Wall clock time and date at job start Mon Mar 30 2020 06:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86793 * 119.99849 * 2 1 4 4 H 1.48500 * 109.47089 * 239.99728 * 3 2 1 5 5 H 1.48499 * 109.47571 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47303 * 119.99874 * 3 2 1 7 7 C 1.39861 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99909 * 162.19324 * 7 2 1 9 9 C 1.41140 * 120.00290 * 341.91989 * 7 2 1 10 10 C 1.40880 * 120.15258 * 335.36667 * 9 7 2 11 11 C 1.36343 * 119.83517 * 179.75624 * 10 9 7 12 12 C 1.39568 * 120.15918 * 0.49446 * 11 10 9 13 13 N 1.38855 * 119.84074 * 179.73610 * 12 11 10 14 14 C 1.46495 * 120.00347 * 0.02562 * 13 12 11 15 15 C 1.52996 * 109.47325 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.46269 * 295.02128 * 15 14 13 17 17 C 1.53039 * 109.46422 * 175.05246 * 15 14 13 18 18 C 1.53120 * 109.28214 * 180.80260 * 17 15 14 19 19 C 1.53121 * 109.15742 * 57.65815 * 18 17 15 20 20 C 1.53046 * 109.27594 * 302.34662 * 19 18 17 21 21 N 1.46842 * 109.52513 * 59.18007 * 20 19 18 22 22 C 1.39572 * 120.31732 * 359.75988 * 12 11 10 23 23 C 1.36343 * 120.15901 * 359.97438 * 22 12 11 24 24 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.08506 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.92141 * 180.20186 * 11 10 9 27 27 H 0.97006 * 120.00063 * 180.02562 * 13 12 11 28 28 H 1.09006 * 109.46936 * 300.00081 * 14 13 12 29 29 H 1.09004 * 109.46859 * 59.99834 * 14 13 12 30 30 H 1.09000 * 109.50543 * 300.75067 * 17 15 14 31 31 H 1.09000 * 109.50047 * 60.86313 * 17 15 14 32 32 H 1.08993 * 109.52370 * 297.75338 * 18 17 15 33 33 H 1.08996 * 109.57380 * 177.58935 * 18 17 15 34 34 H 1.08998 * 109.50313 * 182.40582 * 19 18 17 35 35 H 1.08999 * 109.53610 * 62.30537 * 19 18 17 36 36 H 1.09001 * 109.46067 * 299.16363 * 20 19 18 37 37 H 1.09007 * 109.45943 * 179.19983 * 20 19 18 38 38 H 1.00903 * 110.99793 * 62.35215 * 21 20 19 39 39 H 1.07993 * 119.92184 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.08303 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6964 -1.2125 5 1 1.2780 2.7465 0.0006 6 1 3.0967 1.6964 1.2125 7 6 2.0083 -1.2112 0.0005 8 1 3.0495 -1.2338 -0.2855 9 6 1.3549 -2.4032 0.3804 10 6 0.2285 -2.3545 1.2251 11 6 -0.4008 -3.5096 1.5840 12 6 0.0747 -4.7389 1.1249 13 7 -0.5679 -5.9116 1.4990 14 6 -1.7424 -5.8566 2.3729 15 6 -2.2540 -7.2755 2.6295 16 1 -2.6099 -7.7078 1.6944 17 6 -3.4031 -7.2284 3.6392 18 6 -3.8986 -8.6520 3.9080 19 6 -2.7321 -9.5018 4.4197 20 6 -1.6024 -9.4830 3.3873 21 7 -1.1632 -8.0995 3.1657 22 6 1.1933 -4.7951 0.2922 23 6 1.8293 -3.6477 -0.0792 24 1 -0.4851 0.8400 0.0004 25 1 -0.1379 -1.4043 1.5847 26 1 -1.2664 -3.4736 2.2288 27 1 -0.2392 -6.7673 1.1816 28 1 -1.4687 -5.3925 3.3205 29 1 -2.5250 -5.2689 1.8931 30 1 -3.0516 -6.7835 4.5701 31 1 -4.2189 -6.6295 3.2343 32 1 -4.2861 -9.0832 2.9851 33 1 -4.6885 -8.6281 4.6587 34 1 -3.0685 -10.5273 4.5724 35 1 -2.3699 -9.0934 5.3630 36 1 -1.9613 -9.9050 2.4485 37 1 -0.7646 -10.0757 3.7550 38 1 -0.7900 -7.6985 4.0130 39 1 1.5561 -5.7498 -0.0590 40 1 2.6950 -3.6927 -0.7233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236235648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:17 Heat of formation + Delta-G solvation = -8.944508 kcal Electronic energy + Delta-G solvation = -18856.550392 eV Core-core repulsion = 16054.945042 eV Total energy + Delta-G solvation = -2801.605350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.23458 -39.40691 -36.58042 -34.84355 -32.66723 -32.42490 -31.30650 -30.19822 -27.33439 -25.61513 -24.15052 -23.31380 -22.32809 -21.47909 -21.24372 -19.11856 -17.81818 -16.79011 -16.72239 -16.36063 -15.89999 -15.64517 -15.52339 -15.00163 -14.49161 -14.45099 -14.31158 -13.89290 -13.67049 -13.55980 -13.06060 -12.92489 -12.88113 -12.71493 -12.49581 -12.26746 -12.11117 -12.02392 -11.56345 -11.54348 -11.33050 -11.14222 -11.02727 -10.24066 -9.37305 -9.22810 -8.51885 -8.08937 -5.96709 1.14590 1.21973 1.40907 1.51961 1.62438 2.29162 2.87376 2.92849 3.34794 3.79383 3.88428 3.91615 4.04882 4.18854 4.33204 4.37466 4.47813 4.52028 4.55085 4.73709 4.79518 4.88955 4.93017 5.04717 5.06985 5.11101 5.16997 5.18708 5.20125 5.31136 5.39875 5.49382 5.72748 5.84196 6.00930 6.13294 6.21890 6.43387 6.47382 6.72281 6.93295 7.11428 7.21914 7.43126 8.51191 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.048076 B = 0.003563 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.267842 B = 7857.178888 C = 8251.704470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.067 0.933 9 C 0.033 3.967 10 C -0.142 4.142 11 C -0.178 4.178 12 C 0.117 3.883 13 N -0.739 5.739 14 C 0.144 3.856 15 C 0.091 3.909 16 H 0.080 0.920 17 C -0.148 4.148 18 C -0.116 4.116 19 C -0.154 4.154 20 C 0.058 3.942 21 N -0.686 5.686 22 C -0.168 4.168 23 C -0.194 4.194 24 H 0.282 0.718 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.400 0.600 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.342 0.658 39 H 0.115 0.885 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 -15.263 8.305 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.188 1.188 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.201 4.201 12 C 0.017 3.983 13 N -0.374 5.374 14 C 0.018 3.982 15 C -0.020 4.020 16 H 0.099 0.901 17 C -0.187 4.187 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.071 4.071 21 N -0.316 5.316 22 C -0.191 4.191 23 C -0.214 4.214 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.235 0.765 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.160 0.840 39 H 0.133 0.867 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.444 -15.189 7.773 18.615 hybrid contribution -0.152 0.862 0.517 1.017 sum -7.596 -14.326 8.290 18.212 Atomic orbital electron populations 1.69919 1.08742 1.29763 1.38718 1.26606 0.95462 1.04064 0.91889 0.85348 0.78754 0.76318 0.79765 1.18654 1.19457 1.18808 1.19562 0.97977 0.92862 1.43557 0.91486 1.17792 0.93750 0.92991 0.92484 1.20851 0.98902 0.96663 0.99830 1.20225 1.02132 0.91913 1.05804 1.17510 0.94670 0.86760 0.99403 1.43774 1.32448 1.04756 1.56396 1.21144 0.87679 0.96192 0.93139 1.21617 0.90296 0.91846 0.98194 0.90144 1.22173 0.98839 0.98235 0.99486 1.21528 0.97964 0.94283 1.01561 1.22227 0.96865 1.01005 0.99185 1.22050 0.97014 0.89452 0.98590 1.60563 1.32530 1.02889 1.35611 1.20088 0.98017 0.97527 1.03451 1.20755 1.02936 0.92871 1.04822 0.90824 0.88423 0.87913 0.76492 0.94188 0.93837 0.91818 0.91039 0.91745 0.91158 0.90385 0.92113 0.91156 0.90053 0.84002 0.86718 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.00 10.97 21.81 0.24 -46.76 16 2 C 0.03 1.69 5.13 85.22 0.44 2.13 16 3 Si 0.98 40.91 29.59 68.60 2.03 42.94 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.51 -29.27 9.03 23.38 0.21 -29.06 16 8 H 0.07 3.74 7.91 -2.91 -0.02 3.71 16 9 C 0.03 1.87 5.57 -21.27 -0.12 1.75 16 10 C -0.14 -7.89 8.64 22.47 0.19 -7.70 16 11 C -0.18 -8.61 9.23 22.15 0.20 -8.40 16 12 C 0.12 5.12 6.67 38.67 0.26 5.38 16 13 N -0.74 -25.16 5.53 -338.99 -1.88 -27.04 16 14 C 0.14 4.06 4.53 86.38 0.39 4.46 16 15 C 0.09 1.90 2.58 44.94 0.12 2.01 16 16 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 17 C -0.15 -2.53 5.36 30.65 0.16 -2.37 16 18 C -0.12 -1.62 6.00 30.67 0.18 -1.43 16 19 C -0.15 -1.99 6.08 30.65 0.19 -1.80 16 20 C 0.06 0.89 6.55 86.33 0.57 1.45 16 21 N -0.69 -13.54 5.94 -491.68 -2.92 -16.46 16 22 C -0.17 -7.68 9.82 22.15 0.22 -7.46 16 23 C -0.19 -10.01 9.74 22.48 0.22 -9.79 16 24 H 0.28 14.31 8.30 -92.71 -0.77 13.54 16 25 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16 26 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 27 H 0.40 12.57 8.14 -92.70 -0.75 11.81 16 28 H 0.04 1.18 7.93 -2.38 -0.02 1.16 16 29 H 0.04 1.31 7.93 -2.39 -0.02 1.29 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.34 6.84 8.79 -89.69 -0.79 6.05 16 39 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 40 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -61.91 319.52 0.19 -61.72 By element: Atomic # 1 Polarization: 36.94 SS G_CDS: -0.51 Total: 36.43 kcal Atomic # 6 Polarization: -54.06 SS G_CDS: 3.23 Total: -50.83 kcal Atomic # 7 Polarization: -85.70 SS G_CDS: -4.56 Total: -90.26 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -61.91 0.19 -61.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.778 kcal (2) G-P(sol) polarization free energy of solvation -61.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds