Wall clock time and date at job start Mon Mar 30 2020 07:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47191 * 2 1 4 4 H 1.08999 * 109.47302 * 301.46708 * 3 2 1 5 5 C 1.50701 * 109.47208 * 181.46805 * 3 2 1 6 6 H 1.08001 * 119.99732 * 245.66922 * 5 3 2 7 7 C 1.37875 * 120.00078 * 65.66492 * 5 3 2 8 8 N 1.31508 * 120.00099 * 10.03495 * 7 5 3 9 9 Si 1.86797 * 119.99807 * 190.03064 * 7 5 3 10 10 H 1.48502 * 109.47288 * 60.00441 * 9 7 5 11 11 H 1.48496 * 109.47483 * 300.00503 * 9 7 5 12 12 H 1.48504 * 109.47301 * 180.02562 * 9 7 5 13 13 N 1.46897 * 109.46747 * 61.46657 * 3 2 1 14 14 C 1.39739 * 110.99424 * 208.08305 * 13 3 2 15 15 C 1.39085 * 118.86070 * 31.79717 * 14 13 3 16 16 C 1.38119 * 120.22579 * 179.72073 * 15 14 13 17 17 C 1.38261 * 120.29458 * 0.02562 * 16 15 14 18 18 C 1.38268 * 119.97623 * 0.11267 * 17 16 15 19 19 C 1.38652 * 120.00799 * 359.96175 * 18 17 16 20 20 N 1.40468 * 119.46507 * 179.78374 * 19 18 17 21 21 C 1.47276 * 117.62929 * 168.64414 * 20 19 18 22 22 C 1.46552 * 111.00188 * 81.48518 * 13 3 2 23 23 H 1.08999 * 109.53128 * 58.93951 * 22 13 3 24 24 C 1.52995 * 109.53337 * 298.78734 * 22 13 3 25 25 H 1.08993 * 109.47546 * 64.56996 * 1 2 3 26 26 H 1.09008 * 109.47038 * 184.57382 * 1 2 3 27 27 H 1.09002 * 109.46742 * 304.57027 * 1 2 3 28 28 H 1.09008 * 109.46671 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47530 * 120.00569 * 2 1 3 30 30 H 0.97005 * 120.00410 * 3.87345 * 8 7 5 31 31 H 1.08004 * 119.88871 * 359.73668 * 15 14 13 32 32 H 1.07995 * 119.85454 * 180.02562 * 16 15 14 33 33 H 1.08001 * 120.00572 * 180.10786 * 17 16 15 34 34 H 1.08004 * 119.99124 * 180.02562 * 18 17 16 35 35 H 0.97004 * 121.18550 * 348.66880 * 20 19 18 36 36 H 1.08999 * 109.90980 * 281.70455 * 21 20 19 37 37 H 1.09005 * 109.97512 * 160.58818 * 21 20 19 38 38 H 1.09008 * 109.46805 * 77.98994 * 24 22 13 39 39 H 1.08995 * 109.47440 * 197.98540 * 24 22 13 40 40 H 1.09003 * 109.47244 * 317.99551 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6554 1.9639 -0.8765 5 6 3.5466 1.4426 -0.0364 6 1 4.1070 1.8208 0.8058 7 6 4.2095 0.9600 -1.1448 8 7 3.5404 0.6845 -2.2429 9 14 6.0580 0.6975 -1.0868 10 1 6.3858 -0.2807 -0.0187 11 1 6.7326 1.9888 -0.7993 12 1 6.5253 0.1762 -2.3964 13 7 1.5795 2.1246 1.2168 14 6 1.4483 3.4990 1.0011 15 6 1.0864 3.9484 -0.2644 16 6 0.9431 5.3005 -0.5074 17 6 1.1587 6.2177 0.5045 18 6 1.5217 5.7824 1.7656 19 6 1.6686 4.4265 2.0156 20 7 2.0423 3.9972 3.2998 21 6 1.9399 2.5581 3.5955 22 6 2.4415 1.8029 2.3575 23 1 3.4656 2.1039 2.1367 24 6 2.3970 0.2969 2.6236 25 1 -0.3634 0.4412 -0.9280 26 1 -0.3633 -1.0245 0.0820 27 1 -0.3633 0.5831 0.8462 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.5902 0.8734 -2.2923 31 1 0.9165 3.2377 -1.0597 32 1 0.6614 5.6428 -1.4922 33 1 1.0436 7.2737 0.3097 34 1 1.6898 6.4986 2.5564 35 1 2.3562 4.6262 3.9682 36 1 0.9017 2.2932 3.7958 37 1 2.5590 2.3101 4.4578 38 1 3.0273 -0.2188 1.8990 39 1 2.7614 0.0950 3.6308 40 1 1.3707 -0.0584 2.5304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252685585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:37 Heat of formation + Delta-G solvation = 39.091483 kcal Electronic energy + Delta-G solvation = -20875.708674 eV Core-core repulsion = 18076.186321 eV Total energy + Delta-G solvation = -2799.522354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.62013 -38.55362 -36.86235 -34.63737 -33.21323 -32.76154 -30.73330 -28.99120 -27.98930 -26.02755 -25.03306 -23.60151 -23.07565 -21.27272 -20.58143 -18.74515 -18.58658 -17.71185 -16.82396 -16.35888 -15.72504 -15.51222 -15.07240 -14.89187 -14.71242 -14.59204 -14.28387 -13.78601 -13.74156 -13.48504 -13.01025 -12.93206 -12.65054 -12.48540 -12.31345 -12.18502 -12.09679 -11.99655 -11.69366 -11.63162 -11.28743 -11.03641 -10.68824 -10.27217 -10.06887 -8.82615 -8.55231 -7.78327 -6.25757 0.65998 0.80230 1.49380 1.54925 1.73682 2.55546 2.63292 2.92538 3.21210 3.38227 3.93455 3.98679 4.27404 4.32412 4.37404 4.45373 4.52290 4.58052 4.63003 4.63323 4.73457 4.76651 4.85225 4.97055 5.01682 5.14734 5.20800 5.25327 5.34814 5.37135 5.41358 5.53592 5.59466 5.71137 5.84201 5.98294 5.99106 6.13679 6.36175 6.53084 6.62760 6.81172 7.08479 7.51053 8.80614 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.008941 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.737614 B = 3130.924190 C = 3397.580057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C 0.205 3.795 4 H 0.016 0.984 5 C -0.618 4.618 6 H 0.050 0.950 7 C -0.016 4.016 8 N -0.929 5.929 9 Si 1.098 2.902 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.287 1.287 13 N -0.475 5.475 14 C 0.060 3.940 15 C -0.148 4.148 16 C -0.156 4.156 17 C -0.120 4.120 18 C -0.170 4.170 19 C 0.149 3.851 20 N -0.754 5.754 21 C 0.132 3.868 22 C 0.067 3.933 23 H 0.040 0.960 24 C -0.134 4.134 25 H 0.028 0.972 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.029 0.971 29 H 0.082 0.918 30 H 0.259 0.741 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.412 0.588 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 5.413 11.603 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.166 4.166 3 C 0.099 3.901 4 H 0.034 0.966 5 C -0.656 4.656 6 H 0.068 0.932 7 C -0.217 4.217 8 N -0.566 5.566 9 Si 0.922 3.078 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.213 1.213 13 N -0.188 5.188 14 C -0.042 4.042 15 C -0.170 4.170 16 C -0.176 4.176 17 C -0.139 4.139 18 C -0.193 4.193 19 C 0.045 3.955 20 N -0.389 5.389 21 C 0.007 3.993 22 C -0.041 4.041 23 H 0.057 0.943 24 C -0.192 4.192 25 H 0.047 0.953 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.249 0.751 36 H 0.077 0.923 37 H 0.128 0.872 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.804 4.394 10.895 12.077 hybrid contribution -0.513 0.850 0.145 1.004 sum -3.317 5.244 11.040 12.664 Atomic orbital electron populations 1.21605 0.96185 1.00502 1.00506 1.22060 0.94933 0.98175 1.01474 1.19474 0.92780 0.91235 0.86570 0.96615 1.22687 0.93116 1.45534 1.04303 0.93175 1.26776 1.09409 0.93580 0.91892 1.70889 1.10595 1.46884 1.28260 0.83169 0.71273 0.77068 0.76291 1.19352 1.20893 1.21293 1.58766 1.47628 1.05370 1.07075 1.18749 1.03035 0.89060 0.93383 1.20997 1.04235 0.96639 0.95090 1.20930 1.04387 0.92118 1.00186 1.21013 1.00773 0.99902 0.92235 1.20745 1.07003 0.92720 0.98810 1.17757 0.98937 0.92644 0.86112 1.44617 1.75439 1.07912 1.10942 1.21845 1.01084 0.79869 0.96528 1.21893 0.94765 0.97116 0.90330 0.94263 1.21960 1.02122 0.93548 1.01524 0.95311 0.92697 0.92387 0.95200 0.89975 0.93115 0.88296 0.85640 0.83579 0.83762 0.75107 0.92271 0.87206 0.92760 0.90202 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.80 71.98 0.71 -4.37 16 2 C -0.13 -5.82 4.66 30.59 0.14 -5.67 16 3 C 0.20 9.99 1.09 44.17 0.05 10.04 16 4 H 0.02 0.89 4.12 -2.39 -0.01 0.88 16 5 C -0.62 -33.16 6.96 25.60 0.18 -32.98 16 6 H 0.05 2.74 5.17 -2.91 -0.02 2.73 16 7 C -0.02 -0.91 5.18 84.66 0.44 -0.47 16 8 N -0.93 -55.42 12.89 21.45 0.28 -55.14 16 9 Si 1.10 50.16 29.92 68.60 2.05 52.22 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 N -0.47 -20.19 3.49 -651.33 -2.27 -22.47 16 14 C 0.06 2.56 5.80 38.32 0.22 2.78 16 15 C -0.15 -6.42 8.98 22.45 0.20 -6.22 16 16 C -0.16 -5.63 10.03 22.25 0.22 -5.41 16 17 C -0.12 -3.68 10.05 22.28 0.22 -3.45 16 18 C -0.17 -5.23 9.90 22.38 0.22 -5.01 16 19 C 0.15 5.35 6.48 38.09 0.25 5.60 16 20 N -0.75 -22.03 5.93 -336.23 -1.99 -24.02 16 21 C 0.13 3.75 6.57 86.38 0.57 4.32 16 22 C 0.07 2.50 1.99 45.13 0.09 2.59 16 23 H 0.04 1.74 5.48 -2.39 -0.01 1.73 16 24 C -0.13 -4.46 7.45 71.98 0.54 -3.93 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.06 2.21 7.51 -2.39 -0.02 2.19 16 28 H 0.03 1.52 6.59 -2.38 -0.02 1.51 16 29 H 0.08 3.51 3.65 -2.39 -0.01 3.50 16 30 H 0.26 15.68 6.35 -92.70 -0.59 15.09 16 31 H 0.10 4.72 5.70 -2.91 -0.02 4.71 16 32 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 33 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.41 9.25 8.89 -92.71 -0.82 8.43 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.05 2.13 5.60 -2.38 -0.01 2.12 16 39 H 0.08 2.05 8.02 -2.39 -0.02 2.03 16 40 H 0.06 2.06 7.16 -2.39 -0.02 2.04 16 Total: -1.00 -64.51 299.44 2.52 -61.99 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.41 Total: 29.60 kcal Atomic # 6 Polarization: -46.23 SS G_CDS: 4.05 Total: -42.18 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.99 Total: -101.63 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.22 kcal Total: -64.51 2.52 -61.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252685585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.082 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds