Wall clock time and date at job start Mon Mar 30 2020 07:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38675 * 120.78838 * 2 1 4 4 C 1.38182 * 119.15849 * 179.79862 * 3 2 1 5 5 N 1.31883 * 120.76586 * 0.49015 * 4 3 2 6 6 C 1.31853 * 121.72885 * 359.73741 * 5 4 3 7 7 C 1.38229 * 120.75863 * 0.02646 * 6 5 4 8 8 C 1.50708 * 120.41433 * 179.97438 * 7 6 5 9 9 N 1.46905 * 109.46639 * 260.02089 * 8 7 6 10 10 C 1.46898 * 110.99687 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.43881 * 327.54287 * 10 9 8 12 12 C 1.54268 * 110.48598 * 90.22458 * 10 9 8 13 13 C 1.53872 * 106.60027 * 142.28921 * 12 10 9 14 14 C 1.54275 * 106.59577 * 0.02562 * 13 12 10 15 15 H 1.09004 * 110.48241 * 95.07308 * 14 13 12 16 16 C 1.50699 * 110.48513 * 217.71100 * 14 13 12 17 17 H 1.08000 * 120.00270 * 114.77203 * 16 14 13 18 18 C 1.37882 * 120.00369 * 294.77912 * 16 14 13 19 19 N 1.31518 * 119.99783 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 120.00257 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47393 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47273 * 119.99711 * 20 18 16 23 23 H 1.48505 * 109.47015 * 239.99723 * 20 18 16 24 24 C 1.54885 * 104.19801 * 336.39050 * 14 13 12 25 25 H 1.09002 * 109.47152 * 269.71818 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.71919 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.71900 * 1 2 3 28 28 H 1.07994 * 120.41833 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.61535 * 180.25188 * 4 3 2 30 30 H 1.08001 * 119.61864 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47111 * 20.01857 * 8 7 6 32 32 H 1.08998 * 109.46885 * 140.02488 * 8 7 6 33 33 H 1.00894 * 110.99785 * 303.95378 * 9 8 7 34 34 H 1.09000 * 110.03203 * 261.56994 * 12 10 9 35 35 H 1.08991 * 110.03168 * 23.00546 * 12 10 9 36 36 H 1.09004 * 110.03289 * 240.71910 * 13 12 10 37 37 H 1.09002 * 110.07526 * 119.30440 * 13 12 10 38 38 H 0.97001 * 119.99776 * 180.02562 * 19 18 16 39 39 H 1.09005 * 110.75601 * 279.63256 * 24 14 13 40 40 H 1.08989 * 110.75814 * 156.25442 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1520 0.0042 5 7 4.2403 0.0001 -0.0014 6 6 3.5983 -1.1516 -0.0062 7 6 2.2166 -1.1908 -0.0059 8 6 1.4908 -2.5116 -0.0119 9 7 1.0442 -2.8186 -1.3773 10 6 0.3305 -4.1018 -1.4217 11 1 0.7385 -4.7900 -0.6815 12 6 -1.1796 -3.8880 -1.1897 13 6 -1.9108 -4.8764 -2.1149 14 6 -0.8194 -5.6569 -2.8764 15 1 -0.5997 -6.5972 -2.3706 16 6 -1.2472 -5.9093 -4.2992 17 1 -0.7050 -5.4544 -5.1149 18 6 -2.3310 -6.7210 -4.5596 19 7 -2.9911 -7.2753 -3.5663 20 14 -2.8607 -7.0344 -6.3232 21 1 -1.9600 -6.3010 -7.2485 22 1 -2.7880 -8.4895 -6.6108 23 1 -4.2557 -6.5615 -6.5125 24 6 0.4135 -4.7202 -2.8391 25 1 -0.3633 -0.0051 1.0277 26 1 -0.3633 -0.8875 -0.5182 27 1 -0.3633 0.8925 -0.5095 28 1 1.6967 2.1377 0.0004 29 1 4.1583 2.0754 0.0084 30 1 4.1586 -2.0750 -0.0103 31 1 2.1621 -3.2967 0.3359 32 1 0.6259 -2.4538 0.6489 33 1 0.4721 -2.0740 -1.7466 34 1 -1.4305 -4.0950 -0.1494 35 1 -1.4552 -2.8647 -1.4442 36 1 -2.5413 -4.3327 -2.8185 37 1 -2.5170 -5.5632 -1.5242 38 1 -3.7533 -7.8466 -3.7496 39 1 0.3341 -3.9465 -3.6028 40 1 1.3350 -5.2896 -2.9589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295051714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:21 Heat of formation + Delta-G solvation = -3.928503 kcal Electronic energy + Delta-G solvation = -19036.187370 eV Core-core repulsion = 16234.799530 eV Total energy + Delta-G solvation = -2801.387840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27856 -39.40660 -36.48255 -34.76019 -33.89185 -32.12465 -29.83065 -29.05506 -28.36498 -26.23997 -24.97628 -23.54349 -22.25340 -21.12355 -20.91389 -18.36965 -17.62140 -17.32445 -16.87856 -16.61550 -16.24151 -15.62354 -15.32840 -14.92825 -14.45510 -14.35668 -14.07709 -13.81129 -13.68488 -13.54704 -13.36681 -13.21082 -13.01133 -12.75509 -12.37336 -12.34741 -12.13367 -11.77001 -11.57718 -11.34565 -10.98860 -10.73644 -10.47421 -10.36485 -10.32736 -9.94509 -9.21645 -8.11466 -6.20273 0.20186 0.34186 1.39479 1.41641 1.53092 2.44018 2.81331 3.19392 3.38476 3.62095 3.81139 3.84596 3.96466 3.98967 4.10147 4.13195 4.28691 4.51866 4.56096 4.66385 4.71528 4.72754 4.79460 4.87228 4.93356 5.04105 5.05642 5.09075 5.19356 5.23075 5.26005 5.44503 5.44942 5.46512 5.67327 5.84127 5.94062 6.00212 6.18295 6.41498 6.50087 6.91680 7.08076 7.47056 8.97814 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039213 B = 0.003709 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.869559 B = 7547.287287 C = 7648.741146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 C -0.173 4.173 4 C 0.086 3.914 5 N -0.518 5.518 6 C 0.102 3.898 7 C -0.139 4.139 8 C 0.104 3.896 9 N -0.678 5.678 10 C 0.096 3.904 11 H 0.080 0.920 12 C -0.139 4.139 13 C -0.086 4.086 14 C 0.036 3.964 15 H -0.001 1.001 16 C -0.529 4.529 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.921 5.921 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.280 1.280 24 C -0.091 4.091 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.341 0.659 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.259 0.741 39 H 0.051 0.949 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 16.478 9.868 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.052 4.052 3 C -0.193 4.193 4 C -0.070 4.070 5 N -0.228 5.228 6 C -0.054 4.054 7 C -0.141 4.141 8 C -0.025 4.025 9 N -0.309 5.309 10 C -0.014 4.014 11 H 0.099 0.901 12 C -0.178 4.178 13 C -0.125 4.125 14 C 0.017 3.983 15 H 0.017 0.983 16 C -0.567 4.567 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.560 5.560 20 Si 0.777 3.223 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.130 4.130 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.178 0.822 29 H 0.195 0.805 30 H 0.176 0.824 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.846 16.097 9.718 20.780 hybrid contribution -2.270 -0.472 -0.581 2.390 sum 6.577 15.625 9.137 19.258 Atomic orbital electron populations 1.20944 0.89187 1.03847 1.03718 1.20537 0.97662 0.92636 0.94392 1.22317 0.95448 0.99361 1.02168 1.23213 0.92606 0.96533 0.94692 1.67700 1.42139 0.99273 1.13642 1.22833 0.91528 0.96476 0.94606 1.20769 0.95176 0.95618 1.02586 1.20801 0.98283 0.93391 0.89997 1.60669 1.45278 1.04187 1.20787 1.22306 0.91091 0.90627 0.97369 0.90148 1.22822 0.96485 0.99203 0.99267 1.21815 0.98045 0.96224 0.96414 1.19457 0.91771 0.92872 0.94163 0.98324 1.21583 1.13082 1.28680 0.93376 0.93102 1.25760 0.96737 0.95620 1.00687 1.70101 1.20639 1.32893 1.32403 0.85606 0.78062 0.77814 0.80798 1.19171 1.20703 1.20624 1.22359 0.97301 0.97639 0.95670 0.89335 0.91897 0.89299 0.82160 0.80537 0.82350 0.89672 0.93205 0.83908 0.91851 0.91565 0.95378 0.95450 0.93194 0.93007 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.35 71.24 0.67 -1.16 16 2 C -0.04 -0.83 5.92 -19.67 -0.12 -0.94 16 3 C -0.17 -2.86 9.82 22.36 0.22 -2.64 16 4 C 0.09 1.61 11.18 84.67 0.95 2.55 16 5 N -0.52 -12.50 10.36 -195.84 -2.03 -14.53 16 6 C 0.10 2.40 10.83 84.69 0.92 3.32 16 7 C -0.14 -3.05 5.41 -19.77 -0.11 -3.16 16 8 C 0.10 2.33 4.94 85.56 0.42 2.75 16 9 N -0.68 -18.48 6.34 -490.05 -3.11 -21.59 16 10 C 0.10 3.13 3.19 45.98 0.15 3.28 16 11 H 0.08 2.55 7.82 -2.39 -0.02 2.53 16 12 C -0.14 -4.69 6.50 31.32 0.20 -4.49 16 13 C -0.09 -3.97 5.60 31.32 0.18 -3.80 16 14 C 0.04 1.83 2.72 -10.46 -0.03 1.80 16 15 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 16 C -0.53 -29.60 8.36 25.60 0.21 -29.39 16 17 H 0.05 2.82 7.77 -2.91 -0.02 2.80 16 18 C 0.01 0.58 5.35 84.66 0.45 1.04 16 19 N -0.92 -54.13 12.63 21.45 0.27 -53.86 16 20 Si 0.95 44.20 29.54 68.60 2.03 46.23 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C -0.09 -3.75 5.96 31.88 0.19 -3.56 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.10 5.45 -2.39 -0.01 1.09 16 27 H 0.09 1.07 8.10 -2.38 -0.02 1.05 16 28 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 29 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.16 3.35 8.04 -2.91 -0.02 3.33 16 31 H 0.08 1.84 7.95 -2.39 -0.02 1.82 16 32 H 0.05 1.03 7.38 -2.39 -0.02 1.02 16 33 H 0.34 9.02 6.40 -89.70 -0.57 8.44 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 2.00 7.52 -2.39 -0.02 1.98 16 36 H 0.03 1.37 7.83 -2.38 -0.02 1.36 16 37 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 38 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 39 H 0.05 2.18 8.05 -2.38 -0.02 2.16 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -64.30 322.66 1.91 -62.39 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.44 Total: 15.76 kcal Atomic # 6 Polarization: -38.71 SS G_CDS: 4.30 Total: -34.41 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -4.86 Total: -89.97 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -64.30 1.91 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295051714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.465 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds