Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.50702 * 109.47919 * 307.62188 * 3 2 1 5 5 C 1.38243 * 119.99676 * 89.70331 * 4 3 2 6 6 C 1.38231 * 119.99925 * 179.81067 * 5 4 3 7 7 C 1.38242 * 119.99862 * 0.42072 * 6 5 4 8 8 C 1.38228 * 119.99967 * 359.80759 * 7 6 5 9 9 C 1.38231 * 120.00155 * 0.02562 * 8 7 6 10 10 C 1.53092 * 109.48112 * 67.65950 * 3 2 1 11 11 C 1.53168 * 109.16412 * 62.37454 * 10 3 2 12 12 C 1.53207 * 109.04141 * 56.98249 * 11 10 3 13 13 C 1.53085 * 109.15006 * 303.02481 * 12 11 10 14 14 H 1.09004 * 109.48360 * 177.59210 * 13 12 11 15 15 C 1.50698 * 109.48101 * 297.61671 * 13 12 11 16 16 H 1.08004 * 120.00306 * 5.07568 * 15 13 12 17 17 C 1.37885 * 120.00221 * 184.79962 * 15 13 12 18 18 N 1.31516 * 119.99737 * 6.54105 * 17 15 13 19 19 Si 1.86798 * 120.00056 * 186.53894 * 17 15 13 20 20 H 1.48499 * 109.47029 * 60.00564 * 19 17 15 21 21 H 1.48505 * 109.46869 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47448 * 299.99969 * 19 17 15 23 23 O 1.42901 * 109.42517 * 57.60393 * 13 12 11 24 24 H 1.08994 * 109.47277 * 65.70368 * 1 2 3 25 25 H 1.09000 * 109.46831 * 185.70217 * 1 2 3 26 26 H 1.08996 * 109.47284 * 305.70312 * 1 2 3 27 27 H 1.09002 * 109.47008 * 239.99779 * 2 1 3 28 28 H 1.09006 * 109.47433 * 119.99918 * 2 1 3 29 29 H 1.07994 * 119.99897 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.00361 * 180.21022 * 6 5 4 31 31 H 1.07999 * 119.99609 * 179.79170 * 7 6 5 32 32 H 1.08007 * 120.00062 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.00130 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.52086 * 182.28572 * 10 3 2 35 35 H 1.09002 * 109.52107 * 302.40226 * 10 3 2 36 36 H 1.09007 * 109.54623 * 176.84435 * 11 10 3 37 37 H 1.08998 * 109.54745 * 297.02809 * 11 10 3 38 38 H 1.09004 * 109.53492 * 183.11529 * 12 11 10 39 39 H 1.09002 * 109.51921 * 62.92345 * 12 11 10 40 40 H 0.96996 * 120.00263 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3898 2.2054 -1.1253 5 6 0.1945 2.8663 -0.9122 6 6 -0.4000 3.5693 -1.9433 7 6 0.1965 3.6043 -3.1899 8 6 1.3893 2.9395 -3.4043 9 6 1.9855 2.2393 -2.3722 10 6 1.6930 2.1067 1.3349 11 6 2.4058 1.3617 2.4676 12 6 3.9132 1.3599 2.1937 13 6 4.1742 0.7246 0.8255 14 1 5.2414 0.7593 0.6063 15 6 3.7105 -0.7092 0.8405 16 1 3.1994 -1.1025 1.7069 17 6 3.9337 -1.5174 -0.2541 18 7 4.6619 -1.0790 -1.2576 19 14 3.2016 -3.2350 -0.3116 20 1 1.7217 -3.1454 -0.2276 21 1 3.5856 -3.8943 -1.5857 22 1 3.7152 -4.0306 0.8323 23 8 3.4579 1.4467 -0.1782 24 1 -0.3633 0.4228 -0.9366 25 1 -0.3633 -1.0226 0.1021 26 1 -0.3634 0.5997 0.8345 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -0.2732 2.8362 0.0608 30 1 -1.3321 4.0885 -1.7760 31 1 -0.2697 4.1508 -3.9964 32 1 1.8551 2.9665 -4.3783 33 1 2.9173 1.7196 -2.5398 34 1 2.0200 3.1465 1.3203 35 1 0.6152 2.0661 1.4927 36 1 2.2081 1.8632 3.4151 37 1 2.0414 0.3355 2.5151 38 1 4.4233 0.7842 2.9660 39 1 4.2851 2.3845 2.1965 40 1 4.8192 -1.6477 -2.0275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310081311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -16.240133 kcal Electronic energy + Delta-G solvation = -21121.664807 eV Core-core repulsion = 18287.450343 eV Total energy + Delta-G solvation = -2834.214464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82713 -37.83921 -33.47792 -32.52999 -32.47710 -30.31819 -29.94538 -28.47951 -25.70717 -23.85164 -23.23584 -21.50462 -21.37461 -20.03959 -18.06873 -16.80060 -16.23194 -15.17529 -14.81459 -14.66821 -14.33335 -13.85332 -13.74396 -13.15613 -12.89289 -12.80033 -12.54567 -12.12010 -11.95179 -11.85480 -11.67566 -11.22653 -11.02118 -10.77263 -10.71180 -10.59485 -10.48975 -10.24848 -9.99064 -9.80589 -9.54159 -9.21049 -8.72191 -8.38865 -8.25336 -8.20868 -7.73222 -6.05648 -4.02559 1.87555 1.94370 3.26702 3.32451 3.35773 4.32177 4.36792 4.94873 5.31307 5.32274 5.40431 5.57410 5.62298 5.75695 5.76091 5.89144 6.03104 6.11603 6.14219 6.18880 6.25643 6.39689 6.43719 6.47945 6.49290 6.59826 6.66508 6.79266 6.87144 6.89722 6.96446 7.00876 7.06582 7.13480 7.28639 7.43615 7.55755 7.65181 7.79899 7.90768 8.17911 8.77606 9.02764 9.51549 11.00132 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.009147 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.153677 B = 3060.401745 C = 3484.854631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.141 4.141 3 C 0.176 3.824 4 C -0.049 4.049 5 C -0.120 4.120 6 C -0.132 4.132 7 C -0.136 4.136 8 C -0.129 4.129 9 C -0.091 4.091 10 C -0.135 4.135 11 C -0.111 4.111 12 C -0.143 4.143 13 C 0.210 3.790 14 H 0.067 0.933 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.083 3.917 18 N -0.860 5.860 19 Si 0.869 3.131 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.276 1.276 23 O -0.368 6.368 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.588 6.121 0.724 9.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.178 4.178 3 C 0.136 3.864 4 C -0.049 4.049 5 C -0.138 4.138 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.147 4.147 9 C -0.108 4.108 10 C -0.173 4.173 11 C -0.149 4.149 12 C -0.180 4.180 13 C 0.155 3.845 14 H 0.085 0.915 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.122 4.122 18 N -0.496 5.496 19 Si 0.695 3.305 20 H -0.194 1.194 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.287 6.287 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.402 6.179 0.385 9.650 hybrid contribution -0.599 -1.118 0.000 1.269 sum -8.002 5.060 0.385 9.475 Atomic orbital electron populations 1.22138 0.99548 0.99942 1.00293 1.22977 0.91343 0.96586 1.06911 1.19675 0.84255 0.93350 0.89163 1.19967 0.94094 0.95641 0.95229 1.21024 0.95875 0.97896 0.98966 1.20959 0.99912 1.00597 0.93577 1.20985 0.96526 1.01002 0.96940 1.21141 0.96005 0.98606 0.98958 1.21245 1.00138 0.97411 0.92051 1.22179 0.99383 0.99214 0.96520 1.21506 0.96561 1.00690 0.96100 1.22191 0.95327 0.99370 1.01155 1.19721 0.93234 0.89384 0.82207 0.91499 1.21260 1.39151 0.96275 1.01689 0.92160 1.24900 0.94477 0.97097 0.95751 1.69977 1.35885 1.36439 1.07305 0.87043 0.80541 0.85350 0.77534 1.19425 1.21201 1.20194 1.87934 1.14144 1.74464 1.52173 0.93909 0.94132 0.93748 0.91454 0.85857 0.86393 0.86941 0.87092 0.86774 0.84680 0.92711 0.92265 0.94065 0.91093 0.92464 0.94054 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.72 37.16 0.32 -2.66 16 2 C -0.14 -3.06 3.02 -26.73 -0.08 -3.14 16 3 C 0.18 3.68 0.74 -91.72 -0.07 3.61 16 4 C -0.05 -0.96 4.05 -104.62 -0.42 -1.38 16 5 C -0.12 -2.00 7.40 -39.58 -0.29 -2.29 16 6 C -0.13 -1.98 10.05 -39.58 -0.40 -2.37 16 7 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 8 C -0.13 -2.14 10.05 -39.59 -0.40 -2.54 16 9 C -0.09 -1.79 9.35 -39.59 -0.37 -2.16 16 10 C -0.14 -2.49 4.00 -26.60 -0.11 -2.60 16 11 C -0.11 -2.05 5.62 -26.54 -0.15 -2.20 16 12 C -0.14 -2.90 5.60 -26.58 -0.15 -3.05 16 13 C 0.21 5.08 3.05 -27.84 -0.08 4.99 16 14 H 0.07 1.78 8.12 -51.93 -0.42 1.36 16 15 C -0.55 -13.71 4.65 -34.44 -0.16 -13.87 16 16 H 0.06 1.49 6.05 -52.48 -0.32 1.17 16 17 C 0.08 2.17 3.73 -17.82 -0.07 2.11 16 18 N -0.86 -23.79 13.18 55.43 0.73 -23.06 16 19 Si 0.87 20.28 28.68 -169.99 -4.87 15.41 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 O -0.37 -8.95 8.95 -35.23 -0.32 -9.26 16 24 H 0.04 0.78 6.57 -51.93 -0.34 0.44 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.73 6.27 -51.93 -0.33 0.40 16 27 H 0.07 1.67 6.18 -51.93 -0.32 1.35 16 28 H 0.12 2.81 2.90 -51.93 -0.15 2.66 16 29 H 0.12 1.79 6.09 -52.49 -0.32 1.47 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.14 3.00 7.49 -52.48 -0.39 2.60 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.97 4.97 -51.93 -0.26 0.71 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.37 5.54 -51.93 -0.29 1.08 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -26.93 295.57 -8.48 -35.41 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -5.65 Total: 7.03 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: -2.82 Total: -29.98 kcal Atomic # 7 Polarization: -23.79 SS G_CDS: 0.73 Total: -23.06 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.32 Total: -9.26 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.87 Total: 15.41 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.93 -8.48 -35.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310081311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.173 kcal (2) G-P(sol) polarization free energy of solvation -26.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds