Wall clock time and date at job start Mon Mar 30 2020 06:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86801 * 120.00099 * 2 1 4 4 H 1.48504 * 109.47155 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47403 * 300.00125 * 3 2 1 6 6 H 1.48502 * 109.47041 * 60.00308 * 3 2 1 7 7 C 1.39867 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 162.82783 * 7 2 1 9 9 C 1.41136 * 119.99616 * 342.83605 * 7 2 1 10 10 C 1.40891 * 120.15575 * 334.46143 * 9 7 2 11 11 C 1.36329 * 119.83605 * 180.30181 * 10 9 7 12 12 C 1.39577 * 120.16375 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.84358 * 179.97438 * 12 11 10 14 14 C 1.46495 * 119.99693 * 0.02689 * 13 12 11 15 15 C 1.53005 * 109.46962 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.46348 * 64.99392 * 15 14 13 17 17 C 1.53035 * 109.46214 * 184.97989 * 15 14 13 18 18 C 1.53120 * 109.27678 * 179.20633 * 17 15 14 19 19 C 1.53126 * 109.15068 * 302.32714 * 18 17 15 20 20 C 1.53040 * 109.27786 * 57.66084 * 19 18 17 21 21 N 1.46848 * 109.45806 * 305.01911 * 15 14 13 22 22 C 1.39568 * 120.31269 * 0.02562 * 12 11 10 23 23 C 1.36339 * 120.16048 * 0.02562 * 22 12 11 24 24 H 0.96999 * 119.99673 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.07878 * 0.27839 * 10 9 7 26 26 H 1.08002 * 119.92076 * 179.97438 * 11 10 9 27 27 H 0.96994 * 119.99792 * 180.02562 * 13 12 11 28 28 H 1.09004 * 109.47533 * 299.99507 * 14 13 12 29 29 H 1.08994 * 109.47676 * 60.00007 * 14 13 12 30 30 H 1.09004 * 109.50251 * 299.13022 * 17 15 14 31 31 H 1.09001 * 109.50624 * 59.25415 * 17 15 14 32 32 H 1.09003 * 109.52543 * 182.42990 * 18 17 15 33 33 H 1.09003 * 109.58659 * 62.26333 * 18 17 15 34 34 H 1.09001 * 109.49963 * 297.71699 * 19 18 17 35 35 H 1.09004 * 109.50074 * 177.60232 * 19 18 17 36 36 H 1.08997 * 109.45805 * 180.80277 * 20 19 18 37 37 H 1.09001 * 109.45034 * 60.83229 * 20 19 18 38 38 H 1.00894 * 111.00306 * 302.33427 * 21 15 14 39 39 H 1.08001 * 119.92053 * 179.97438 * 22 12 11 40 40 H 1.07999 * 120.07834 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.7031 1.3463 -0.0006 5 1 1.8844 2.3965 -1.2124 6 1 1.8844 2.3964 1.2126 7 6 2.0084 -1.2113 -0.0005 8 1 3.0523 -1.2320 -0.2767 9 6 1.3498 -2.4065 0.3596 10 6 0.2230 -2.3667 1.2045 11 6 -0.4045 -3.5257 1.5533 12 6 0.0664 -4.7495 1.0750 13 7 -0.5775 -5.9260 1.4349 14 6 -1.7485 -5.8806 2.3140 15 6 -2.2633 -7.3018 2.5515 16 1 -1.5135 -7.8729 3.0989 17 6 -3.5572 -7.2459 3.3667 18 6 -4.0791 -8.6687 3.5848 19 6 -4.2974 -9.3378 2.2249 20 6 -2.9821 -9.3330 1.4425 21 7 -2.5249 -7.9495 1.2598 22 6 1.1820 -4.7965 0.2377 23 6 1.8201 -3.6454 -0.1184 24 1 -0.4849 0.8401 0.0004 25 1 -0.1424 -1.4205 1.5753 26 1 -1.2681 -3.4968 2.2012 27 1 -0.2520 -6.7777 1.1042 28 1 -1.4702 -5.4307 3.2671 29 1 -2.5316 -5.2845 1.8458 30 1 -3.3595 -6.7790 4.3317 31 1 -4.3032 -6.6634 2.8259 32 1 -5.0234 -8.6311 4.1280 33 1 -3.3509 -9.2410 4.1596 34 1 -5.0551 -8.7881 1.6664 35 1 -4.6285 -10.3655 2.3739 36 1 -3.1376 -9.7959 0.4680 37 1 -2.2289 -9.8945 1.9953 38 1 -3.1886 -7.4181 0.7166 39 1 1.5412 -5.7469 -0.1283 40 1 2.6835 -3.6834 -0.7661 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236235846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:20 Heat of formation + Delta-G solvation = -9.024536 kcal Electronic energy + Delta-G solvation = -18862.348176 eV Core-core repulsion = 16060.739356 eV Total energy + Delta-G solvation = -2801.608821 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23462 -39.40820 -36.57917 -34.83967 -32.66609 -32.42495 -31.31017 -30.19696 -27.33500 -25.61680 -24.15042 -23.31337 -22.32828 -21.47949 -21.24309 -19.11981 -17.81961 -16.78627 -16.72327 -16.36275 -15.90216 -15.64356 -15.51930 -15.00255 -14.48046 -14.43930 -14.35811 -13.88421 -13.68663 -13.42634 -13.28212 -12.92646 -12.73600 -12.71054 -12.53689 -12.25488 -12.10512 -12.04305 -11.56426 -11.52402 -11.32932 -11.14207 -11.03903 -10.23910 -9.37463 -9.22981 -8.51327 -8.08380 -5.97203 1.13242 1.21388 1.41063 1.55620 1.60158 2.29438 2.86864 2.93454 3.34746 3.79385 3.88064 3.91461 4.05103 4.18924 4.33244 4.37485 4.47718 4.51881 4.55128 4.73805 4.79555 4.88793 4.92747 5.04555 5.06858 5.11104 5.16889 5.18696 5.20174 5.31318 5.39930 5.49483 5.72745 5.84174 6.00855 6.13644 6.22177 6.43217 6.46134 6.72423 6.93324 7.11680 7.21821 7.42981 8.51999 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.047097 B = 0.003571 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.371971 B = 7839.204640 C = 8190.871254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.261 1.261 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.506 4.506 8 H 0.066 0.934 9 C 0.032 3.968 10 C -0.141 4.141 11 C -0.179 4.179 12 C 0.118 3.882 13 N -0.739 5.739 14 C 0.144 3.856 15 C 0.091 3.909 16 H 0.083 0.917 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.154 4.154 20 C 0.058 3.942 21 N -0.687 5.687 22 C -0.169 4.169 23 C -0.193 4.193 24 H 0.281 0.719 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.400 0.600 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.341 0.659 39 H 0.115 0.885 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 -15.224 6.163 18.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.201 4.201 12 C 0.018 3.982 13 N -0.374 5.374 14 C 0.018 3.982 15 C -0.019 4.019 16 H 0.101 0.899 17 C -0.187 4.187 18 C -0.153 4.153 19 C -0.193 4.193 20 C -0.071 4.071 21 N -0.317 5.317 22 C -0.191 4.191 23 C -0.213 4.213 24 H 0.091 0.909 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.235 0.765 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.159 0.841 39 H 0.133 0.867 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.538 -15.200 6.159 18.490 hybrid contribution -0.519 0.919 0.049 1.056 sum -9.057 -14.281 6.208 18.015 Atomic orbital electron populations 1.69930 1.08718 1.29579 1.39097 1.26606 0.95478 1.04062 0.91947 0.85244 0.79352 0.76895 0.78641 1.18483 1.19397 1.19147 1.19600 0.97627 0.92680 1.43867 0.91547 1.17801 0.93748 0.93026 0.92518 1.20846 0.98892 0.96592 0.99748 1.20226 1.02212 0.91937 1.05760 1.17517 0.94622 0.86759 0.99337 1.43777 1.32513 1.04917 1.56145 1.21152 0.87587 0.96239 0.93204 1.21629 0.96699 0.93296 0.90318 0.89911 1.22176 0.97244 0.98165 1.01164 1.21530 1.01452 0.94923 0.97394 1.22232 0.98660 1.01748 0.96690 1.22048 0.95037 0.89521 1.00481 1.60568 1.51030 1.03700 1.16404 1.20090 0.98116 0.97536 1.03402 1.20763 1.02927 0.92938 1.04644 0.90885 0.88441 0.87898 0.76484 0.93452 0.94553 0.90880 0.92008 0.91187 0.91598 0.92253 0.90355 0.90161 0.91018 0.84107 0.86704 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.12 10.97 21.82 0.24 -46.88 16 2 C 0.03 1.63 5.14 85.23 0.44 2.07 16 3 Si 0.98 41.00 29.59 68.60 2.03 43.03 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.51 -29.17 9.03 23.38 0.21 -28.96 16 8 H 0.07 3.72 7.90 -2.91 -0.02 3.70 16 9 C 0.03 1.83 5.57 -21.27 -0.12 1.71 16 10 C -0.14 -7.79 8.63 22.47 0.19 -7.60 16 11 C -0.18 -8.63 9.23 22.15 0.20 -8.42 16 12 C 0.12 5.16 6.67 38.67 0.26 5.42 16 13 N -0.74 -25.09 5.53 -338.98 -1.88 -26.97 16 14 C 0.14 4.04 4.53 86.38 0.39 4.44 16 15 C 0.09 1.89 2.58 44.94 0.12 2.01 16 16 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 17 C -0.15 -2.53 5.36 30.65 0.16 -2.37 16 18 C -0.12 -1.61 6.00 30.68 0.18 -1.42 16 19 C -0.15 -2.03 6.08 30.65 0.19 -1.85 16 20 C 0.06 0.90 6.55 86.33 0.57 1.47 16 21 N -0.69 -13.83 5.94 -491.67 -2.92 -16.75 16 22 C -0.17 -7.69 9.82 22.15 0.22 -7.48 16 23 C -0.19 -9.95 9.74 22.47 0.22 -9.73 16 24 H 0.28 14.22 8.30 -92.71 -0.77 13.45 16 25 H 0.10 5.68 6.19 -2.91 -0.02 5.66 16 26 H 0.10 4.49 6.68 -2.91 -0.02 4.47 16 27 H 0.40 12.54 8.14 -92.71 -0.75 11.78 16 28 H 0.05 1.38 7.93 -2.38 -0.02 1.36 16 29 H 0.04 1.10 7.93 -2.39 -0.02 1.08 16 30 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.34 7.11 8.79 -89.70 -0.79 6.32 16 39 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 40 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -62.02 319.54 0.19 -61.83 By element: Atomic # 1 Polarization: 36.95 SS G_CDS: -0.51 Total: 36.44 kcal Atomic # 6 Polarization: -53.94 SS G_CDS: 3.23 Total: -50.70 kcal Atomic # 7 Polarization: -86.04 SS G_CDS: -4.56 Total: -90.60 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -62.02 0.19 -61.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236235846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.804 kcal (2) G-P(sol) polarization free energy of solvation -62.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds