Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00232 * 2 1 4 4 H 1.48501 * 109.46970 * 269.99892 * 3 2 1 5 5 H 1.48501 * 109.47107 * 29.99602 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99476 * 3 2 1 7 7 C 1.37883 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 174.88604 * 7 2 1 9 9 C 1.50700 * 119.99982 * 354.89342 * 7 2 1 10 10 H 1.09001 * 109.47306 * 354.64138 * 9 7 2 11 11 C 1.50705 * 109.47021 * 234.64731 * 9 7 2 12 12 C 1.38235 * 119.99429 * 301.99865 * 11 9 7 13 13 C 1.38236 * 119.99507 * 179.81116 * 12 11 9 14 14 C 1.38232 * 120.00454 * 0.41512 * 13 12 11 15 15 C 1.38239 * 119.99527 * 359.81583 * 14 13 12 16 16 C 1.38229 * 120.00125 * 359.97438 * 15 14 13 17 17 N 1.46894 * 109.47447 * 114.64744 * 9 7 2 18 18 C 1.48849 * 111.13457 * 40.74268 * 17 9 7 19 19 C 1.54377 * 104.63404 * 201.00788 * 18 17 9 20 20 C 1.54261 * 105.05816 * 23.85894 * 19 18 17 21 21 C 1.48563 * 110.99716 * 285.42790 * 17 9 7 22 22 H 1.08999 * 110.41254 * 40.26027 * 21 17 9 23 23 C 1.53002 * 110.41205 * 277.93782 * 21 17 9 24 24 N 1.46893 * 109.47272 * 56.64842 * 23 21 17 25 25 H 0.97000 * 119.99246 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00588 * 359.97438 * 12 11 9 27 27 H 1.08009 * 119.99893 * 180.20606 * 13 12 11 28 28 H 1.07995 * 120.00294 * 179.78889 * 14 13 12 29 29 H 1.07996 * 119.99844 * 179.97438 * 15 14 13 30 30 H 1.08004 * 120.00120 * 179.97438 * 16 15 14 31 31 H 1.09008 * 110.39115 * 82.22080 * 18 17 9 32 32 H 1.08996 * 110.50033 * 319.85828 * 18 17 9 33 33 H 1.09006 * 110.32666 * 264.96218 * 19 18 17 34 34 H 1.09001 * 110.40640 * 142.79806 * 19 18 17 35 35 H 1.09008 * 110.32129 * 241.10331 * 20 19 18 36 36 H 1.09000 * 110.32370 * 118.89949 * 20 19 18 37 37 H 1.09004 * 109.47228 * 176.64914 * 23 21 17 38 38 H 1.09003 * 109.46998 * 296.64498 * 23 21 17 39 39 H 1.00908 * 111.00269 * 56.04714 * 24 23 21 40 40 H 1.00906 * 111.00481 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0814 -1.1961 -0.0828 9 6 1.2555 -2.4966 0.1173 10 1 0.1980 -2.2936 0.2863 11 6 1.8057 -3.2905 1.2740 12 6 3.1447 -3.6326 1.3027 13 6 3.6503 -4.3575 2.3657 14 6 2.8150 -4.7477 3.3957 15 6 1.4750 -4.4098 3.3646 16 6 0.9704 -3.6812 2.3038 17 7 1.4142 -3.2658 -1.1241 18 6 2.8079 -3.1730 -1.6385 19 6 2.6958 -3.5323 -3.1356 20 6 1.2348 -3.2150 -3.5156 21 6 0.5871 -2.6908 -2.2160 22 1 0.6221 -1.6018 -2.1863 23 6 -0.8582 -3.1803 -2.1050 24 7 -1.3918 -2.8351 -0.7806 25 1 -0.4849 0.8401 -0.0004 26 1 3.7965 -3.3312 0.4960 27 1 4.6972 -4.6219 2.3897 28 1 3.2093 -5.3170 4.2244 29 1 0.8223 -4.7150 4.1691 30 1 -0.0767 -3.4175 2.2793 31 1 3.4511 -3.8866 -1.1234 32 1 3.1925 -2.1602 -1.5183 33 1 2.9051 -4.5912 -3.2876 34 1 3.3811 -2.9231 -3.7250 35 1 0.7269 -4.1182 -3.8541 36 1 1.2029 -2.4489 -4.2903 37 1 -1.4636 -2.7036 -2.8761 38 1 -0.8868 -4.2618 -2.2376 39 1 -1.3167 -1.8438 -0.6077 40 1 -2.3459 -3.1484 -0.6822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252691376.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = 22.649754 kcal Electronic energy + Delta-G solvation = -20628.114757 eV Core-core repulsion = 17827.879436 eV Total energy + Delta-G solvation = -2800.235320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.48628 -39.06423 -35.26069 -34.86566 -33.16594 -31.52643 -30.53356 -29.55479 -27.71781 -25.50508 -24.04272 -23.16979 -21.80991 -21.18358 -20.71335 -18.31182 -17.31741 -16.95636 -16.40910 -16.31523 -15.79696 -15.59864 -15.28044 -15.15523 -14.49809 -14.26028 -13.96368 -13.76436 -13.57253 -13.32987 -12.91698 -12.86375 -12.56310 -12.44504 -12.16994 -12.01848 -11.89697 -11.66904 -11.48021 -11.21428 -11.04544 -10.72242 -10.58952 -9.52325 -9.29541 -9.06167 -8.71622 -8.01733 -6.16764 0.79452 0.86982 1.35200 1.39589 1.46791 2.41082 3.08586 3.32229 3.74990 3.89071 4.10517 4.27043 4.34748 4.37023 4.37981 4.48414 4.59965 4.66633 4.75703 4.88131 4.92842 4.99368 5.00305 5.09679 5.14522 5.26368 5.29557 5.40605 5.50320 5.52101 5.64955 5.71613 5.81676 5.84911 5.99070 6.17661 6.34298 6.49873 6.60272 6.69905 6.86766 6.97860 7.19118 7.50500 8.93533 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.010318 C = 0.008151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.927888 B = 2712.938665 C = 3434.254752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.038 3.962 3 Si 0.934 3.066 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.040 0.960 9 C 0.191 3.809 10 H 0.117 0.883 11 C -0.039 4.039 12 C -0.137 4.137 13 C -0.133 4.133 14 C -0.148 4.148 15 C -0.127 4.127 16 C -0.141 4.141 17 N -0.490 5.490 18 C 0.020 3.980 19 C -0.116 4.116 20 C -0.114 4.114 21 C 0.067 3.933 22 H 0.028 0.972 23 C 0.092 3.908 24 N -0.852 5.852 25 H 0.262 0.738 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.019 0.981 38 H 0.067 0.933 39 H 0.360 0.640 40 H 0.329 0.671 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -6.866 -1.646 7.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.163 4.163 3 Si 0.762 3.238 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.058 0.942 9 C 0.085 3.915 10 H 0.135 0.865 11 C -0.040 4.040 12 C -0.155 4.155 13 C -0.150 4.150 14 C -0.166 4.166 15 C -0.145 4.145 16 C -0.160 4.160 17 N -0.213 5.213 18 C -0.108 4.108 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.042 4.042 22 H 0.046 0.954 23 C -0.040 4.040 24 N -0.387 5.387 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.152 0.848 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.085 0.915 39 H 0.179 0.821 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.592 -7.743 -1.229 8.000 hybrid contribution -0.013 2.808 -0.615 2.875 sum 1.579 -4.935 -1.844 5.499 Atomic orbital electron populations 1.69724 1.06268 1.26954 1.50848 1.25426 0.95581 1.01013 0.94282 0.85938 0.78971 0.81139 0.77764 1.20682 1.20882 1.20527 1.21741 0.92979 0.92796 1.49731 0.94197 1.19170 1.01105 0.86657 0.84603 0.86536 1.20559 0.93629 0.93186 0.96670 1.21243 0.95604 0.99784 0.98910 1.21353 1.00285 0.98980 0.94430 1.21240 0.93633 1.02222 0.99517 1.21309 0.96338 0.98752 0.98092 1.21143 0.99320 1.00038 0.95454 1.65728 1.03217 1.49590 1.02766 1.23241 0.93370 0.99563 0.94651 1.22245 0.96355 1.01451 0.95325 1.22282 0.96023 1.00897 0.96009 1.22408 0.93620 0.96586 0.91610 0.95412 1.21577 0.93625 0.99456 0.89304 1.58844 1.24615 1.24969 1.30318 0.92839 0.87386 0.84830 0.83934 0.84607 0.87753 0.91997 0.94299 0.90764 0.91481 0.90389 0.91748 0.96257 0.91459 0.82137 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.94 11.11 21.45 0.24 -46.70 16 2 C 0.04 1.99 5.18 84.66 0.44 2.43 16 3 Si 0.93 42.74 29.54 68.60 2.03 44.76 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -27.94 5.70 25.60 0.15 -27.79 16 8 H 0.04 2.16 6.21 -2.91 -0.02 2.14 16 9 C 0.19 9.27 2.16 43.43 0.09 9.37 16 10 H 0.12 5.98 3.32 -2.39 -0.01 5.97 16 11 C -0.04 -1.82 4.98 -19.86 -0.10 -1.92 16 12 C -0.14 -5.76 8.30 22.27 0.18 -5.57 16 13 C -0.13 -4.64 10.05 22.27 0.22 -4.41 16 14 C -0.15 -4.77 10.05 22.27 0.22 -4.55 16 15 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 16 C -0.14 -6.00 9.67 22.27 0.22 -5.79 16 17 N -0.49 -21.47 4.95 -839.66 -4.16 -25.63 16 18 C 0.02 0.81 4.82 86.39 0.42 1.23 16 19 C -0.12 -3.78 7.00 31.49 0.22 -3.56 16 20 C -0.11 -3.76 6.55 31.49 0.21 -3.55 16 21 C 0.07 2.77 2.55 45.06 0.11 2.88 16 22 H 0.03 1.37 7.13 -2.39 -0.02 1.35 16 23 C 0.09 3.42 6.46 86.31 0.56 3.97 16 24 N -0.85 -33.89 7.34 -186.72 -1.37 -35.26 16 25 H 0.26 13.20 8.31 -92.71 -0.77 12.43 16 26 H 0.11 4.58 5.25 -2.91 -0.02 4.56 16 27 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 29 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 30 H 0.10 4.54 7.95 -2.91 -0.02 4.52 16 31 H 0.06 2.45 6.11 -2.38 -0.01 2.43 16 32 H 0.04 1.78 5.34 -2.39 -0.01 1.77 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.28 7.77 -2.38 -0.02 2.26 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 39 H 0.36 16.06 6.41 -89.69 -0.57 15.48 16 40 H 0.33 11.08 9.08 -89.69 -0.81 10.27 16 Total: -1.00 -56.83 305.41 -0.43 -57.27 By element: Atomic # 1 Polarization: 47.38 SS G_CDS: -0.33 Total: 47.04 kcal Atomic # 6 Polarization: -44.65 SS G_CDS: 3.17 Total: -41.48 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -5.29 Total: -107.59 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -56.83 -0.43 -57.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252691376.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.916 kcal (2) G-P(sol) polarization free energy of solvation -56.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds