Wall clock time and date at job start Mon Mar 30 2020 06:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86793 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47089 * 239.99728 * 3 2 1 5 5 H 1.48499 * 109.47571 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47303 * 119.99874 * 3 2 1 7 7 C 1.39861 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 162.19324 * 7 2 1 9 9 C 1.41140 * 120.00290 * 341.91989 * 7 2 1 10 10 C 1.40880 * 120.15258 * 335.36667 * 9 7 2 11 11 C 1.36343 * 119.83517 * 179.75624 * 10 9 7 12 12 C 1.39568 * 120.15918 * 0.49446 * 11 10 9 13 13 N 1.38855 * 119.84074 * 179.73610 * 12 11 10 14 14 C 1.46495 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.52996 * 109.47325 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.46269 * 295.02128 * 15 14 13 17 17 C 1.53039 * 109.46422 * 175.05246 * 15 14 13 18 18 C 1.53120 * 109.28214 * 180.80260 * 17 15 14 19 19 C 1.53121 * 109.15742 * 57.65815 * 18 17 15 20 20 C 1.53046 * 109.27594 * 302.34662 * 19 18 17 21 21 N 1.46842 * 109.52513 * 59.18007 * 20 19 18 22 22 C 1.39572 * 120.31732 * 359.75988 * 12 11 10 23 23 C 1.36343 * 120.15901 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08506 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92141 * 180.20186 * 11 10 9 27 27 H 0.97006 * 120.00063 * 180.02562 * 13 12 11 28 28 H 1.09006 * 109.46936 * 300.00081 * 14 13 12 29 29 H 1.09004 * 109.46859 * 59.99834 * 14 13 12 30 30 H 1.09000 * 109.50543 * 300.75067 * 17 15 14 31 31 H 1.09000 * 109.50047 * 60.86313 * 17 15 14 32 32 H 1.08993 * 109.52370 * 297.75338 * 18 17 15 33 33 H 1.08996 * 109.57380 * 177.58935 * 18 17 15 34 34 H 1.08998 * 109.50313 * 182.40582 * 19 18 17 35 35 H 1.08999 * 109.53610 * 62.30537 * 19 18 17 36 36 H 1.09001 * 109.46067 * 299.16363 * 20 19 18 37 37 H 1.09007 * 109.45943 * 179.19983 * 20 19 18 38 38 H 1.00903 * 110.99793 * 62.35215 * 21 20 19 39 39 H 1.07993 * 119.92184 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.08303 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0495 -1.2338 -0.2855 9 6 1.3549 -2.4032 0.3804 10 6 0.2285 -2.3545 1.2251 11 6 -0.4008 -3.5096 1.5840 12 6 0.0747 -4.7389 1.1249 13 7 -0.5679 -5.9116 1.4990 14 6 -1.7424 -5.8566 2.3729 15 6 -2.2540 -7.2755 2.6295 16 1 -2.6099 -7.7078 1.6944 17 6 -3.4031 -7.2284 3.6392 18 6 -3.8986 -8.6520 3.9080 19 6 -2.7321 -9.5018 4.4197 20 6 -1.6024 -9.4830 3.3873 21 7 -1.1632 -8.0995 3.1657 22 6 1.1933 -4.7951 0.2922 23 6 1.8293 -3.6477 -0.0792 24 1 -0.4851 0.8400 0.0004 25 1 -0.1379 -1.4043 1.5847 26 1 -1.2664 -3.4736 2.2288 27 1 -0.2392 -6.7673 1.1816 28 1 -1.4687 -5.3925 3.3205 29 1 -2.5250 -5.2689 1.8931 30 1 -3.0516 -6.7835 4.5701 31 1 -4.2189 -6.6295 3.2343 32 1 -4.2861 -9.0832 2.9851 33 1 -4.6885 -8.6281 4.6587 34 1 -3.0685 -10.5273 4.5724 35 1 -2.3699 -9.0934 5.3630 36 1 -1.9613 -9.9050 2.4485 37 1 -0.7646 -10.0757 3.7550 38 1 -0.7900 -7.6985 4.0130 39 1 1.5561 -5.7498 -0.0590 40 1 2.6950 -3.6927 -0.7233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236235648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:18 Heat of formation + Delta-G solvation = 7.801079 kcal Electronic energy + Delta-G solvation = -18855.824249 eV Core-core repulsion = 16054.945042 eV Total energy + Delta-G solvation = -2800.879207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.24206 -37.69615 -34.97367 -33.12071 -31.81143 -31.26609 -29.36229 -28.48610 -25.94064 -24.01904 -23.24686 -21.91789 -20.79629 -20.42517 -19.72075 -17.12259 -16.27810 -15.55699 -15.39338 -15.01015 -14.76557 -14.58011 -14.19561 -13.76110 -13.23483 -13.00422 -12.64889 -12.40899 -12.20191 -12.16104 -11.83849 -11.62039 -11.37367 -11.33303 -11.06994 -10.95684 -10.79098 -10.75422 -10.48450 -10.38536 -9.62385 -9.20466 -9.13410 -8.43970 -8.39214 -7.40518 -6.56325 -6.26476 -3.94782 2.99557 3.17373 3.19082 3.21788 3.43912 4.06554 4.10929 4.37254 4.58617 4.72361 4.76758 4.84474 5.04521 5.15195 5.21587 5.32409 5.51615 5.61016 5.70851 5.74431 5.80070 5.87623 5.89750 5.99001 6.06743 6.22898 6.37591 6.41854 6.93948 7.02590 7.05696 7.28378 7.31818 7.44631 7.66055 7.78316 7.95398 8.23078 8.39589 8.61380 8.83219 8.95951 9.13798 9.24890 10.44866 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048076 B = 0.003563 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.267842 B = 7857.178888 C = 8251.704470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.469 4.469 8 H 0.071 0.929 9 C 0.072 3.928 10 C -0.124 4.124 11 C -0.168 4.168 12 C 0.098 3.902 13 N -0.751 5.751 14 C 0.147 3.853 15 C 0.079 3.921 16 H 0.082 0.918 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.159 4.159 20 C 0.057 3.943 21 N -0.675 5.675 22 C -0.161 4.161 23 C -0.185 4.185 24 H 0.275 0.725 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.392 0.608 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.342 0.658 39 H 0.086 0.914 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.867 -13.818 7.621 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.500 4.500 8 H 0.089 0.911 9 C 0.069 3.931 10 C -0.144 4.144 11 C -0.190 4.190 12 C 0.001 3.999 13 N -0.387 5.387 14 C 0.021 3.979 15 C -0.032 4.032 16 H 0.100 0.900 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.072 4.072 21 N -0.304 5.304 22 C -0.183 4.183 23 C -0.205 4.205 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.104 0.896 27 H 0.225 0.775 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.917 -13.688 7.079 16.891 hybrid contribution -0.243 0.612 0.698 0.960 sum -7.160 -13.076 7.777 16.815 Atomic orbital electron populations 1.69852 1.07320 1.28557 1.38028 1.25772 0.94637 1.00770 0.92815 0.86484 0.80130 0.80985 0.79680 1.19323 1.20660 1.19157 1.19320 0.97836 0.91454 1.41391 0.91086 1.17466 0.92595 0.91938 0.91114 1.20915 0.98171 0.96401 0.98866 1.20080 1.01614 0.92030 1.05320 1.17396 0.95441 0.85788 1.01296 1.43721 1.32259 1.05911 1.56799 1.20982 0.89128 0.93643 0.94157 1.21813 0.89679 0.94107 0.97584 0.89960 1.22219 0.99616 0.97052 1.00209 1.21535 0.97562 0.95351 1.01118 1.22281 0.97538 1.00294 0.99706 1.22015 0.96271 0.90764 0.98195 1.60572 1.32495 1.01969 1.35404 1.19805 0.97992 0.97009 1.03536 1.20547 1.02558 0.92640 1.04761 0.91393 0.86544 0.89617 0.77479 0.93937 0.93244 0.91730 0.91121 0.91929 0.92105 0.91734 0.92078 0.91096 0.90839 0.83935 0.89608 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.96 10.97 55.54 0.61 -21.35 16 2 C 0.07 1.97 5.13 -17.34 -0.09 1.88 16 3 Si 0.90 19.63 29.59 -169.99 -5.03 14.60 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.47 -13.04 9.03 -37.87 -0.34 -13.38 16 8 H 0.07 1.91 7.91 -52.49 -0.41 1.49 16 9 C 0.07 1.99 5.57 -106.79 -0.60 1.40 16 10 C -0.12 -3.32 8.64 -39.26 -0.34 -3.66 16 11 C -0.17 -4.05 9.23 -39.77 -0.37 -4.41 16 12 C 0.10 2.21 6.67 -83.69 -0.56 1.65 16 13 N -0.75 -13.49 5.53 -58.50 -0.32 -13.81 16 14 C 0.15 2.20 4.53 -4.05 -0.02 2.18 16 15 C 0.08 0.90 2.58 -67.72 -0.17 0.73 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.15 -1.46 5.36 -26.65 -0.14 -1.60 16 18 C -0.12 -0.98 6.00 -26.61 -0.16 -1.14 16 19 C -0.16 -1.25 6.08 -26.64 -0.16 -1.42 16 20 C 0.06 0.51 6.55 -3.83 -0.03 0.49 16 21 N -0.68 -7.41 5.94 -106.76 -0.63 -8.05 16 22 C -0.16 -3.75 9.82 -39.77 -0.39 -4.14 16 23 C -0.18 -4.72 9.74 -39.26 -0.38 -5.10 16 24 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 25 H 0.12 3.24 6.17 -52.48 -0.32 2.92 16 26 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 27 H 0.39 6.64 8.14 -40.82 -0.33 6.31 16 28 H 0.04 0.66 7.93 -51.93 -0.41 0.25 16 29 H 0.05 0.78 7.93 -51.93 -0.41 0.37 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.34 3.78 8.79 -39.29 -0.35 3.43 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -28.33 319.52 -10.69 -39.02 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.38 Total: 11.32 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -3.75 Total: -26.54 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.35 Total: -43.21 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.33 -10.69 -39.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.816 kcal (2) G-P(sol) polarization free energy of solvation -28.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds