Wall clock time and date at job start Mon Mar 30 2020 07:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.09003 * 109.47412 * 38.08532 * 3 2 1 5 5 C 1.50703 * 109.47044 * 158.08968 * 3 2 1 6 6 H 1.08002 * 120.00053 * 115.50537 * 5 3 2 7 7 C 1.37875 * 119.99803 * 295.22414 * 5 3 2 8 8 N 1.31515 * 119.99977 * 0.27698 * 7 5 3 9 9 Si 1.86801 * 119.99995 * 180.27648 * 7 5 3 10 10 H 1.48498 * 109.47266 * 90.00189 * 9 7 5 11 11 H 1.48500 * 109.47055 * 210.00331 * 9 7 5 12 12 H 1.48498 * 109.46931 * 330.00356 * 9 7 5 13 13 N 1.46899 * 109.46763 * 278.08607 * 3 2 1 14 14 C 1.39724 * 111.00263 * 33.25645 * 13 3 2 15 15 C 1.39094 * 118.86751 * 282.50931 * 14 13 3 16 16 C 1.38114 * 120.22286 * 179.73284 * 15 14 13 17 17 C 1.38254 * 120.30283 * 359.97438 * 16 15 14 18 18 C 1.38271 * 119.97499 * 0.12134 * 17 16 15 19 19 C 1.38653 * 120.00425 * 359.97438 * 18 17 16 20 20 N 1.40469 * 119.46577 * 179.44440 * 19 18 17 21 21 C 1.47275 * 117.63300 * 168.70381 * 20 19 18 22 22 C 1.46563 * 110.99708 * 159.84818 * 13 3 2 23 23 H 1.08998 * 109.52775 * 168.11059 * 22 13 3 24 24 C 1.52994 * 109.52924 * 47.89305 * 22 13 3 25 25 H 1.09003 * 109.47077 * 173.11278 * 1 2 3 26 26 H 1.08996 * 109.46847 * 293.11324 * 1 2 3 27 27 H 1.09001 * 109.46913 * 53.11593 * 1 2 3 28 28 H 1.09000 * 109.47122 * 239.99674 * 2 1 3 29 29 H 1.09003 * 109.46639 * 119.99570 * 2 1 3 30 30 H 0.96998 * 119.99749 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.88017 * 359.69979 * 15 14 13 32 32 H 1.08004 * 119.84958 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.01223 * 180.10324 * 17 16 15 34 34 H 1.08005 * 119.99792 * 179.97438 * 18 17 16 35 35 H 0.96999 * 121.18821 * 348.68131 * 20 19 18 36 36 H 1.09002 * 109.90753 * 160.60561 * 21 20 19 37 37 H 1.09007 * 109.90170 * 281.66842 * 21 20 19 38 38 H 1.08999 * 109.47432 * 63.06538 * 24 22 13 39 39 H 1.09001 * 109.47159 * 183.06045 * 24 22 13 40 40 H 1.08993 * 109.47352 * 303.05864 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3985 2.0547 0.6339 5 6 3.4502 1.4767 0.5302 6 1 4.2617 1.7835 -0.1131 7 6 3.7037 1.1220 1.8382 8 7 2.7156 0.7485 2.6215 9 14 5.4508 1.1718 2.4976 10 1 5.7260 2.5144 3.0694 11 1 5.6103 0.1413 3.5549 12 1 6.4048 0.8993 1.3928 13 7 2.0195 1.9690 -1.3712 14 6 0.9538 1.4320 -2.0980 15 6 1.0628 0.1360 -2.5912 16 6 0.0241 -0.4245 -3.3085 17 6 -1.1319 0.2971 -3.5417 18 6 -1.2505 1.5870 -3.0579 19 6 -0.2106 2.1561 -2.3387 20 7 -0.3385 3.4715 -1.8626 21 6 0.6656 3.9489 -0.8967 22 6 2.0326 3.4346 -1.3713 23 1 2.2290 3.7971 -2.3803 24 6 3.1245 3.9363 -0.4243 25 1 -0.3633 -1.0203 -0.1232 26 1 -0.3633 0.4034 0.9452 27 1 -0.3633 0.6168 -0.8220 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.8940 0.4985 3.5416 31 1 1.9629 -0.4336 -2.4130 32 1 0.1153 -1.4311 -3.6891 33 1 -1.9418 -0.1464 -4.1018 34 1 -2.1532 2.1512 -3.2402 35 1 -1.0622 4.0450 -2.1595 36 1 0.6679 5.0386 -0.8719 37 1 0.4426 3.5558 0.0953 38 1 4.0989 3.6104 -0.7880 39 1 3.0977 5.0252 -0.3834 40 1 2.9547 3.5310 0.5731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252685584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:35 Heat of formation + Delta-G solvation = 62.488248 kcal Electronic energy + Delta-G solvation = -21101.814424 eV Core-core repulsion = 18303.306630 eV Total energy + Delta-G solvation = -2798.507794 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50071 -36.80532 -35.27782 -32.67720 -31.97268 -30.21467 -29.52077 -27.52575 -26.64219 -24.30789 -23.06627 -21.75471 -21.43053 -20.68615 -18.22066 -16.87914 -16.41047 -15.92855 -15.52520 -14.85579 -14.33197 -14.00644 -13.73225 -13.55635 -13.08073 -12.83719 -12.58553 -12.07479 -11.83373 -11.61637 -11.36247 -11.16481 -11.11228 -10.94121 -10.87003 -10.62129 -10.57170 -10.35789 -9.80373 -9.69261 -9.50358 -9.18394 -8.99347 -8.41232 -8.16949 -7.22964 -6.62215 -6.01219 -4.01892 2.04203 2.18169 3.29279 3.37293 3.40910 3.87468 4.36555 4.47120 4.78359 5.27335 5.37122 5.48346 5.56736 5.64510 5.74111 5.90085 5.97852 6.09073 6.16397 6.31074 6.38385 6.42987 6.49110 6.60934 6.63964 6.76444 6.82502 6.94712 7.07883 7.15021 7.17819 7.26132 7.33935 7.39918 7.49951 7.70978 7.82845 7.87303 8.14236 8.26175 8.34906 8.63882 9.01087 9.57436 11.04778 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.008167 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.669369 B = 3427.412180 C = 3972.242572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C 0.223 3.777 4 H 0.018 0.982 5 C -0.494 4.494 6 H 0.067 0.933 7 C 0.056 3.944 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.487 5.487 14 C 0.077 3.923 15 C -0.077 4.077 16 C -0.163 4.163 17 C -0.110 4.110 18 C -0.184 4.184 19 C 0.159 3.841 20 N -0.757 5.757 21 C 0.090 3.910 22 C 0.082 3.918 23 H 0.068 0.932 24 C -0.144 4.144 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.108 0.892 35 H 0.395 0.605 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.528 3.216 -8.089 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.165 4.165 3 C 0.120 3.880 4 H 0.036 0.964 5 C -0.532 4.532 6 H 0.085 0.915 7 C -0.145 4.145 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.204 5.204 14 C -0.024 4.024 15 C -0.097 4.097 16 C -0.184 4.184 17 C -0.130 4.130 18 C -0.207 4.207 19 C 0.056 3.944 20 N -0.390 5.390 21 C -0.037 4.037 22 C -0.028 4.028 23 H 0.086 0.914 24 C -0.201 4.201 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.147 0.853 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.229 0.771 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.942 3.072 -7.930 9.836 hybrid contribution -0.190 0.479 0.774 0.930 sum -5.132 3.552 -7.156 9.496 Atomic orbital electron populations 1.22278 0.98821 0.99711 1.00963 1.22006 0.92614 0.99657 1.02221 1.19480 0.96733 0.91636 0.80176 0.96403 1.21228 0.92807 1.43672 0.95542 0.91514 1.24919 0.96828 0.95755 0.97004 1.69961 1.30720 1.45413 1.06829 0.86603 0.85176 0.77627 0.78690 1.20824 1.21425 1.19856 1.59133 1.37663 1.05982 1.17605 1.18369 0.88235 0.94752 1.01046 1.20950 0.99214 0.93854 0.95718 1.20680 0.94726 0.99914 1.03066 1.20622 0.97610 0.93980 1.00762 1.20339 0.97893 0.96756 1.05698 1.18051 0.92812 0.86575 0.96981 1.44723 1.32569 1.11645 1.50076 1.22335 0.90059 0.98650 0.92639 1.21877 0.93736 0.87888 0.99257 0.91421 1.22150 0.97991 0.97365 1.02641 0.95120 0.94467 0.92144 0.92684 0.89646 0.93034 0.85334 0.87094 0.87235 0.87373 0.77096 0.91004 0.91768 0.91862 0.94872 0.88174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.75 37.16 0.33 -3.16 16 2 C -0.13 -2.99 4.81 -26.73 -0.13 -3.12 16 3 C 0.22 5.30 1.17 -68.86 -0.08 5.22 16 4 H 0.02 0.49 5.74 -51.93 -0.30 0.19 16 5 C -0.49 -12.61 5.64 -34.44 -0.19 -12.80 16 6 H 0.07 1.73 6.46 -52.49 -0.34 1.39 16 7 C 0.06 1.47 5.16 -17.82 -0.09 1.38 16 8 N -0.89 -24.45 11.80 55.43 0.65 -23.80 16 9 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.49 -10.36 4.36 -157.14 -0.68 -11.05 16 14 C 0.08 1.53 3.31 -83.58 -0.28 1.25 16 15 C -0.08 -1.44 6.44 -39.31 -0.25 -1.69 16 16 C -0.16 -2.64 9.86 -39.62 -0.39 -3.03 16 17 C -0.11 -1.68 9.98 -39.56 -0.39 -2.07 16 18 C -0.18 -2.93 9.59 -39.42 -0.38 -3.31 16 19 C 0.16 2.86 5.17 -83.38 -0.43 2.43 16 20 N -0.76 -12.19 5.93 -57.56 -0.34 -12.53 16 21 C 0.09 1.52 6.39 -3.32 -0.02 1.50 16 22 C 0.08 1.55 2.95 -67.60 -0.20 1.35 16 23 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 24 C -0.14 -2.72 7.81 37.15 0.29 -2.43 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.26 3.21 -51.93 -0.17 1.10 16 28 H 0.05 1.25 4.44 -51.93 -0.23 1.02 16 29 H 0.09 2.26 6.26 -51.93 -0.33 1.94 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 31 H 0.13 2.47 6.35 -52.49 -0.33 2.13 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.39 5.20 8.89 -40.82 -0.36 4.84 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 1.26 6.49 -51.93 -0.34 0.93 16 38 H 0.06 1.23 7.08 -51.93 -0.37 0.87 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 2.21 5.30 -51.93 -0.28 1.93 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -27.31 293.37 -8.75 -36.06 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.55 Total: 9.80 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.23 Total: -18.48 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.37 Total: -47.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.31 -8.75 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252685584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.548 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds