Wall clock time and date at job start Mon Mar 30 2020 07:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46989 * 2 1 4 4 H 1.09003 * 109.47412 * 38.08532 * 3 2 1 5 5 C 1.50703 * 109.47044 * 158.08968 * 3 2 1 6 6 H 1.08002 * 120.00053 * 115.50537 * 5 3 2 7 7 C 1.37875 * 119.99803 * 295.22414 * 5 3 2 8 8 N 1.31515 * 119.99977 * 0.27698 * 7 5 3 9 9 Si 1.86801 * 119.99995 * 180.27648 * 7 5 3 10 10 H 1.48498 * 109.47266 * 90.00189 * 9 7 5 11 11 H 1.48500 * 109.47055 * 210.00331 * 9 7 5 12 12 H 1.48498 * 109.46931 * 330.00356 * 9 7 5 13 13 N 1.46899 * 109.46763 * 278.08607 * 3 2 1 14 14 C 1.39724 * 111.00263 * 33.25645 * 13 3 2 15 15 C 1.39094 * 118.86751 * 282.50931 * 14 13 3 16 16 C 1.38114 * 120.22286 * 179.73284 * 15 14 13 17 17 C 1.38254 * 120.30283 * 359.97438 * 16 15 14 18 18 C 1.38271 * 119.97499 * 0.12134 * 17 16 15 19 19 C 1.38653 * 120.00425 * 359.97438 * 18 17 16 20 20 N 1.40469 * 119.46577 * 179.44440 * 19 18 17 21 21 C 1.47275 * 117.63300 * 168.70381 * 20 19 18 22 22 C 1.46563 * 110.99708 * 159.84818 * 13 3 2 23 23 H 1.08998 * 109.52775 * 168.11059 * 22 13 3 24 24 C 1.52994 * 109.52924 * 47.89305 * 22 13 3 25 25 H 1.09003 * 109.47077 * 173.11278 * 1 2 3 26 26 H 1.08996 * 109.46847 * 293.11324 * 1 2 3 27 27 H 1.09001 * 109.46913 * 53.11593 * 1 2 3 28 28 H 1.09000 * 109.47122 * 239.99674 * 2 1 3 29 29 H 1.09003 * 109.46639 * 119.99570 * 2 1 3 30 30 H 0.96998 * 119.99749 * 179.97438 * 8 7 5 31 31 H 1.08001 * 119.88017 * 359.69979 * 15 14 13 32 32 H 1.08004 * 119.84958 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.01223 * 180.10324 * 17 16 15 34 34 H 1.08005 * 119.99792 * 179.97438 * 18 17 16 35 35 H 0.96999 * 121.18821 * 348.68131 * 20 19 18 36 36 H 1.09002 * 109.90753 * 160.60561 * 21 20 19 37 37 H 1.09007 * 109.90170 * 281.66842 * 21 20 19 38 38 H 1.08999 * 109.47432 * 63.06538 * 24 22 13 39 39 H 1.09001 * 109.47159 * 183.06045 * 24 22 13 40 40 H 1.08993 * 109.47352 * 303.05864 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3985 2.0547 0.6339 5 6 3.4502 1.4767 0.5302 6 1 4.2617 1.7835 -0.1131 7 6 3.7037 1.1220 1.8382 8 7 2.7156 0.7485 2.6215 9 14 5.4508 1.1718 2.4976 10 1 5.7260 2.5144 3.0694 11 1 5.6103 0.1413 3.5549 12 1 6.4048 0.8993 1.3928 13 7 2.0195 1.9690 -1.3712 14 6 0.9538 1.4320 -2.0980 15 6 1.0628 0.1360 -2.5912 16 6 0.0241 -0.4245 -3.3085 17 6 -1.1319 0.2971 -3.5417 18 6 -1.2505 1.5870 -3.0579 19 6 -0.2106 2.1561 -2.3387 20 7 -0.3385 3.4715 -1.8626 21 6 0.6656 3.9489 -0.8967 22 6 2.0326 3.4346 -1.3713 23 1 2.2290 3.7971 -2.3803 24 6 3.1245 3.9363 -0.4243 25 1 -0.3633 -1.0203 -0.1232 26 1 -0.3633 0.4034 0.9452 27 1 -0.3633 0.6168 -0.8220 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.8940 0.4985 3.5416 31 1 1.9629 -0.4336 -2.4130 32 1 0.1153 -1.4311 -3.6891 33 1 -1.9418 -0.1464 -4.1018 34 1 -2.1532 2.1512 -3.2402 35 1 -1.0622 4.0450 -2.1595 36 1 0.6679 5.0386 -0.8719 37 1 0.4426 3.5558 0.0953 38 1 4.0989 3.6104 -0.7880 39 1 3.0977 5.0252 -0.3834 40 1 2.9547 3.5310 0.5731 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252685584.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:34 Heat of formation + Delta-G solvation = 45.838327 kcal Electronic energy + Delta-G solvation = -21102.536419 eV Core-core repulsion = 18303.306630 eV Total energy + Delta-G solvation = -2799.229788 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.96590 -38.23026 -36.81386 -34.50929 -33.53785 -31.84948 -30.91142 -29.15550 -28.28972 -25.79049 -24.84031 -23.19154 -22.83790 -22.42866 -19.75924 -18.34965 -18.18935 -17.41009 -17.11105 -16.45361 -16.05183 -15.47061 -15.25259 -14.96123 -14.54354 -14.35044 -14.28416 -13.62932 -13.46838 -13.19464 -13.04099 -12.83117 -12.80752 -12.62184 -12.46987 -12.20424 -12.10124 -12.00136 -11.58120 -11.38419 -11.07833 -10.84652 -10.82859 -10.34247 -9.73570 -8.69124 -8.03028 -8.02215 -6.08336 0.70605 0.86036 1.42755 1.45460 1.54474 2.45836 2.61059 3.08177 3.24411 3.31257 4.00647 4.14462 4.19721 4.33093 4.39318 4.54453 4.59737 4.63911 4.70724 4.73840 4.77534 4.83505 4.88090 5.02267 5.14087 5.26576 5.27207 5.36477 5.39827 5.47698 5.63495 5.66161 5.80114 5.81940 5.86222 5.90842 6.06736 6.36562 6.39576 6.54103 6.96892 7.01269 7.07721 7.53742 9.02090 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.008167 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.669369 B = 3427.412180 C = 3972.242572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.237 3.763 4 H -0.016 1.016 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.011 3.989 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.271 1.271 13 N -0.500 5.500 14 C 0.042 3.958 15 C -0.092 4.092 16 C -0.164 4.164 17 C -0.100 4.100 18 C -0.183 4.183 19 C 0.147 3.853 20 N -0.750 5.750 21 C 0.098 3.902 22 C 0.078 3.922 23 H 0.076 0.924 24 C -0.134 4.134 25 H 0.044 0.956 26 H 0.014 0.986 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.257 0.743 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.031 0.969 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 3.754 -10.060 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C 0.133 3.867 4 H 0.002 0.998 5 C -0.531 4.531 6 H 0.077 0.923 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.196 1.196 13 N -0.217 5.217 14 C -0.059 4.059 15 C -0.113 4.113 16 C -0.184 4.184 17 C -0.119 4.119 18 C -0.205 4.205 19 C 0.043 3.957 20 N -0.384 5.384 21 C -0.029 4.029 22 C -0.031 4.031 23 H 0.095 0.905 24 C -0.192 4.192 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.153 0.847 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.233 3.628 -9.931 12.274 hybrid contribution 0.137 0.309 1.274 1.318 sum -6.095 3.937 -8.658 11.296 Atomic orbital electron populations 1.22137 0.97334 1.00660 1.00190 1.21867 0.93950 0.99337 1.00748 1.19098 0.94911 0.91164 0.81515 0.99819 1.21410 0.93579 1.42586 0.95497 0.92276 1.25560 0.99927 0.95814 0.97380 1.70089 1.32364 1.46746 1.06851 0.85713 0.81363 0.77601 0.77924 1.20188 1.21628 1.19561 1.59029 1.39423 1.07379 1.15912 1.18525 0.89035 0.95828 1.02478 1.20976 0.99640 0.93736 0.96911 1.20976 0.94246 1.01054 1.02136 1.21076 0.97890 0.93465 0.99485 1.20729 0.98097 0.97275 1.04438 1.18253 0.92839 0.87193 0.97400 1.44646 1.32830 1.11421 1.49542 1.22150 0.89255 1.00369 0.91134 1.21948 0.94747 0.86856 0.99538 0.90542 1.21971 0.97480 0.99328 1.00432 0.93654 0.96654 0.90862 0.91911 0.93179 0.93375 0.86983 0.84704 0.83569 0.84511 0.75156 0.87572 0.95079 0.93111 0.91533 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.42 8.75 71.98 0.63 -5.79 16 2 C -0.12 -5.90 4.81 30.59 0.15 -5.75 16 3 C 0.24 11.74 1.17 44.17 0.05 11.79 16 4 H -0.02 -0.87 5.74 -2.39 -0.01 -0.88 16 5 C -0.49 -26.07 5.64 25.60 0.14 -25.93 16 6 H 0.06 3.16 6.46 -2.91 -0.02 3.14 16 7 C 0.01 0.61 5.16 84.65 0.44 1.04 16 8 N -0.92 -52.66 11.80 21.45 0.25 -52.41 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 N -0.50 -21.61 4.36 -651.06 -2.84 -24.45 16 14 C 0.04 1.64 3.31 38.32 0.13 1.77 16 15 C -0.09 -3.38 6.44 22.45 0.14 -3.24 16 16 C -0.16 -4.84 9.86 22.24 0.22 -4.62 16 17 C -0.10 -2.62 9.98 22.28 0.22 -2.40 16 18 C -0.18 -5.13 9.59 22.38 0.21 -4.92 16 19 C 0.15 4.98 5.17 38.09 0.20 5.17 16 20 N -0.75 -22.58 5.93 -336.02 -1.99 -24.57 16 21 C 0.10 3.24 6.39 86.42 0.55 3.79 16 22 C 0.08 2.93 2.95 45.17 0.13 3.07 16 23 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 24 C -0.13 -5.11 7.81 71.98 0.56 -4.55 16 25 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 3.03 3.21 -2.39 -0.01 3.02 16 28 H 0.06 2.93 4.44 -2.39 -0.01 2.92 16 29 H 0.05 2.78 6.26 -2.39 -0.01 2.76 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.11 4.37 6.35 -2.91 -0.02 4.35 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 33 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 34 H 0.14 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.41 9.56 8.89 -92.71 -0.82 8.74 16 36 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.03 1.25 6.49 -2.38 -0.02 1.24 16 38 H 0.05 2.00 7.08 -2.39 -0.02 1.99 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.93 5.30 -2.39 -0.01 2.92 16 Total: -1.00 -61.13 293.37 1.46 -59.67 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.23 Total: 26.92 kcal Atomic # 6 Polarization: -34.35 SS G_CDS: 3.78 Total: -30.56 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -4.58 Total: -101.43 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -61.13 1.46 -59.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252685584.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.509 kcal (2) G-P(sol) polarization free energy of solvation -61.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds