Wall clock time and date at job start Mon Mar 30 2020 07:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 120.78838 * 2 1 4 4 C 1.38182 * 119.15849 * 179.79862 * 3 2 1 5 5 N 1.31883 * 120.76586 * 0.49015 * 4 3 2 6 6 C 1.31853 * 121.72885 * 359.73741 * 5 4 3 7 7 C 1.38229 * 120.75863 * 0.02646 * 6 5 4 8 8 C 1.50708 * 120.41433 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46639 * 260.02089 * 8 7 6 10 10 C 1.46898 * 110.99687 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.43881 * 327.54287 * 10 9 8 12 12 C 1.54268 * 110.48598 * 90.22458 * 10 9 8 13 13 C 1.53872 * 106.60027 * 142.28921 * 12 10 9 14 14 C 1.54275 * 106.59577 * 0.02562 * 13 12 10 15 15 H 1.09004 * 110.48241 * 95.07308 * 14 13 12 16 16 C 1.50699 * 110.48513 * 217.71100 * 14 13 12 17 17 H 1.08000 * 120.00270 * 114.77203 * 16 14 13 18 18 C 1.37882 * 120.00369 * 294.77912 * 16 14 13 19 19 N 1.31518 * 119.99783 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00257 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47393 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47273 * 119.99711 * 20 18 16 23 23 H 1.48505 * 109.47015 * 239.99723 * 20 18 16 24 24 C 1.54885 * 104.19801 * 336.39050 * 14 13 12 25 25 H 1.09002 * 109.47152 * 269.71818 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71919 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71900 * 1 2 3 28 28 H 1.07994 * 120.41833 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.61535 * 180.25188 * 4 3 2 30 30 H 1.08001 * 119.61864 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47111 * 20.01857 * 8 7 6 32 32 H 1.08998 * 109.46885 * 140.02488 * 8 7 6 33 33 H 1.00894 * 110.99785 * 303.95378 * 9 8 7 34 34 H 1.09000 * 110.03203 * 261.56994 * 12 10 9 35 35 H 1.08991 * 110.03168 * 23.00546 * 12 10 9 36 36 H 1.09004 * 110.03289 * 240.71910 * 13 12 10 37 37 H 1.09002 * 110.07526 * 119.30440 * 13 12 10 38 38 H 0.97001 * 119.99776 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.75601 * 279.63256 * 24 14 13 40 40 H 1.08989 * 110.75814 * 156.25442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0042 5 7 4.2403 0.0001 -0.0014 6 6 3.5983 -1.1516 -0.0062 7 6 2.2166 -1.1908 -0.0059 8 6 1.4908 -2.5116 -0.0119 9 7 1.0442 -2.8186 -1.3773 10 6 0.3305 -4.1018 -1.4217 11 1 0.7385 -4.7900 -0.6815 12 6 -1.1796 -3.8880 -1.1897 13 6 -1.9108 -4.8764 -2.1149 14 6 -0.8194 -5.6569 -2.8764 15 1 -0.5997 -6.5972 -2.3706 16 6 -1.2472 -5.9093 -4.2992 17 1 -0.7050 -5.4544 -5.1149 18 6 -2.3310 -6.7210 -4.5596 19 7 -2.9911 -7.2753 -3.5663 20 14 -2.8607 -7.0344 -6.3232 21 1 -1.9600 -6.3010 -7.2485 22 1 -2.7880 -8.4895 -6.6108 23 1 -4.2557 -6.5615 -6.5125 24 6 0.4135 -4.7202 -2.8391 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6967 2.1377 0.0004 29 1 4.1583 2.0754 0.0084 30 1 4.1586 -2.0750 -0.0103 31 1 2.1621 -3.2967 0.3359 32 1 0.6259 -2.4538 0.6489 33 1 0.4721 -2.0740 -1.7466 34 1 -1.4305 -4.0950 -0.1494 35 1 -1.4552 -2.8647 -1.4442 36 1 -2.5413 -4.3327 -2.8185 37 1 -2.5170 -5.5632 -1.5242 38 1 -3.7533 -7.8466 -3.7496 39 1 0.3341 -3.9465 -3.6028 40 1 1.3350 -5.2896 -2.9589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295051714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:22 Heat of formation + Delta-G solvation = 13.364419 kcal Electronic energy + Delta-G solvation = -19035.437493 eV Core-core repulsion = 16234.799530 eV Total energy + Delta-G solvation = -2800.637963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45019 -37.92267 -35.24001 -33.54017 -32.34088 -30.95217 -28.30467 -27.98945 -26.96826 -24.82528 -23.35460 -22.72170 -21.38423 -19.67134 -19.03677 -16.80841 -16.53560 -16.30373 -15.71143 -15.17301 -14.62923 -14.38011 -14.10659 -13.81508 -13.40140 -13.11642 -12.99007 -12.79420 -12.56404 -12.36116 -12.19115 -11.65503 -11.38377 -11.08412 -10.98051 -10.67382 -10.48293 -10.16487 -9.87029 -9.58269 -9.54542 -9.52256 -9.16695 -9.03222 -8.71165 -8.36300 -8.01750 -5.98812 -4.00733 1.01809 1.14385 3.30864 3.39120 3.43534 3.66202 4.32827 4.45424 4.53602 4.55815 4.67037 4.85018 4.88762 5.22772 5.28908 5.32797 5.34832 5.44040 5.53600 5.61430 5.65575 5.72317 5.81680 5.90467 5.97962 6.19119 6.24486 6.44850 6.62068 6.64298 6.72866 6.84066 7.03464 7.12519 7.34487 7.46965 7.63917 7.72233 7.89663 7.92483 8.05073 8.50357 9.03126 9.63280 11.11129 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.003709 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.869559 B = 7547.287287 C = 7648.741146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.037 4.037 3 C -0.176 4.176 4 C 0.094 3.906 5 N -0.491 5.491 6 C 0.118 3.882 7 C -0.127 4.127 8 C 0.099 3.901 9 N -0.677 5.677 10 C 0.079 3.921 11 H 0.073 0.927 12 C -0.152 4.152 13 C -0.095 4.095 14 C 0.047 3.953 15 H 0.030 0.970 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.099 4.099 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.081 0.919 32 H 0.040 0.960 33 H 0.337 0.663 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.258 0.742 39 H 0.058 0.942 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.316 14.499 9.534 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.063 4.063 5 N -0.200 5.200 6 C -0.039 4.039 7 C -0.129 4.129 8 C -0.030 4.030 9 N -0.308 5.308 10 C -0.030 4.030 11 H 0.092 0.908 12 C -0.191 4.191 13 C -0.133 4.133 14 C 0.028 3.972 15 H 0.048 0.952 16 C -0.548 4.548 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.530 5.530 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.137 4.137 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.173 0.827 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.157 0.843 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.684 14.106 9.380 19.036 hybrid contribution -2.256 0.101 -0.486 2.310 sum 6.428 14.207 8.894 17.952 Atomic orbital electron populations 1.20915 0.90412 1.03634 1.02924 1.20242 0.96676 0.92639 0.95028 1.21993 0.95651 0.98456 1.03477 1.22695 0.91740 0.96261 0.95617 1.67692 1.41243 0.98514 1.12541 1.22683 0.91063 0.96143 0.94057 1.20804 0.95300 0.95416 1.01419 1.20821 0.97903 0.92837 0.91474 1.60801 1.45921 1.05227 1.18843 1.22617 0.91272 0.89286 0.99817 0.90844 1.22945 0.96800 0.99781 0.99579 1.22041 0.98830 0.95999 0.96471 1.19464 0.89201 0.93035 0.95537 0.95222 1.21213 1.12961 1.28625 0.92023 0.92582 1.24995 0.96612 0.95722 0.96757 1.69983 1.20224 1.32301 1.30493 0.86604 0.78400 0.77928 0.85477 1.19770 1.21100 1.21166 1.22533 0.99374 0.98547 0.93271 0.90494 0.90827 0.90823 0.85043 0.83055 0.82702 0.90026 0.94180 0.84298 0.93734 0.93501 0.93128 0.92906 0.93236 0.92326 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.35 36.01 0.34 -0.78 16 2 C -0.04 -0.40 5.92 -104.32 -0.62 -1.02 16 3 C -0.18 -1.71 9.82 -39.44 -0.39 -2.10 16 4 C 0.09 0.98 11.18 -17.55 -0.20 0.78 16 5 N -0.49 -6.24 10.36 -13.25 -0.14 -6.37 16 6 C 0.12 1.44 10.83 -17.55 -0.19 1.25 16 7 C -0.13 -1.51 5.41 -104.48 -0.57 -2.07 16 8 C 0.10 1.21 4.94 -4.97 -0.02 1.19 16 9 N -0.68 -9.87 6.34 -106.25 -0.67 -10.55 16 10 C 0.08 1.35 3.19 -66.07 -0.21 1.14 16 11 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 12 C -0.15 -2.69 6.50 -25.61 -0.17 -2.85 16 13 C -0.09 -2.15 5.60 -25.61 -0.14 -2.29 16 14 C 0.05 1.14 2.72 -90.11 -0.25 0.89 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 16 C -0.51 -13.96 8.36 -34.44 -0.29 -14.25 16 17 H 0.06 1.53 7.77 -52.49 -0.41 1.12 16 18 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 19 N -0.89 -25.61 12.63 55.43 0.70 -24.91 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 C -0.10 -2.03 5.96 -24.75 -0.15 -2.18 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.75 5.45 -51.93 -0.28 0.47 16 27 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 29 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.16 1.67 8.04 -52.49 -0.42 1.25 16 31 H 0.08 0.96 7.95 -51.93 -0.41 0.54 16 32 H 0.04 0.47 7.38 -51.93 -0.38 0.09 16 33 H 0.34 4.84 6.40 -39.30 -0.25 4.59 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.76 7.52 -51.93 -0.39 0.37 16 36 H 0.05 1.23 7.83 -51.93 -0.41 0.82 16 37 H 0.05 1.28 8.06 -51.93 -0.42 0.87 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.06 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.05 1.00 8.14 -51.94 -0.42 0.57 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -29.44 322.66 -9.50 -38.94 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.29 Total: 2.43 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.94 Total: -20.71 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.11 Total: -41.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.44 -9.50 -38.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295051714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.309 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds