Wall clock time and date at job start Mon Mar 30 2020 07:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38224 * 120.41932 * 2 1 4 4 N 1.31854 * 120.76703 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72360 * 359.97438 * 4 3 2 6 6 C 1.38185 * 120.76503 * 359.74161 * 5 4 3 7 7 C 1.38628 * 120.42229 * 180.02562 * 2 1 3 8 8 C 1.50703 * 120.78578 * 359.94939 * 7 2 1 9 9 N 1.46900 * 109.47335 * 80.00356 * 8 7 2 10 10 C 1.46900 * 111.00339 * 179.97438 * 9 8 7 11 11 H 1.09003 * 110.53346 * 327.61386 * 10 9 8 12 12 C 1.54463 * 110.65967 * 90.23953 * 10 9 8 13 13 C 1.53877 * 106.68421 * 142.05489 * 12 10 9 14 14 C 1.54265 * 106.59605 * 0.15594 * 13 12 10 15 15 H 1.09006 * 110.48556 * 95.06998 * 14 13 12 16 16 C 1.50701 * 110.48496 * 217.70899 * 14 13 12 17 17 H 1.08007 * 119.99597 * 114.77641 * 16 14 13 18 18 C 1.37869 * 120.00267 * 294.77624 * 16 14 13 19 19 N 1.31511 * 120.00107 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 120.00208 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46627 * 60.00028 * 20 18 16 22 22 H 1.48498 * 109.47465 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47046 * 300.00861 * 20 18 16 24 24 C 1.54887 * 104.20056 * 336.39127 * 14 13 12 25 25 H 1.08991 * 109.46915 * 269.97158 * 1 2 3 26 26 H 1.08998 * 109.47605 * 29.97644 * 1 2 3 27 27 H 1.09003 * 109.47164 * 149.97699 * 1 2 3 28 28 H 1.08007 * 119.62066 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.61997 * 180.02562 * 5 4 3 30 30 H 1.08000 * 120.41871 * 180.26023 * 6 5 4 31 31 H 1.09002 * 109.47507 * 320.00370 * 8 7 2 32 32 H 1.09001 * 109.47267 * 200.00353 * 8 7 2 33 33 H 1.00898 * 111.00244 * 303.95653 * 9 8 7 34 34 H 1.08999 * 109.85715 * 22.81285 * 12 10 9 35 35 H 1.09003 * 110.15968 * 261.45915 * 12 10 9 36 36 H 1.08995 * 110.02951 * 240.87549 * 13 12 10 37 37 H 1.08993 * 110.03177 * 119.44086 * 13 12 10 38 38 H 0.97007 * 120.00152 * 180.02562 * 19 18 16 39 39 H 1.09002 * 110.75856 * 156.25785 * 24 14 13 40 40 H 1.09006 * 110.75640 * 279.44771 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1471 0.0053 7 6 2.2090 -1.1954 -0.0005 8 6 1.4832 -2.5161 0.0000 9 7 1.0356 -2.8295 -1.3636 10 6 0.3228 -4.1135 -1.4018 11 1 0.7300 -4.7990 -0.6586 12 6 -1.1899 -3.9042 -1.1698 13 6 -1.9197 -4.8942 -2.0944 14 6 -0.8274 -5.6747 -2.8542 15 1 -0.6072 -6.6143 -2.3472 16 6 -1.2540 -5.9292 -4.2770 17 1 -0.7114 -5.4748 -5.0929 18 6 -2.3368 -6.7419 -4.5372 19 7 -2.9978 -7.2947 -3.5438 20 14 -2.8661 -7.0567 -6.3009 21 1 -1.7512 -7.6950 -7.0457 22 1 -4.0475 -7.9563 -6.3102 23 1 -3.2204 -5.7683 -6.9488 24 6 0.4049 -4.7371 -2.8172 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3634 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6675 2.1277 0.0004 29 1 5.3047 0.1286 -0.0005 30 1 4.1738 -2.0587 0.0095 31 1 0.6187 -2.4554 0.6612 32 1 2.1547 -3.2997 0.3510 33 1 0.4632 -2.0867 -1.7360 34 1 -1.4657 -2.8812 -1.4260 35 1 -1.4423 -4.1093 -0.1295 36 1 -2.5497 -4.3518 -2.7993 37 1 -2.5257 -5.5803 -1.5028 38 1 -3.7595 -7.8669 -3.7269 39 1 1.3270 -5.3062 -2.9358 40 1 0.3271 -3.9663 -3.5840 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295143406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:56 Heat of formation + Delta-G solvation = 13.200894 kcal Electronic energy + Delta-G solvation = -19027.719633 eV Core-core repulsion = 16227.074579 eV Total energy + Delta-G solvation = -2800.645054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45169 -37.94114 -35.30857 -33.19241 -32.42133 -31.39473 -28.13881 -27.78380 -27.00398 -24.94688 -23.37432 -22.71823 -21.42176 -19.69245 -19.05249 -16.83171 -16.62602 -16.26424 -15.43687 -15.18195 -14.72282 -14.43430 -14.14446 -13.87266 -13.57592 -13.22087 -12.89422 -12.65699 -12.55573 -12.28402 -12.02025 -11.63806 -11.54951 -11.14113 -10.95594 -10.66536 -10.55350 -10.19018 -9.88978 -9.63929 -9.55324 -9.53984 -9.11949 -9.00647 -8.73547 -8.36369 -8.06463 -5.99209 -4.01470 1.01755 1.14688 3.33179 3.37734 3.40650 3.65671 4.33490 4.40268 4.47458 4.61328 4.72494 4.81115 4.87667 5.27421 5.31659 5.34352 5.38076 5.40674 5.55327 5.59468 5.62090 5.72566 5.80505 5.86147 6.01191 6.16770 6.29037 6.43571 6.61365 6.62387 6.70552 6.82125 7.01584 7.10732 7.33368 7.44282 7.60519 7.70995 7.86738 7.91269 8.04194 8.49299 9.01816 9.62529 11.10657 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039157 B = 0.003698 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.891734 B = 7569.634424 C = 7666.051190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.132 4.132 3 C 0.095 3.905 4 N -0.488 5.488 5 C 0.088 3.912 6 C -0.151 4.151 7 C -0.033 4.033 8 C 0.093 3.907 9 N -0.676 5.676 10 C 0.079 3.921 11 H 0.073 0.927 12 C -0.152 4.152 13 C -0.095 4.095 14 C 0.048 3.952 15 H 0.029 0.971 16 C -0.512 4.512 17 H 0.055 0.945 18 C 0.061 3.939 19 N -0.892 5.892 20 Si 0.889 3.111 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.099 4.099 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.135 0.865 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.339 0.661 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.259 0.741 39 H 0.048 0.952 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.301 12.739 9.462 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.135 4.135 3 C -0.062 4.062 4 N -0.196 5.196 5 C -0.069 4.069 6 C -0.172 4.172 7 C -0.041 4.041 8 C -0.036 4.036 9 N -0.307 5.307 10 C -0.030 4.030 11 H 0.091 0.909 12 C -0.191 4.191 13 C -0.133 4.133 14 C 0.029 3.971 15 H 0.048 0.952 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.137 4.137 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.153 0.847 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.159 0.841 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.195 13.137 9.316 18.545 hybrid contribution -1.693 -0.792 -0.494 1.933 sum 7.502 12.345 8.821 16.926 Atomic orbital electron populations 1.20804 0.90352 1.03445 1.02659 1.20839 0.97515 0.93770 1.01350 1.22603 0.89954 0.97255 0.96395 1.67637 1.08318 1.31540 1.12121 1.22702 1.00230 0.87731 0.96226 1.22058 0.94534 0.99665 1.00923 1.20218 0.93859 0.94909 0.95108 1.20926 0.98062 0.92824 0.91775 1.60784 1.45997 1.05346 1.18571 1.22651 0.91349 0.89156 0.99837 0.90876 1.22983 0.96692 0.99844 0.99597 1.22038 0.98842 0.95980 0.96473 1.19448 0.89162 0.92998 0.95530 0.95237 1.21132 1.13142 1.28788 0.91966 0.92688 1.24983 0.96564 0.95688 0.96759 1.69959 1.20220 1.32199 1.30631 0.86718 0.78023 0.78112 0.85488 1.20284 1.21404 1.20331 1.22538 0.99389 0.98536 0.93254 0.90858 0.90916 0.91164 0.83050 0.82932 0.84690 0.93896 0.90006 0.84127 0.93481 0.93706 0.93082 0.92887 0.93100 0.93304 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.34 36.01 0.34 -0.73 16 2 C -0.13 -1.46 5.90 -104.48 -0.62 -2.07 16 3 C 0.10 1.05 10.86 -17.55 -0.19 0.86 16 4 N -0.49 -6.00 10.36 -13.25 -0.14 -6.14 16 5 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 6 C -0.15 -1.65 9.78 -39.44 -0.39 -2.04 16 7 C -0.03 -0.38 5.43 -104.32 -0.57 -0.95 16 8 C 0.09 1.13 4.95 -4.97 -0.02 1.10 16 9 N -0.68 -9.81 6.34 -106.12 -0.67 -10.48 16 10 C 0.08 1.34 3.19 -65.95 -0.21 1.13 16 11 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 12 C -0.15 -2.68 6.51 -25.51 -0.17 -2.85 16 13 C -0.09 -2.14 5.60 -25.61 -0.14 -2.29 16 14 C 0.05 1.16 2.73 -90.11 -0.25 0.92 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.51 -13.99 8.36 -34.44 -0.29 -14.28 16 17 H 0.05 1.49 7.77 -52.48 -0.41 1.08 16 18 C 0.06 1.70 5.35 -17.82 -0.10 1.61 16 19 N -0.89 -25.58 12.63 55.43 0.70 -24.88 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.10 -2.02 5.96 -24.74 -0.15 -2.17 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.07 0.72 5.44 -51.93 -0.28 0.44 16 28 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 29 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.04 0.51 7.39 -51.93 -0.38 0.12 16 32 H 0.08 0.96 7.98 -51.93 -0.41 0.54 16 33 H 0.34 4.86 6.41 -39.29 -0.25 4.60 16 34 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 1.24 7.83 -51.93 -0.41 0.83 16 37 H 0.05 1.28 8.06 -51.93 -0.42 0.87 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.24 8.04 -51.93 -0.42 0.82 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -29.31 322.73 -9.50 -38.81 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.29 Total: 2.55 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.94 Total: -21.00 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.11 Total: -41.49 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.31 -9.50 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295143406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.010 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds