795 * 20 19 18 38 38 H 1.07996 * 119.92884 * 179.72649 * 21 20 19 39 39 H 1.07999 * 119.96452 * 180.02562 * 22 21 20 40 40 H 1.08001 * 120.03603 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2030 -3.6126 -0.0015 11 6 2.6800 -4.1689 -1.2700 12 6 3.9424 -3.4252 -1.7105 13 1 4.7421 -3.5917 -0.9887 14 6 4.3816 -3.9158 -3.1025 15 6 4.3588 -2.6572 -3.9999 16 6 4.4729 -1.4997 -2.9764 17 7 3.6591 -1.9784 -1.8297 18 6 2.6559 -4.1441 1.2083 19 6 3.5541 -5.2037 1.2104 20 6 4.0036 -5.7235 2.4082 21 6 3.5524 -5.1973 3.6048 22 6 2.6542 -4.1459 3.6064 23 6 2.2050 -3.6174 2.4121 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.9082 -5.2268 -1.1400 28 1 1.9071 -4.0547 -2.0302 29 1 5.3888 -4.3300 -3.0573 30 1 3.6825 -4.6629 -3.4783 31 1 5.2090 -2.6543 -4.6819 32 1 3.4205 -2.5935 -4.5512 33 1 5.5105 -1.3521 -2.6767 34 1 4.0555 -0.5804 -3.3871 35 1 2.6765 -1.8144 -1.9903 36 1 3.9038 -5.6177 0.2761 37 1 4.7051 -6.5446 2.4105 38 1 3.9021 -5.6086 4.5402 39 1 2.3041 -3.7369 4.5427 40 1 1.5032 -2.7966 2.4141 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236189939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:02 Heat of formation + Delta-G solvation = 28.954730 kcal Electronic energy + Delta-G solvation = -20182.742735 eV Core-core repulsion = 17382.780819 eV Total energy + Delta-G solvation = -2799.961916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59971 -39.26112 -36.75389 -34.61851 -32.04876 -31.21729 -30.82523 -30.09847 -28.27252 -25.69336 -24.42508 -22.82327 -22.37784 -21.35922 -20.88436 -18.50283 -18.24043 -17.10015 -16.58971 -16.28857 -15.89100 -15.70600 -15.39359 -14.78816 -14.59475 -14.44977 -14.26616 -14.03662 -13.76434 -13.15600 -13.13897 -12.82728 -12.63354 -12.54430 -12.31428 -12.22679 -12.01136 -11.91503 -11.75700 -11.51097 -11.28745 -11.22522 -10.47557 -10.40319 -9.61620 -8.99179 -8.20333 -7.71167 -6.06509 0.75361 0.98162 1.39194 1.44113 1.57854 2.46472 2.64986 3.22588 3.23739 3.59704 3.93503 3.94721 4.13826 4.22099 4.32325 4.34344 4.42433 4.50466 4.65958 4.70039 4.76150 4.82551 4.90442 4.98392 5.01464 5.07654 5.13307 5.18108 5.24584 5.35184 5.39482 5.43367 5.71311 5.81683 5.94134 5.96335 6.24090 6.29853 6.31246 6.66753 6.78181 7.00959 7.21577 7.60279 9.03252 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.009613 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.894816 B = 2911.912954 C = 4400.826541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.008 3.992 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.492 4.492 8 H 0.092 0.908 9 C 0.265 3.735 10 N -0.613 5.613 11 C 0.124 3.876 12 C 0.059 3.941 13 H 0.063 0.937 14 C -0.137 4.137 15 C -0.147 4.147 16 C 0.030 3.970 17 N -0.665 5.665 18 C 0.219 3.781 19 C -0.219 4.219 20 C -0.074 4.074 21 C -0.200 4.200 22 C -0.083 4.083 23 C -0.220 4.220 24 H 0.257 0.743 25 H 0.003 0.997 26 H 0.005 0.995 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.347 0.653 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -10.561 -3.405 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.189 4.189 3 Si 0.775 3.225 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.221 1.221 7 C -0.531 4.531 8 H 0.110 0.890 9 C 0.144 3.856 10 N -0.319 5.319 11 C 0.000 4.000 12 C -0.053 4.053 13 H 0.081 0.919 14 C -0.176 4.176 15 C -0.186 4.186 16 C -0.100 4.100 17 N -0.297 5.297 18 C 0.114 3.886 19 C -0.242 4.242 20 C -0.093 4.093 21 C -0.220 4.220 22 C -0.102 4.102 23 C -0.243 4.243 24 H 0.066 0.934 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.148 0.852 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.243 -10.113 -3.056 14.037 hybrid contribution -0.686 1.200 -0.711 1.554 sum 8.557 -8.912 -3.767 12.917 Atomic orbital electron populations 1.70083 1.07248 1.26905 1.53984 1.25585 0.95140 1.01811 0.96377 0.85660 0.79423 0.80713 0.76714 1.19417 1.21233 1.22052 1.22283 0.95393 0.90010 1.45415 0.88974 1.18837 0.87277 0.84316 0.95195 1.46867 1.47105 1.35524 1.02383 1.21760 0.95239 0.97689 0.85308 1.22785 0.97094 0.88839 0.96575 0.91932 1.22789 1.02496 0.98117 0.94239 1.23052 1.02312 0.95035 0.98215 1.23216 0.98936 0.97553 0.90308 1.63393 1.12980 1.12753 1.40612 1.18148 0.92378 0.91887 0.86217 1.20811 1.03556 1.00214 0.99587 1.21132 0.97929 0.98736 0.91467 1.21052 1.02248 0.99943 0.98803 1.21058 0.96454 0.95972 0.96678 1.20834 1.06587 1.04147 0.92703 0.93447 0.97895 0.97666 0.89070 0.91850 0.90178 0.90353 0.89572 0.92010 0.91168 0.92137 0.83171 0.85165 0.83715 0.84503 0.85714 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.91 13.29 21.45 0.28 -54.62 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.95 45.31 29.54 68.60 2.03 47.34 16 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.49 -25.94 6.57 25.60 0.17 -25.77 16 8 H 0.09 5.00 5.98 -2.91 -0.02 4.99 16 9 C 0.27 13.24 4.47 85.64 0.38 13.62 16 10 N -0.61 -25.24 2.55 -701.63 -1.79 -27.03 16 11 C 0.12 4.06 4.41 86.38 0.38 4.44 16 12 C 0.06 1.85 3.69 45.05 0.17 2.02 16 13 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 14 C -0.14 -3.22 6.57 31.47 0.21 -3.01 16 15 C -0.15 -3.53 7.06 31.80 0.22 -3.31 16 16 C 0.03 0.91 7.55 86.65 0.65 1.56 16 17 N -0.67 -25.15 4.30 -480.21 -2.07 -27.22 16 18 C 0.22 8.74 6.55 38.21 0.25 8.99 16 19 C -0.22 -7.13 9.21 22.40 0.21 -6.92 16 20 C -0.07 -2.09 10.04 22.25 0.22 -1.87 16 21 C -0.20 -5.86 10.04 22.29 0.22 -5.63 16 22 C -0.08 -2.87 10.04 22.25 0.22 -2.65 16 23 C -0.22 -9.25 9.21 22.40 0.21 -9.04 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.00 0.17 6.20 -2.39 -0.01 0.16 16 26 H 0.01 0.28 7.89 -2.39 -0.02 0.27 16 27 H 0.09 2.50 6.19 -2.39 -0.01 2.49 16 28 H 0.06 2.09 7.89 -2.39 -0.02 2.07 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.63 7.69 -2.39 -0.02 1.61 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.35 14.80 5.93 -89.69 -0.53 14.27 16 36 H 0.13 3.65 6.14 -2.91 -0.02 3.63 16 37 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.14 3.12 8.06 -2.91 -0.02 3.09 16 39 H 0.12 3.78 8.06 -2.91 -0.02 3.76 16 40 H 0.09 4.59 6.14 -2.91 -0.02 4.58 16 Total: -1.00 -61.00 313.24 2.93 -58.07 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.49 Total: 30.14 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.98 Total: -26.67 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -3.57 Total: -108.87 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -61.00 2.93 -58.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236189939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.022 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds