Wall clock time and date at job start Mon Mar 30 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.50702 * 109.47919 * 307.62188 * 3 2 1 5 5 C 1.38243 * 119.99676 * 89.70331 * 4 3 2 6 6 C 1.38231 * 119.99925 * 179.81067 * 5 4 3 7 7 C 1.38242 * 119.99862 * 0.42072 * 6 5 4 8 8 C 1.38228 * 119.99967 * 359.80759 * 7 6 5 9 9 C 1.38231 * 120.00155 * 0.02562 * 8 7 6 10 10 C 1.53092 * 109.48112 * 67.65950 * 3 2 1 11 11 C 1.53168 * 109.16412 * 62.37454 * 10 3 2 12 12 C 1.53207 * 109.04141 * 56.98249 * 11 10 3 13 13 C 1.53085 * 109.15006 * 303.02481 * 12 11 10 14 14 H 1.09004 * 109.48360 * 177.59210 * 13 12 11 15 15 C 1.50698 * 109.48101 * 297.61671 * 13 12 11 16 16 H 1.08004 * 120.00306 * 5.07568 * 15 13 12 17 17 C 1.37885 * 120.00221 * 184.79962 * 15 13 12 18 18 N 1.31516 * 119.99737 * 6.54105 * 17 15 13 19 19 Si 1.86798 * 120.00056 * 186.53894 * 17 15 13 20 20 H 1.48499 * 109.47029 * 60.00564 * 19 17 15 21 21 H 1.48505 * 109.46869 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47448 * 299.99969 * 19 17 15 23 23 O 1.42901 * 109.42517 * 57.60393 * 13 12 11 24 24 H 1.08994 * 109.47277 * 65.70368 * 1 2 3 25 25 H 1.09000 * 109.46831 * 185.70217 * 1 2 3 26 26 H 1.08996 * 109.47284 * 305.70312 * 1 2 3 27 27 H 1.09002 * 109.47008 * 239.99779 * 2 1 3 28 28 H 1.09006 * 109.47433 * 119.99918 * 2 1 3 29 29 H 1.07994 * 119.99897 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.00361 * 180.21022 * 6 5 4 31 31 H 1.07999 * 119.99609 * 179.79170 * 7 6 5 32 32 H 1.08007 * 120.00062 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.00130 * 179.97438 * 9 8 7 34 34 H 1.09006 * 109.52086 * 182.28572 * 10 3 2 35 35 H 1.09002 * 109.52107 * 302.40226 * 10 3 2 36 36 H 1.09007 * 109.54623 * 176.84435 * 11 10 3 37 37 H 1.08998 * 109.54745 * 297.02809 * 11 10 3 38 38 H 1.09004 * 109.53492 * 183.11529 * 12 11 10 39 39 H 1.09002 * 109.51921 * 62.92345 * 12 11 10 40 40 H 0.96996 * 120.00263 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.3898 2.2054 -1.1253 5 6 0.1945 2.8663 -0.9122 6 6 -0.4000 3.5693 -1.9433 7 6 0.1965 3.6043 -3.1899 8 6 1.3893 2.9395 -3.4043 9 6 1.9855 2.2393 -2.3722 10 6 1.6930 2.1067 1.3349 11 6 2.4058 1.3617 2.4676 12 6 3.9132 1.3599 2.1937 13 6 4.1742 0.7246 0.8255 14 1 5.2414 0.7593 0.6063 15 6 3.7105 -0.7092 0.8405 16 1 3.1994 -1.1025 1.7069 17 6 3.9337 -1.5174 -0.2541 18 7 4.6619 -1.0790 -1.2576 19 14 3.2016 -3.2350 -0.3116 20 1 1.7217 -3.1454 -0.2276 21 1 3.5856 -3.8943 -1.5857 22 1 3.7152 -4.0306 0.8323 23 8 3.4579 1.4467 -0.1782 24 1 -0.3633 0.4228 -0.9366 25 1 -0.3633 -1.0226 0.1021 26 1 -0.3634 0.5997 0.8345 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 -0.2732 2.8362 0.0608 30 1 -1.3321 4.0885 -1.7760 31 1 -0.2697 4.1508 -3.9964 32 1 1.8551 2.9665 -4.3783 33 1 2.9173 1.7196 -2.5398 34 1 2.0200 3.1465 1.3203 35 1 0.6152 2.0661 1.4927 36 1 2.2081 1.8632 3.4151 37 1 2.0414 0.3355 2.5151 38 1 4.4233 0.7842 2.9660 39 1 4.2851 2.3845 2.1965 40 1 4.8192 -1.6477 -2.0275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310081311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:34 Heat of formation + Delta-G solvation = -30.013973 kcal Electronic energy + Delta-G solvation = -21122.262086 eV Core-core repulsion = 18287.450343 eV Total energy + Delta-G solvation = -2834.811742 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38069 -39.28581 -35.14248 -34.44051 -34.09743 -31.62291 -31.45671 -30.09608 -27.51876 -25.39275 -24.81522 -23.02372 -22.77572 -21.63166 -19.78344 -18.45978 -17.79693 -16.84946 -16.33448 -16.28987 -15.88553 -15.52712 -15.22708 -14.78159 -14.41964 -14.22334 -14.12459 -13.79992 -13.47194 -13.32905 -13.15249 -12.88951 -12.75166 -12.59205 -12.36233 -12.19159 -11.97577 -11.77268 -11.57175 -11.44645 -11.18923 -10.97717 -10.47567 -10.24011 -9.73129 -9.68179 -9.32138 -8.08143 -6.07494 0.58267 0.63206 1.37112 1.40215 1.43675 2.40706 2.99386 3.13786 3.60551 3.94541 4.16915 4.21294 4.26824 4.29952 4.39426 4.43003 4.53259 4.56716 4.70566 4.74410 4.85019 4.88255 4.91836 5.00773 5.07544 5.22153 5.26752 5.27824 5.30690 5.36234 5.41094 5.50643 5.65530 5.67655 5.70566 5.74200 5.85958 5.95459 6.11064 6.22496 6.27916 6.79737 7.22065 7.50444 8.98240 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.020079 B = 0.009147 C = 0.008033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.153677 B = 3060.401745 C = 3484.854631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.167 3.833 4 C -0.072 4.072 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.129 4.129 8 C -0.134 4.134 9 C -0.124 4.124 10 C -0.129 4.129 11 C -0.108 4.108 12 C -0.137 4.137 13 C 0.205 3.795 14 H 0.024 0.976 15 C -0.536 4.536 16 H 0.066 0.934 17 C 0.042 3.958 18 N -0.900 5.900 19 Si 0.917 3.083 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.268 1.268 23 O -0.395 6.395 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.110 0.890 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.128 0.872 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.101 7.601 1.836 13.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.128 3.872 4 C -0.072 4.072 5 C -0.138 4.138 6 C -0.140 4.140 7 C -0.146 4.146 8 C -0.152 4.152 9 C -0.142 4.142 10 C -0.167 4.167 11 C -0.145 4.145 12 C -0.175 4.175 13 C 0.149 3.851 14 H 0.042 0.958 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.160 4.160 18 N -0.538 5.538 19 Si 0.742 3.258 20 H -0.185 1.185 21 H -0.220 1.220 22 H -0.193 1.193 23 O -0.315 6.315 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.127 0.873 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.146 0.854 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.926 7.653 1.519 13.426 hybrid contribution 0.487 -1.496 -0.403 1.624 sum -10.439 6.157 1.116 12.171 Atomic orbital electron populations 1.22030 0.96670 1.00800 1.01462 1.22719 0.93833 0.96739 1.03906 1.19916 0.82233 0.93519 0.91556 1.19968 0.95656 0.97183 0.94400 1.21233 0.94605 0.97355 1.00599 1.21446 1.00769 0.99130 0.92672 1.21412 0.95203 0.99748 0.98277 1.21329 0.96947 0.98213 0.98685 1.21047 0.99602 0.99557 0.94041 1.22143 1.01073 0.98827 0.94621 1.21499 0.94482 1.00767 0.97761 1.22079 0.97512 0.99321 0.98579 1.19592 0.91272 0.89796 0.84424 0.95821 1.21467 1.37787 0.96689 1.01350 0.91601 1.25483 0.94856 1.00064 0.95601 1.70118 1.38088 1.37596 1.08025 0.86259 0.80301 0.81953 0.77242 1.18540 1.21999 1.19284 1.87871 1.16728 1.74248 1.52699 0.93775 0.93796 0.91051 0.95780 0.87276 0.84330 0.82872 0.83358 0.85420 0.89261 0.92483 0.89385 0.90623 0.91882 0.91919 0.93424 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.29 8.72 71.98 0.63 -4.66 16 2 C -0.13 -5.85 3.02 30.59 0.09 -5.76 16 3 C 0.17 7.00 0.74 -11.51 -0.01 7.00 16 4 C -0.07 -2.78 4.05 -19.86 -0.08 -2.86 16 5 C -0.12 -3.61 7.40 22.27 0.16 -3.45 16 6 C -0.12 -3.08 10.05 22.27 0.22 -2.85 16 7 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 8 C -0.13 -4.35 10.05 22.27 0.22 -4.13 16 9 C -0.12 -5.10 9.35 22.27 0.21 -4.89 16 10 C -0.13 -4.43 4.00 30.68 0.12 -4.31 16 11 C -0.11 -3.72 5.62 30.72 0.17 -3.55 16 12 C -0.14 -5.54 5.60 30.69 0.17 -5.36 16 13 C 0.21 10.37 3.05 29.88 0.09 10.46 16 14 H 0.02 1.37 8.12 -2.38 -0.02 1.35 16 15 C -0.54 -27.72 4.65 25.60 0.12 -27.60 16 16 H 0.07 3.28 6.05 -2.91 -0.02 3.26 16 17 C 0.04 2.26 3.73 84.66 0.32 2.57 16 18 N -0.90 -53.11 13.18 21.45 0.28 -52.83 16 19 Si 0.92 42.80 28.68 68.60 1.97 44.76 16 20 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 O -0.40 -20.23 8.95 -148.98 -1.33 -21.56 16 24 H 0.04 1.51 6.57 -2.39 -0.02 1.49 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.07 2.07 6.27 -2.39 -0.01 2.05 16 27 H 0.02 1.22 6.18 -2.39 -0.01 1.21 16 28 H 0.11 4.97 2.90 -2.38 -0.01 4.96 16 29 H 0.14 3.52 6.09 -2.91 -0.02 3.51 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 33 H 0.09 4.39 7.49 -2.91 -0.02 4.37 16 34 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.09 2.50 4.97 -2.39 -0.01 2.49 16 36 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 2.29 5.54 -2.39 -0.01 2.27 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -62.76 295.57 4.61 -58.15 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 1.03 Total: 24.00 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 2.67 Total: -52.52 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.28 Total: -52.83 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -1.33 Total: -21.56 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.97 Total: 44.76 kcal Total: -62.76 4.61 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310081311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.132 kcal (2) G-P(sol) polarization free energy of solvation -62.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds