Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47403 * 300.00125 * 3 2 1 6 6 H 1.48502 * 109.47041 * 60.00308 * 3 2 1 7 7 C 1.39867 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 162.82783 * 7 2 1 9 9 C 1.41136 * 119.99616 * 342.83605 * 7 2 1 10 10 C 1.40891 * 120.15575 * 334.46143 * 9 7 2 11 11 C 1.36329 * 119.83605 * 180.30181 * 10 9 7 12 12 C 1.39577 * 120.16375 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.84358 * 179.97438 * 12 11 10 14 14 C 1.46495 * 119.99693 * 0.02689 * 13 12 11 15 15 C 1.53005 * 109.46962 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46348 * 64.99392 * 15 14 13 17 17 C 1.53035 * 109.46214 * 184.97989 * 15 14 13 18 18 C 1.53120 * 109.27678 * 179.20633 * 17 15 14 19 19 C 1.53126 * 109.15068 * 302.32714 * 18 17 15 20 20 C 1.53040 * 109.27786 * 57.66084 * 19 18 17 21 21 N 1.46848 * 109.45806 * 305.01911 * 15 14 13 22 22 C 1.39568 * 120.31269 * 0.02562 * 12 11 10 23 23 C 1.36339 * 120.16048 * 0.02562 * 22 12 11 24 24 H 0.96999 * 119.99673 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.07878 * 0.27839 * 10 9 7 26 26 H 1.08002 * 119.92076 * 179.97438 * 11 10 9 27 27 H 0.96994 * 119.99792 * 180.02562 * 13 12 11 28 28 H 1.09004 * 109.47533 * 299.99507 * 14 13 12 29 29 H 1.08994 * 109.47676 * 60.00007 * 14 13 12 30 30 H 1.09004 * 109.50251 * 299.13022 * 17 15 14 31 31 H 1.09001 * 109.50624 * 59.25415 * 17 15 14 32 32 H 1.09003 * 109.52543 * 182.42990 * 18 17 15 33 33 H 1.09003 * 109.58659 * 62.26333 * 18 17 15 34 34 H 1.09001 * 109.49963 * 297.71699 * 19 18 17 35 35 H 1.09004 * 109.50074 * 177.60232 * 19 18 17 36 36 H 1.08997 * 109.45805 * 180.80277 * 20 19 18 37 37 H 1.09001 * 109.45034 * 60.83229 * 20 19 18 38 38 H 1.00894 * 111.00306 * 302.33427 * 21 15 14 39 39 H 1.08001 * 119.92053 * 179.97438 * 22 12 11 40 40 H 1.07999 * 120.07834 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8844 2.3965 -1.2124 6 1 1.8844 2.3964 1.2126 7 6 2.0084 -1.2113 -0.0005 8 1 3.0523 -1.2320 -0.2767 9 6 1.3498 -2.4065 0.3596 10 6 0.2230 -2.3667 1.2045 11 6 -0.4045 -3.5257 1.5533 12 6 0.0664 -4.7495 1.0750 13 7 -0.5775 -5.9260 1.4349 14 6 -1.7485 -5.8806 2.3140 15 6 -2.2633 -7.3018 2.5515 16 1 -1.5135 -7.8729 3.0989 17 6 -3.5572 -7.2459 3.3667 18 6 -4.0791 -8.6687 3.5848 19 6 -4.2974 -9.3378 2.2249 20 6 -2.9821 -9.3330 1.4425 21 7 -2.5249 -7.9495 1.2598 22 6 1.1820 -4.7965 0.2377 23 6 1.8201 -3.6454 -0.1184 24 1 -0.4849 0.8401 0.0004 25 1 -0.1424 -1.4205 1.5753 26 1 -1.2681 -3.4968 2.2012 27 1 -0.2520 -6.7777 1.1042 28 1 -1.4702 -5.4307 3.2671 29 1 -2.5316 -5.2845 1.8458 30 1 -3.3595 -6.7790 4.3317 31 1 -4.3032 -6.6634 2.8259 32 1 -5.0234 -8.6311 4.1280 33 1 -3.3509 -9.2410 4.1596 34 1 -5.0551 -8.7881 1.6664 35 1 -4.6285 -10.3655 2.3739 36 1 -3.1376 -9.7959 0.4680 37 1 -2.2289 -9.8945 1.9953 38 1 -3.1886 -7.4181 0.7166 39 1 1.5412 -5.7469 -0.1283 40 1 2.6835 -3.6834 -0.7661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236235846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = 7.767690 kcal Electronic energy + Delta-G solvation = -18861.620011 eV Core-core repulsion = 16060.739356 eV Total energy + Delta-G solvation = -2800.880655 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.23907 -37.69884 -34.97318 -33.11538 -31.80652 -31.26429 -29.36718 -28.48405 -25.93993 -24.01884 -23.24408 -21.91746 -20.79444 -20.42239 -19.72444 -17.12290 -16.27803 -15.55497 -15.39178 -15.00724 -14.75917 -14.58158 -14.19342 -13.75984 -13.23080 -13.00581 -12.66501 -12.40131 -12.20648 -12.12337 -11.84504 -11.64104 -11.44307 -11.28456 -11.01974 -10.98625 -10.81715 -10.70712 -10.48177 -10.39054 -9.60508 -9.20596 -9.14388 -8.44642 -8.38157 -7.40816 -6.55679 -6.25977 -3.95179 2.96678 3.17736 3.19892 3.25138 3.42595 4.06859 4.11475 4.37348 4.58880 4.72627 4.76969 4.84723 5.04889 5.15455 5.21882 5.32371 5.51806 5.61128 5.71239 5.74541 5.80197 5.87791 5.89409 5.98685 6.06305 6.23310 6.37315 6.41624 6.94480 7.02437 7.05506 7.28516 7.32461 7.44684 7.65856 7.78336 7.95209 8.23477 8.39423 8.61221 8.83414 8.95751 9.14089 9.24727 10.45529 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.047097 B = 0.003571 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.371971 B = 7839.204640 C = 8190.871254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.074 3.926 3 Si 0.901 3.099 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.275 1.275 7 C -0.467 4.467 8 H 0.072 0.928 9 C 0.071 3.929 10 C -0.122 4.122 11 C -0.169 4.169 12 C 0.099 3.901 13 N -0.751 5.751 14 C 0.147 3.853 15 C 0.079 3.921 16 H 0.082 0.918 17 C -0.151 4.151 18 C -0.118 4.118 19 C -0.159 4.159 20 C 0.058 3.942 21 N -0.675 5.675 22 C -0.162 4.162 23 C -0.184 4.184 24 H 0.274 0.726 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.392 0.608 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.343 0.657 39 H 0.086 0.914 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -13.766 5.638 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.499 4.499 8 H 0.090 0.910 9 C 0.068 3.932 10 C -0.142 4.142 11 C -0.191 4.191 12 C 0.002 3.998 13 N -0.387 5.387 14 C 0.021 3.979 15 C -0.032 4.032 16 H 0.100 0.900 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.072 4.072 21 N -0.305 5.305 22 C -0.184 4.184 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.104 0.896 27 H 0.225 0.775 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.877 -13.686 5.622 16.762 hybrid contribution -0.643 0.662 0.192 0.943 sum -8.520 -13.023 5.815 16.614 Atomic orbital electron populations 1.69868 1.07303 1.28305 1.38417 1.25775 0.94648 1.00776 0.92861 0.86384 0.80977 0.81748 0.78227 1.18692 1.20361 1.20054 1.19380 0.97567 0.91275 1.41677 0.91023 1.17480 0.92589 0.91985 0.91130 1.20915 0.98170 0.96322 0.98807 1.20082 1.01699 0.92073 1.05259 1.17404 0.95398 0.85777 1.01250 1.43725 1.32319 1.06094 1.56541 1.20985 0.89028 0.93704 0.94213 1.21813 0.95914 0.95703 0.89736 0.89983 1.22221 0.98378 0.97019 1.01489 1.21537 1.00982 0.96017 0.97017 1.22285 0.99391 1.00973 0.97192 1.22012 0.94494 0.90907 0.99820 1.60570 1.50540 1.02704 1.16662 1.19807 0.98101 0.97037 1.03458 1.20556 1.02554 0.92693 1.04602 0.91532 0.86537 0.89609 0.77473 0.93297 0.93871 0.91152 0.91696 0.92114 0.91940 0.92057 0.91730 0.90829 0.91110 0.83872 0.89599 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.01 10.97 55.54 0.61 -21.40 16 2 C 0.07 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.90 19.64 29.59 -169.99 -5.03 14.61 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.47 -13.01 9.03 -37.87 -0.34 -13.35 16 8 H 0.07 1.93 7.90 -52.49 -0.41 1.52 16 9 C 0.07 1.97 5.57 -106.79 -0.59 1.37 16 10 C -0.12 -3.28 8.63 -39.27 -0.34 -3.62 16 11 C -0.17 -4.06 9.23 -39.77 -0.37 -4.43 16 12 C 0.10 2.23 6.67 -83.68 -0.56 1.67 16 13 N -0.75 -13.47 5.53 -58.50 -0.32 -13.79 16 14 C 0.15 2.19 4.53 -4.04 -0.02 2.17 16 15 C 0.08 0.90 2.58 -67.72 -0.17 0.73 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.15 -1.46 5.36 -26.65 -0.14 -1.61 16 18 C -0.12 -0.98 6.00 -26.60 -0.16 -1.14 16 19 C -0.16 -1.27 6.08 -26.65 -0.16 -1.43 16 20 C 0.06 0.52 6.55 -3.83 -0.03 0.49 16 21 N -0.68 -7.52 5.94 -106.76 -0.63 -8.16 16 22 C -0.16 -3.76 9.82 -39.77 -0.39 -4.15 16 23 C -0.18 -4.69 9.74 -39.26 -0.38 -5.07 16 24 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 25 H 0.12 3.24 6.19 -52.49 -0.32 2.92 16 26 H 0.09 1.88 6.68 -52.49 -0.35 1.53 16 27 H 0.39 6.64 8.14 -40.82 -0.33 6.30 16 28 H 0.05 0.75 7.93 -51.93 -0.41 0.34 16 29 H 0.04 0.68 7.93 -51.93 -0.41 0.27 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.34 3.89 8.79 -39.29 -0.35 3.55 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 40 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 319.54 15.07 4.82 4.82 Total: -1.00 -28.38 319.54 -10.68 -39.07 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -6.38 Total: 11.36 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.75 Total: -26.50 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: -0.35 Total: -43.35 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.61 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.38 -10.68 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.833 kcal (2) G-P(sol) polarization free energy of solvation -28.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds