Wall clock time and date at job start Mon Mar 30 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47695 * 2 1 4 4 C 1.50699 * 109.47905 * 59.97075 * 3 2 1 5 5 C 1.38235 * 119.99734 * 89.75822 * 4 3 2 6 6 C 1.38235 * 120.00346 * 179.76855 * 5 4 3 7 7 C 1.38240 * 119.99572 * 0.47634 * 6 5 4 8 8 C 1.38233 * 120.00102 * 359.79748 * 7 6 5 9 9 C 1.38232 * 120.00382 * 270.02725 * 4 3 2 10 10 C 1.53086 * 109.48351 * 179.97438 * 3 2 1 11 11 C 1.53182 * 109.16548 * 62.37469 * 10 3 2 12 12 C 1.53175 * 109.03697 * 56.97679 * 11 10 3 13 13 C 1.53100 * 109.16385 * 303.02455 * 12 11 10 14 14 H 1.09005 * 109.47747 * 297.61229 * 13 12 11 15 15 C 1.50695 * 109.47738 * 177.59133 * 13 12 11 16 16 H 1.08004 * 120.00546 * 0.27580 * 15 13 12 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00224 * 19 17 15 23 23 O 1.42897 * 109.41628 * 57.60793 * 13 12 11 24 24 H 1.08997 * 109.47867 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47169 * 300.00200 * 1 2 3 26 26 H 1.09004 * 109.46721 * 59.99849 * 1 2 3 27 27 H 1.09001 * 109.47169 * 239.99800 * 2 1 3 28 28 H 1.09008 * 109.47186 * 120.00176 * 2 1 3 29 29 H 1.08001 * 119.99814 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.00427 * 180.25264 * 6 5 4 31 31 H 1.07994 * 120.00167 * 179.76932 * 7 6 5 32 32 H 1.08003 * 120.00424 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.99844 * 0.02562 * 9 4 3 34 34 H 1.09000 * 109.52094 * 302.46756 * 10 3 2 35 35 H 1.08998 * 109.52577 * 182.27851 * 10 3 2 36 36 H 1.09007 * 109.53698 * 297.11460 * 11 10 3 37 37 H 1.08996 * 109.54503 * 176.84679 * 11 10 3 38 38 H 1.09002 * 109.52526 * 183.11827 * 12 11 10 39 39 H 1.09003 * 109.57250 * 62.95695 * 12 11 10 40 40 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5373 2.1533 1.2300 5 6 2.2815 2.1295 2.3947 6 6 1.8228 2.7855 3.5217 7 6 0.6150 3.4571 3.4868 8 6 -0.1319 3.4762 2.3238 9 6 0.3294 2.8244 1.1953 10 6 3.5709 1.4426 0.0006 11 6 4.0744 0.7716 -1.2810 12 6 3.4935 1.5080 -2.4920 13 6 1.9655 1.5053 -2.3963 14 1 1.6012 0.4785 -2.4278 15 6 1.3883 2.2792 -3.5534 16 1 2.0446 2.7244 -4.2865 17 6 0.0218 2.4136 -3.6796 18 7 -0.7777 1.8670 -2.7899 19 14 -0.6938 3.3735 -5.1135 20 1 0.4090 3.8850 -5.9663 21 1 -1.5686 2.4830 -5.9178 22 1 -1.4907 4.5150 -4.5965 23 8 1.5654 2.1157 -1.1678 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.2230 1.6011 2.4232 30 1 2.4062 2.7703 4.4305 31 1 0.2547 3.9665 4.3683 32 1 -1.0758 4.0005 2.2967 33 1 -0.2543 2.8390 0.2868 34 1 3.9349 0.8913 0.8677 35 1 3.9351 2.4692 0.0415 36 1 3.7520 -0.2696 -1.2983 37 1 5.1629 0.8182 -1.3136 38 1 3.8020 1.0035 -3.4076 39 1 3.8560 2.5360 -2.5026 40 1 -1.7390 1.9619 -2.8785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310081310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:31 Heat of formation + Delta-G solvation = -34.383113 kcal Electronic energy + Delta-G solvation = -20716.117692 eV Core-core repulsion = 17881.116490 eV Total energy + Delta-G solvation = -2835.001202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.74007 -37.74873 -33.59389 -32.70095 -31.96257 -30.57365 -30.04870 -28.70140 -25.71566 -23.79007 -22.59413 -22.00722 -21.33729 -20.29641 -18.01829 -16.86122 -16.27145 -15.29106 -14.76614 -14.46947 -14.38928 -14.24457 -13.81395 -13.33605 -12.97043 -12.82355 -12.52314 -12.17440 -12.00027 -11.82896 -11.52780 -11.09910 -10.99565 -10.92951 -10.59898 -10.51068 -10.39851 -10.30101 -10.20662 -9.95476 -9.68439 -9.44114 -8.82787 -8.46188 -8.42074 -8.23077 -7.73069 -6.01903 -4.12623 1.82445 1.91336 3.29430 3.38076 3.41611 4.27485 4.41431 4.87427 5.23022 5.32263 5.36360 5.48805 5.51673 5.61534 5.68624 5.82992 5.90560 5.92122 6.05236 6.13148 6.25280 6.31009 6.34547 6.41133 6.46783 6.56306 6.60895 6.71813 6.76040 6.86434 6.88397 6.88844 6.93485 7.00031 7.14755 7.29603 7.52869 7.56210 7.58186 7.95662 8.31172 8.79793 9.14974 9.57408 11.04420 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008066 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.708374 B = 3470.529364 C = 4198.932062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.131 4.131 3 C 0.150 3.850 4 C -0.052 4.052 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.131 4.131 9 C -0.081 4.081 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.146 4.146 13 C 0.217 3.783 14 H 0.021 0.979 15 C -0.523 4.523 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.858 5.858 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.283 1.283 23 O -0.339 6.339 24 H 0.030 0.970 25 H 0.041 0.959 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.044 0.956 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.136 -1.267 9.247 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C 0.109 3.891 4 C -0.052 4.052 5 C -0.141 4.141 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.099 4.099 10 C -0.174 4.174 11 C -0.159 4.159 12 C -0.183 4.183 13 C 0.162 3.838 14 H 0.038 0.962 15 C -0.560 4.560 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.494 5.494 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 O -0.258 6.258 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.133 0.867 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.840 -1.132 9.295 10.121 hybrid contribution -0.193 0.296 -0.600 0.697 sum 3.648 -0.835 8.695 9.466 Atomic orbital electron populations 1.21993 0.94802 1.00194 1.05123 1.21956 0.97893 0.96361 1.00656 1.19967 0.90877 0.91197 0.87073 1.19774 0.94532 0.96934 0.93923 1.21005 0.99773 1.00450 0.92878 1.20944 0.96765 0.99418 0.97953 1.21013 0.95565 1.00658 0.97884 1.21178 0.99896 1.00391 0.93414 1.21346 0.95666 0.94345 0.98551 1.22188 0.96956 1.00860 0.97441 1.21662 0.98919 0.99533 0.95768 1.22276 1.00635 0.99486 0.95953 1.19733 0.87015 0.94653 0.82397 0.96155 1.21044 0.91624 1.36661 1.06686 0.91957 1.24995 0.97208 0.94678 0.95605 1.69866 1.03250 1.42441 1.33867 0.86590 0.79128 0.79972 0.82552 1.19806 1.21042 1.20943 1.88380 1.74103 1.51658 1.11684 0.95077 0.93975 0.86706 0.91409 0.93678 0.86471 0.86897 0.87030 0.86671 0.84040 0.92507 0.91805 0.92404 0.93273 0.92619 0.92622 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 9.17 37.15 0.34 -3.00 16 2 C -0.13 -2.53 4.28 -26.73 -0.11 -2.64 16 3 C 0.15 2.99 0.64 -91.73 -0.06 2.93 16 4 C -0.05 -0.97 4.28 -104.63 -0.45 -1.42 16 5 C -0.12 -1.99 9.14 -39.58 -0.36 -2.35 16 6 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 7 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 8 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 9 C -0.08 -1.57 7.53 -39.58 -0.30 -1.87 16 10 C -0.14 -2.42 4.14 -26.59 -0.11 -2.53 16 11 C -0.12 -2.14 5.72 -26.55 -0.15 -2.29 16 12 C -0.15 -3.05 5.36 -26.59 -0.14 -3.19 16 13 C 0.22 5.35 2.17 -27.83 -0.06 5.29 16 14 H 0.02 0.54 6.34 -51.93 -0.33 0.21 16 15 C -0.52 -14.17 8.79 -34.44 -0.30 -14.47 16 16 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 17 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 18 N -0.86 -23.33 11.26 55.43 0.62 -22.71 16 19 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 O -0.34 -8.22 7.59 -35.23 -0.27 -8.49 16 24 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.82 6.17 -51.93 -0.32 0.50 16 26 H 0.11 2.72 6.04 -51.93 -0.31 2.41 16 27 H 0.07 1.35 4.97 -51.93 -0.26 1.10 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.12 1.68 6.24 -52.49 -0.33 1.35 16 30 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.14 3.15 7.45 -52.49 -0.39 2.76 16 34 H 0.06 0.87 6.66 -51.93 -0.35 0.52 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.99 6.62 -51.93 -0.34 0.65 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 306.06 15.07 4.61 4.61 Total: -1.00 -27.60 306.06 -9.03 -36.63 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.98 Total: 4.80 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -3.00 Total: -30.68 kcal Atomic # 7 Polarization: -23.33 SS G_CDS: 0.62 Total: -22.71 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.27 Total: -8.49 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.60 -9.03 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310081310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.242 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds