Wall clock time and date at job start Mon Mar 30 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47695 * 2 1 4 4 C 1.50699 * 109.47905 * 59.97075 * 3 2 1 5 5 C 1.38235 * 119.99734 * 89.75822 * 4 3 2 6 6 C 1.38235 * 120.00346 * 179.76855 * 5 4 3 7 7 C 1.38240 * 119.99572 * 0.47634 * 6 5 4 8 8 C 1.38233 * 120.00102 * 359.79748 * 7 6 5 9 9 C 1.38232 * 120.00382 * 270.02725 * 4 3 2 10 10 C 1.53086 * 109.48351 * 179.97438 * 3 2 1 11 11 C 1.53182 * 109.16548 * 62.37469 * 10 3 2 12 12 C 1.53175 * 109.03697 * 56.97679 * 11 10 3 13 13 C 1.53100 * 109.16385 * 303.02455 * 12 11 10 14 14 H 1.09005 * 109.47747 * 297.61229 * 13 12 11 15 15 C 1.50695 * 109.47738 * 177.59133 * 13 12 11 16 16 H 1.08004 * 120.00546 * 0.27580 * 15 13 12 17 17 C 1.37885 * 119.99721 * 179.97438 * 15 13 12 18 18 N 1.31514 * 120.00035 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99853 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47228 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46793 * 120.00131 * 19 17 15 22 22 H 1.48500 * 109.47000 * 240.00224 * 19 17 15 23 23 O 1.42897 * 109.41628 * 57.60793 * 13 12 11 24 24 H 1.08997 * 109.47867 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47169 * 300.00200 * 1 2 3 26 26 H 1.09004 * 109.46721 * 59.99849 * 1 2 3 27 27 H 1.09001 * 109.47169 * 239.99800 * 2 1 3 28 28 H 1.09008 * 109.47186 * 120.00176 * 2 1 3 29 29 H 1.08001 * 119.99814 * 359.97438 * 5 4 3 30 30 H 1.08003 * 120.00427 * 180.25264 * 6 5 4 31 31 H 1.07994 * 120.00167 * 179.76932 * 7 6 5 32 32 H 1.08003 * 120.00424 * 179.97438 * 8 7 6 33 33 H 1.07999 * 119.99844 * 0.02562 * 9 4 3 34 34 H 1.09000 * 109.52094 * 302.46756 * 10 3 2 35 35 H 1.08998 * 109.52577 * 182.27851 * 10 3 2 36 36 H 1.09007 * 109.53698 * 297.11460 * 11 10 3 37 37 H 1.08996 * 109.54503 * 176.84679 * 11 10 3 38 38 H 1.09002 * 109.52526 * 183.11827 * 12 11 10 39 39 H 1.09003 * 109.57250 * 62.95695 * 12 11 10 40 40 H 0.97000 * 119.99706 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5373 2.1533 1.2300 5 6 2.2815 2.1295 2.3947 6 6 1.8228 2.7855 3.5217 7 6 0.6150 3.4571 3.4868 8 6 -0.1319 3.4762 2.3238 9 6 0.3294 2.8244 1.1953 10 6 3.5709 1.4426 0.0006 11 6 4.0744 0.7716 -1.2810 12 6 3.4935 1.5080 -2.4920 13 6 1.9655 1.5053 -2.3963 14 1 1.6012 0.4785 -2.4278 15 6 1.3883 2.2792 -3.5534 16 1 2.0446 2.7244 -4.2865 17 6 0.0218 2.4136 -3.6796 18 7 -0.7777 1.8670 -2.7899 19 14 -0.6938 3.3735 -5.1135 20 1 0.4090 3.8850 -5.9663 21 1 -1.5686 2.4830 -5.9178 22 1 -1.4907 4.5150 -4.5965 23 8 1.5654 2.1157 -1.1678 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.2230 1.6011 2.4232 30 1 2.4062 2.7703 4.4305 31 1 0.2547 3.9665 4.3683 32 1 -1.0758 4.0005 2.2967 33 1 -0.2543 2.8390 0.2868 34 1 3.9349 0.8913 0.8677 35 1 3.9351 2.4692 0.0415 36 1 3.7520 -0.2696 -1.2983 37 1 5.1629 0.8182 -1.3136 38 1 3.8020 1.0035 -3.4076 39 1 3.8560 2.5360 -2.5026 40 1 -1.7390 1.9619 -2.8785 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310081310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:31 Heat of formation + Delta-G solvation = -47.667290 kcal Electronic energy + Delta-G solvation = -20716.693737 eV Core-core repulsion = 17881.116490 eV Total energy + Delta-G solvation = -2835.577247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.21611 -39.16774 -35.34104 -34.28151 -33.82936 -31.96734 -31.40638 -30.30451 -27.51851 -25.38767 -24.11455 -23.50354 -22.77322 -21.78885 -19.59668 -18.65295 -17.84210 -16.78300 -16.59096 -15.97263 -15.90183 -15.74412 -15.28250 -14.81635 -14.47655 -14.32742 -14.13758 -13.81330 -13.42120 -13.23399 -13.07270 -12.85498 -12.75529 -12.50579 -12.30245 -12.25082 -11.97431 -11.83444 -11.67339 -11.57567 -11.37900 -11.05608 -10.75233 -10.34238 -9.72883 -9.65006 -9.32399 -8.06031 -6.24828 0.56798 0.64348 1.39800 1.42523 1.52729 2.43341 2.97040 3.11605 3.61433 3.86420 4.06143 4.13499 4.22291 4.27547 4.34209 4.37469 4.43103 4.47240 4.61158 4.71241 4.80160 4.83701 4.87868 4.97890 5.06078 5.11004 5.14688 5.20126 5.22155 5.27433 5.35076 5.37131 5.46025 5.63356 5.69162 5.76682 5.81019 5.94890 5.99547 6.25685 6.33732 6.75884 7.35036 7.49980 8.98045 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008066 C = 0.006667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.708374 B = 3470.529364 C = 4198.932062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.125 4.125 3 C 0.140 3.860 4 C -0.073 4.073 5 C -0.124 4.124 6 C -0.124 4.124 7 C -0.126 4.126 8 C -0.138 4.138 9 C -0.110 4.110 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.142 4.142 13 C 0.220 3.780 14 H -0.006 1.006 15 C -0.553 4.553 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.875 5.875 19 Si 0.950 3.050 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.284 1.284 23 O -0.366 6.366 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.153 0.847 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.700 -1.253 11.700 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.163 4.163 3 C 0.100 3.900 4 C -0.073 4.073 5 C -0.142 4.142 6 C -0.141 4.141 7 C -0.144 4.144 8 C -0.156 4.156 9 C -0.129 4.129 10 C -0.169 4.169 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.164 3.836 14 H 0.011 0.989 15 C -0.590 4.590 16 H 0.073 0.927 17 C -0.169 4.169 18 N -0.512 5.512 19 Si 0.776 3.224 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.210 1.210 23 O -0.286 6.286 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.158 0.842 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.410 -1.123 11.747 12.982 hybrid contribution -0.714 0.307 -1.275 1.493 sum 4.696 -0.816 10.472 11.506 Atomic orbital electron populations 1.21864 0.96096 1.00262 1.03361 1.21905 0.96742 0.96437 1.01207 1.20240 0.92552 0.91191 0.86017 1.19799 0.94938 0.97979 0.94612 1.21256 1.00168 1.00572 0.92164 1.21423 0.96605 0.97439 0.98661 1.21417 0.95200 0.99853 0.97945 1.21352 1.00780 1.00108 0.93388 1.21084 0.96454 0.97198 0.98134 1.22162 0.94969 1.01045 0.98740 1.21633 1.00550 0.99107 0.93968 1.22163 0.98210 0.99525 0.98093 1.19488 0.89129 0.92568 0.82366 0.98876 1.21397 0.92185 1.37289 1.08132 0.92703 1.25713 0.97618 0.95596 0.97926 1.70020 1.03169 1.43043 1.34937 0.85653 0.78320 0.78615 0.79812 1.19445 1.20289 1.21030 1.88286 1.75152 1.52421 1.12750 0.93922 0.93873 0.90375 0.92648 0.90927 0.84185 0.82933 0.83485 0.85624 0.88624 0.89056 0.92468 0.91909 0.90173 0.92368 0.93655 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.67 9.17 71.98 0.66 -6.01 16 2 C -0.13 -4.81 4.28 30.59 0.13 -4.68 16 3 C 0.14 5.58 0.64 -11.51 -0.01 5.58 16 4 C -0.07 -2.72 4.28 -19.87 -0.08 -2.80 16 5 C -0.12 -3.59 9.14 22.27 0.20 -3.39 16 6 C -0.12 -3.03 10.05 22.27 0.22 -2.80 16 7 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 8 C -0.14 -4.45 10.05 22.27 0.22 -4.22 16 9 C -0.11 -4.41 7.53 22.27 0.17 -4.24 16 10 C -0.13 -4.38 4.14 30.68 0.13 -4.25 16 11 C -0.12 -3.86 5.72 30.71 0.18 -3.68 16 12 C -0.14 -6.01 5.36 30.69 0.16 -5.84 16 13 C 0.22 11.29 2.17 29.88 0.06 11.36 16 14 H -0.01 -0.35 6.34 -2.38 -0.02 -0.36 16 15 C -0.55 -31.32 8.79 25.60 0.23 -31.09 16 16 H 0.05 3.08 7.74 -2.91 -0.02 3.05 16 17 C 0.04 1.96 5.40 84.66 0.46 2.42 16 18 N -0.88 -50.15 11.26 21.45 0.24 -49.90 16 19 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 O -0.37 -18.54 7.59 -148.98 -1.13 -19.67 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.75 6.17 -2.39 -0.01 1.74 16 26 H 0.08 3.94 6.04 -2.39 -0.01 3.92 16 27 H 0.05 2.24 4.97 -2.39 -0.01 2.23 16 28 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.14 3.35 6.24 -2.91 -0.02 3.33 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 33 H 0.10 4.64 7.45 -2.91 -0.02 4.62 16 34 H 0.09 2.41 6.66 -2.39 -0.02 2.39 16 35 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.06 2.05 6.62 -2.38 -0.02 2.03 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -63.42 306.06 5.11 -58.32 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.01 Total: 21.63 kcal Atomic # 6 Polarization: -59.65 SS G_CDS: 2.96 Total: -56.69 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: 0.24 Total: -49.90 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -1.13 Total: -19.67 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -63.42 5.11 -58.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310081310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.650 kcal (2) G-P(sol) polarization free energy of solvation -63.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds