Wall clock time and date at job start Mon Mar 30 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46970 * 269.99892 * 3 2 1 5 5 H 1.48501 * 109.47107 * 29.99602 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99476 * 3 2 1 7 7 C 1.37883 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 174.88604 * 7 2 1 9 9 C 1.50700 * 119.99982 * 354.89342 * 7 2 1 10 10 H 1.09001 * 109.47306 * 354.64138 * 9 7 2 11 11 C 1.50705 * 109.47021 * 234.64731 * 9 7 2 12 12 C 1.38235 * 119.99429 * 301.99865 * 11 9 7 13 13 C 1.38236 * 119.99507 * 179.81116 * 12 11 9 14 14 C 1.38232 * 120.00454 * 0.41512 * 13 12 11 15 15 C 1.38239 * 119.99527 * 359.81583 * 14 13 12 16 16 C 1.38229 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.46894 * 109.47447 * 114.64744 * 9 7 2 18 18 C 1.48849 * 111.13457 * 40.74268 * 17 9 7 19 19 C 1.54377 * 104.63404 * 201.00788 * 18 17 9 20 20 C 1.54261 * 105.05816 * 23.85894 * 19 18 17 21 21 C 1.48563 * 110.99716 * 285.42790 * 17 9 7 22 22 H 1.08999 * 110.41254 * 40.26027 * 21 17 9 23 23 C 1.53002 * 110.41205 * 277.93782 * 21 17 9 24 24 N 1.46893 * 109.47272 * 56.64842 * 23 21 17 25 25 H 0.97000 * 119.99246 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00588 * 359.97438 * 12 11 9 27 27 H 1.08009 * 119.99893 * 180.20606 * 13 12 11 28 28 H 1.07995 * 120.00294 * 179.78889 * 14 13 12 29 29 H 1.07996 * 119.99844 * 179.97438 * 15 14 13 30 30 H 1.08004 * 120.00120 * 179.97438 * 16 15 14 31 31 H 1.09008 * 110.39115 * 82.22080 * 18 17 9 32 32 H 1.08996 * 110.50033 * 319.85828 * 18 17 9 33 33 H 1.09006 * 110.32666 * 264.96218 * 19 18 17 34 34 H 1.09001 * 110.40640 * 142.79806 * 19 18 17 35 35 H 1.09008 * 110.32129 * 241.10331 * 20 19 18 36 36 H 1.09000 * 110.32370 * 118.89949 * 20 19 18 37 37 H 1.09004 * 109.47228 * 176.64914 * 23 21 17 38 38 H 1.09003 * 109.46998 * 296.64498 * 23 21 17 39 39 H 1.00908 * 111.00269 * 56.04714 * 24 23 21 40 40 H 1.00906 * 111.00481 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1961 -0.0828 9 6 1.2555 -2.4966 0.1173 10 1 0.1980 -2.2936 0.2863 11 6 1.8057 -3.2905 1.2740 12 6 3.1447 -3.6326 1.3027 13 6 3.6503 -4.3575 2.3657 14 6 2.8150 -4.7477 3.3957 15 6 1.4750 -4.4098 3.3646 16 6 0.9704 -3.6812 2.3038 17 7 1.4142 -3.2658 -1.1241 18 6 2.8079 -3.1730 -1.6385 19 6 2.6958 -3.5323 -3.1356 20 6 1.2348 -3.2150 -3.5156 21 6 0.5871 -2.6908 -2.2160 22 1 0.6221 -1.6018 -2.1863 23 6 -0.8582 -3.1803 -2.1050 24 7 -1.3918 -2.8351 -0.7806 25 1 -0.4849 0.8401 -0.0004 26 1 3.7965 -3.3312 0.4960 27 1 4.6972 -4.6219 2.3897 28 1 3.2093 -5.3170 4.2244 29 1 0.8223 -4.7150 4.1691 30 1 -0.0767 -3.4175 2.2793 31 1 3.4511 -3.8866 -1.1234 32 1 3.1925 -2.1602 -1.5183 33 1 2.9051 -4.5912 -3.2876 34 1 3.3811 -2.9231 -3.7250 35 1 0.7269 -4.1182 -3.8541 36 1 1.2029 -2.4489 -4.2903 37 1 -1.4636 -2.7036 -2.8761 38 1 -0.8868 -4.2618 -2.2376 39 1 -1.3167 -1.8438 -0.6077 40 1 -2.3459 -3.1484 -0.6822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252691376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:48 Heat of formation + Delta-G solvation = 38.303861 kcal Electronic energy + Delta-G solvation = -20627.435944 eV Core-core repulsion = 17827.879436 eV Total energy + Delta-G solvation = -2799.556507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.89249 -37.54130 -33.52261 -33.31862 -31.43038 -30.00524 -29.00464 -28.00611 -25.90320 -23.85576 -22.46490 -21.64466 -20.29463 -19.60642 -19.08149 -16.49263 -15.76416 -15.28242 -14.86755 -14.61402 -14.22343 -14.07219 -13.73500 -13.50172 -12.95620 -12.62179 -12.47074 -12.10988 -11.98626 -11.70828 -11.29249 -11.10435 -10.88884 -10.82358 -10.56330 -10.44232 -10.31233 -10.12680 -9.89292 -9.59447 -9.50036 -8.96354 -8.66660 -7.99438 -7.72744 -7.50723 -6.95581 -6.13313 -4.21675 2.33524 2.39806 3.20649 3.28817 3.33733 4.31159 4.74371 5.14402 5.30069 5.38357 5.56254 5.69355 5.74912 5.78930 5.86264 5.90965 6.11269 6.21597 6.27543 6.33650 6.42477 6.45359 6.46940 6.59496 6.61980 6.74959 6.84859 6.93990 7.05630 7.10264 7.24388 7.34746 7.42242 7.58815 7.70624 7.87064 8.01618 8.10061 8.23744 8.39756 8.52455 8.68299 9.03333 9.45188 10.86971 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.010318 C = 0.008151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.927888 B = 2712.938665 C = 3434.254752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.189 3.811 10 H 0.131 0.869 11 C -0.008 4.008 12 C -0.119 4.119 13 C -0.133 4.133 14 C -0.155 4.155 15 C -0.130 4.130 16 C -0.118 4.118 17 N -0.488 5.488 18 C 0.020 3.980 19 C -0.122 4.122 20 C -0.119 4.119 21 C 0.072 3.928 22 H 0.068 0.932 23 C 0.088 3.912 24 N -0.842 5.842 25 H 0.263 0.737 26 H 0.116 0.884 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.006 0.994 38 H 0.058 0.942 39 H 0.371 0.629 40 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 -5.358 -1.896 5.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.083 3.917 10 H 0.149 0.851 11 C -0.009 4.009 12 C -0.137 4.137 13 C -0.151 4.151 14 C -0.173 4.173 15 C -0.148 4.148 16 C -0.137 4.137 17 N -0.211 5.211 18 C -0.108 4.108 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.038 4.038 22 H 0.086 0.914 23 C -0.043 4.043 24 N -0.377 5.377 25 H 0.073 0.927 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.192 0.808 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.920 -6.221 -1.470 6.458 hybrid contribution 0.177 2.402 -0.593 2.480 sum 1.097 -3.819 -2.063 4.477 Atomic orbital electron populations 1.69633 1.05885 1.26815 1.50310 1.24920 0.94827 0.99033 0.93880 0.86668 0.80262 0.83518 0.78046 1.20795 1.21078 1.19834 1.21632 0.93688 0.91477 1.49940 0.92636 1.19310 1.02154 0.86896 0.83305 0.85135 1.20484 0.92482 0.91637 0.96288 1.21203 0.96210 0.98537 0.97798 1.20989 0.98561 1.00306 0.95285 1.20785 0.94253 1.03224 0.99032 1.20966 0.95232 1.00147 0.98440 1.21075 0.99740 0.98507 0.94377 1.65750 1.02289 1.50219 1.02883 1.23281 0.94154 1.01060 0.92334 1.22256 0.96078 1.00034 0.97643 1.22287 0.96152 0.99853 0.97450 1.22370 0.92341 0.98834 0.90207 0.91394 1.21585 0.94424 0.99008 0.89301 1.58894 1.23398 1.25835 1.29569 0.92688 0.86622 0.87811 0.87857 0.87631 0.86643 0.92122 0.91592 0.92631 0.92898 0.92352 0.92831 0.97593 0.92368 0.80822 0.87418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.51 11.11 55.43 0.62 -21.89 16 2 C 0.08 1.94 5.18 -17.81 -0.09 1.85 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -13.37 5.70 -34.44 -0.20 -13.56 16 8 H 0.06 1.44 6.21 -52.49 -0.33 1.11 16 9 C 0.19 4.46 2.16 -70.02 -0.15 4.31 16 10 H 0.13 3.24 3.32 -51.93 -0.17 3.06 16 11 C -0.01 -0.18 4.98 -104.62 -0.52 -0.70 16 12 C -0.12 -2.51 8.30 -39.58 -0.33 -2.84 16 13 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 14 C -0.15 -2.75 10.05 -39.58 -0.40 -3.15 16 15 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 16 C -0.12 -2.52 9.67 -39.59 -0.38 -2.90 16 17 N -0.49 -10.56 4.95 -216.75 -1.07 -11.64 16 18 C 0.02 0.40 4.82 -2.02 -0.01 0.39 16 19 C -0.12 -2.09 7.00 -25.35 -0.18 -2.27 16 20 C -0.12 -2.06 6.55 -25.35 -0.17 -2.22 16 21 C 0.07 1.47 2.55 -66.07 -0.17 1.30 16 22 H 0.07 1.62 7.13 -51.93 -0.37 1.25 16 23 C 0.09 1.67 6.46 -3.83 -0.02 1.64 16 24 N -0.84 -16.52 7.34 -10.37 -0.08 -16.59 16 25 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 26 H 0.12 2.40 5.25 -52.49 -0.28 2.13 16 27 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.12 2.44 7.95 -52.48 -0.42 2.02 16 31 H 0.06 1.19 6.11 -51.92 -0.32 0.87 16 32 H 0.07 1.46 5.34 -51.93 -0.28 1.18 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.93 7.77 -51.92 -0.40 0.53 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.01 0.11 8.14 -51.93 -0.42 -0.32 16 38 H 0.06 1.06 8.01 -51.93 -0.42 0.65 16 39 H 0.37 8.04 6.41 -39.29 -0.25 7.79 16 40 H 0.32 5.29 9.08 -39.29 -0.36 4.94 16 LS Contribution 305.41 15.07 4.60 4.60 Total: -1.00 -25.95 305.41 -10.04 -35.99 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -5.68 Total: 18.07 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -3.41 Total: -23.84 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.53 Total: -50.12 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.95 -10.04 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252691376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.294 kcal (2) G-P(sol) polarization free energy of solvation -25.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds