Wall clock time and date at job start Mon Mar 30 2020 07:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 H 1.08999 * 109.47302 * 301.46708 * 3 2 1 5 5 C 1.50701 * 109.47208 * 181.46805 * 3 2 1 6 6 H 1.08001 * 119.99732 * 245.66922 * 5 3 2 7 7 C 1.37875 * 120.00078 * 65.66492 * 5 3 2 8 8 N 1.31508 * 120.00099 * 10.03495 * 7 5 3 9 9 Si 1.86797 * 119.99807 * 190.03064 * 7 5 3 10 10 H 1.48502 * 109.47288 * 60.00441 * 9 7 5 11 11 H 1.48496 * 109.47483 * 300.00503 * 9 7 5 12 12 H 1.48504 * 109.47301 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.46747 * 61.46657 * 3 2 1 14 14 C 1.39739 * 110.99424 * 208.08305 * 13 3 2 15 15 C 1.39085 * 118.86070 * 31.79717 * 14 13 3 16 16 C 1.38119 * 120.22579 * 179.72073 * 15 14 13 17 17 C 1.38261 * 120.29458 * 0.02562 * 16 15 14 18 18 C 1.38268 * 119.97623 * 0.11267 * 17 16 15 19 19 C 1.38652 * 120.00799 * 359.96175 * 18 17 16 20 20 N 1.40468 * 119.46507 * 179.78374 * 19 18 17 21 21 C 1.47276 * 117.62929 * 168.64414 * 20 19 18 22 22 C 1.46552 * 111.00188 * 81.48518 * 13 3 2 23 23 H 1.08999 * 109.53128 * 58.93951 * 22 13 3 24 24 C 1.52995 * 109.53337 * 298.78734 * 22 13 3 25 25 H 1.08993 * 109.47546 * 64.56996 * 1 2 3 26 26 H 1.09008 * 109.47038 * 184.57382 * 1 2 3 27 27 H 1.09002 * 109.46742 * 304.57027 * 1 2 3 28 28 H 1.09008 * 109.46671 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47530 * 120.00569 * 2 1 3 30 30 H 0.97005 * 120.00410 * 3.87345 * 8 7 5 31 31 H 1.08004 * 119.88871 * 359.73668 * 15 14 13 32 32 H 1.07995 * 119.85454 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.00572 * 180.10786 * 17 16 15 34 34 H 1.08004 * 119.99124 * 180.02562 * 18 17 16 35 35 H 0.97004 * 121.18550 * 348.66880 * 20 19 18 36 36 H 1.08999 * 109.90980 * 281.70455 * 21 20 19 37 37 H 1.09005 * 109.97512 * 160.58818 * 21 20 19 38 38 H 1.09008 * 109.46805 * 77.98994 * 24 22 13 39 39 H 1.08995 * 109.47440 * 197.98540 * 24 22 13 40 40 H 1.09003 * 109.47244 * 317.99551 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6554 1.9639 -0.8765 5 6 3.5466 1.4426 -0.0364 6 1 4.1070 1.8208 0.8058 7 6 4.2095 0.9600 -1.1448 8 7 3.5404 0.6845 -2.2429 9 14 6.0580 0.6975 -1.0868 10 1 6.3858 -0.2807 -0.0187 11 1 6.7326 1.9888 -0.7993 12 1 6.5253 0.1762 -2.3964 13 7 1.5795 2.1246 1.2168 14 6 1.4483 3.4990 1.0011 15 6 1.0864 3.9484 -0.2644 16 6 0.9431 5.3005 -0.5074 17 6 1.1587 6.2177 0.5045 18 6 1.5217 5.7824 1.7656 19 6 1.6686 4.4265 2.0156 20 7 2.0423 3.9972 3.2998 21 6 1.9399 2.5581 3.5955 22 6 2.4415 1.8029 2.3575 23 1 3.4656 2.1039 2.1367 24 6 2.3970 0.2969 2.6236 25 1 -0.3634 0.4412 -0.9280 26 1 -0.3633 -1.0245 0.0820 27 1 -0.3633 0.5831 0.8462 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.5902 0.8734 -2.2923 31 1 0.9165 3.2377 -1.0597 32 1 0.6614 5.6428 -1.4922 33 1 1.0436 7.2737 0.3097 34 1 1.6898 6.4986 2.5564 35 1 2.3562 4.6262 3.9682 36 1 0.9017 2.2932 3.7958 37 1 2.5590 2.3101 4.4578 38 1 3.0273 -0.2188 1.8990 39 1 2.7614 0.0950 3.6308 40 1 1.3707 -0.0584 2.5304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252685585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:37 Heat of formation + Delta-G solvation = 55.855321 kcal Electronic energy + Delta-G solvation = -20874.981740 eV Core-core repulsion = 18076.186321 eV Total energy + Delta-G solvation = -2798.795419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.11808 -37.01751 -35.39244 -32.83534 -31.57383 -31.20885 -29.31101 -27.41687 -26.33980 -24.42900 -23.35619 -22.04867 -21.60192 -19.53361 -19.06958 -17.21089 -16.81180 -16.29185 -15.28412 -14.80668 -14.15914 -13.78581 -13.51178 -13.29978 -13.23881 -13.09661 -12.74945 -12.22064 -12.21315 -11.86166 -11.55314 -11.42091 -10.98636 -10.84639 -10.70177 -10.66658 -10.51569 -10.20055 -10.09760 -9.91866 -9.57850 -9.52851 -9.00544 -8.42829 -8.24446 -7.34415 -6.45942 -6.25762 -4.13575 2.11898 2.24563 3.39331 3.40389 3.58536 3.89695 4.38536 4.48479 4.87961 5.26733 5.30881 5.41934 5.59425 5.62914 5.76682 5.93182 5.97106 6.02396 6.07783 6.17221 6.19464 6.22332 6.37252 6.41605 6.55797 6.70439 6.73797 6.83425 6.86209 6.90934 6.98915 7.10003 7.22650 7.36738 7.41616 7.47376 7.75370 7.78547 8.06277 8.25726 8.38249 8.48684 8.77069 9.56325 10.94872 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.008941 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.737614 B = 3130.924190 C = 3397.580057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.198 3.802 4 H 0.046 0.954 5 C -0.624 4.624 6 H 0.058 0.942 7 C 0.033 3.967 8 N -0.902 5.902 9 Si 1.057 2.943 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.282 1.282 13 N -0.477 5.477 14 C 0.099 3.901 15 C -0.122 4.122 16 C -0.144 4.144 17 C -0.129 4.129 18 C -0.171 4.171 19 C 0.157 3.843 20 N -0.761 5.761 21 C 0.125 3.875 22 C 0.072 3.928 23 H 0.075 0.925 24 C -0.142 4.142 25 H 0.037 0.963 26 H 0.030 0.970 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.271 0.729 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.395 0.605 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 4.121 8.893 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.094 3.906 4 H 0.064 0.936 5 C -0.662 4.662 6 H 0.076 0.924 7 C -0.173 4.173 8 N -0.537 5.537 9 Si 0.885 3.115 10 H -0.214 1.214 11 H -0.216 1.216 12 H -0.208 1.208 13 N -0.190 5.190 14 C -0.004 4.004 15 C -0.144 4.144 16 C -0.164 4.164 17 C -0.149 4.149 18 C -0.195 4.195 19 C 0.055 3.945 20 N -0.396 5.396 21 C 0.000 4.000 22 C -0.036 4.036 23 H 0.092 0.908 24 C -0.199 4.199 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.229 0.771 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.894 3.080 8.139 9.171 hybrid contribution -0.456 1.135 0.958 1.554 sum -3.349 4.216 9.097 10.571 Atomic orbital electron populations 1.21743 0.98366 0.99086 1.00868 1.22181 0.93041 0.99428 1.02636 1.19727 0.94333 0.90521 0.86025 0.93643 1.22424 0.91486 1.47140 1.05170 0.92397 1.25599 1.06137 0.93591 0.92019 1.70791 1.11161 1.44567 1.27193 0.83717 0.75175 0.76495 0.76072 1.21414 1.21637 1.20754 1.58708 1.47384 1.05089 1.07788 1.18472 1.00989 0.88560 0.92363 1.20988 1.02450 0.95658 0.95278 1.20671 1.04201 0.92907 0.98612 1.20568 1.03009 0.98410 0.92942 1.20300 1.08455 0.92940 0.97766 1.17526 0.99296 0.92139 0.85498 1.44624 1.76014 1.07321 1.11607 1.21821 1.00278 0.80581 0.97327 1.21823 0.96839 0.95573 0.89385 0.90768 1.22077 1.02494 0.95032 1.00313 0.94422 0.95048 0.92692 0.91993 0.91019 0.91755 0.85551 0.87202 0.87272 0.87268 0.77070 0.92683 0.90883 0.89801 0.93831 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.80 37.16 0.36 -2.38 16 2 C -0.13 -2.94 4.66 -26.73 -0.12 -3.07 16 3 C 0.20 4.62 1.09 -68.87 -0.08 4.55 16 4 H 0.05 1.17 4.12 -51.93 -0.21 0.95 16 5 C -0.62 -16.16 6.96 -34.44 -0.24 -16.40 16 6 H 0.06 1.54 5.17 -52.49 -0.27 1.27 16 7 C 0.03 0.88 5.18 -17.82 -0.09 0.79 16 8 N -0.90 -25.67 12.89 55.43 0.71 -24.96 16 9 Si 1.06 24.44 29.92 -169.99 -5.09 19.35 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.48 -9.98 3.49 -157.22 -0.55 -10.53 16 14 C 0.10 2.09 5.80 -83.58 -0.48 1.61 16 15 C -0.12 -2.55 8.98 -39.31 -0.35 -2.90 16 16 C -0.14 -2.62 10.03 -39.62 -0.40 -3.02 16 17 C -0.13 -2.16 10.05 -39.56 -0.40 -2.56 16 18 C -0.17 -2.91 9.90 -39.42 -0.39 -3.30 16 19 C 0.16 2.97 6.48 -83.38 -0.54 2.43 16 20 N -0.76 -12.24 5.93 -57.63 -0.34 -12.58 16 21 C 0.13 1.97 6.57 -3.38 -0.02 1.94 16 22 C 0.07 1.37 1.99 -67.67 -0.13 1.23 16 23 H 0.07 1.64 5.48 -51.93 -0.28 1.35 16 24 C -0.14 -2.45 7.45 37.15 0.28 -2.17 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.05 1.05 7.51 -51.93 -0.39 0.66 16 28 H 0.06 1.51 6.59 -51.92 -0.34 1.17 16 29 H 0.07 1.50 3.65 -51.93 -0.19 1.31 16 30 H 0.27 7.69 6.35 -40.82 -0.26 7.44 16 31 H 0.13 2.76 5.70 -52.48 -0.30 2.46 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.39 5.21 8.89 -40.82 -0.36 4.85 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.65 5.60 -51.92 -0.29 1.36 16 39 H 0.04 0.62 8.02 -51.93 -0.42 0.21 16 40 H 0.06 1.03 7.16 -51.93 -0.37 0.66 16 LS Contribution 299.44 15.07 4.51 4.51 Total: -1.00 -28.37 299.44 -8.80 -37.18 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.45 Total: 10.27 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -2.61 Total: -23.24 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.18 Total: -48.07 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -5.09 Total: 19.35 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.37 -8.80 -37.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252685585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.034 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds