Wall clock time and date at job start Mon Mar 30 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47017 * 2 1 4 4 C 1.50703 * 109.47944 * 305.02335 * 3 2 1 5 5 C 1.38230 * 119.99861 * 269.70241 * 4 3 2 6 6 C 1.38237 * 119.99914 * 179.78704 * 5 4 3 7 7 C 1.38231 * 120.00166 * 0.44544 * 6 5 4 8 8 C 1.38241 * 119.99529 * 359.80817 * 7 6 5 9 9 C 1.38225 * 120.00496 * 359.97438 * 8 7 6 10 10 C 1.53084 * 109.48179 * 184.99769 * 3 2 1 11 11 C 1.53174 * 109.16456 * 297.62711 * 10 3 2 12 12 C 1.53176 * 109.03724 * 303.01556 * 11 10 3 13 13 C 1.53091 * 109.21206 * 56.94941 * 12 11 10 14 14 H 1.08998 * 109.48266 * 62.40567 * 13 12 11 15 15 C 1.50699 * 109.48010 * 182.43847 * 13 12 11 16 16 H 1.07997 * 120.00019 * 0.02562 * 15 13 12 17 17 C 1.37880 * 119.99807 * 179.97438 * 15 13 12 18 18 N 1.31515 * 120.00303 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99802 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46998 * 90.00302 * 19 17 15 21 21 H 1.48498 * 109.47246 * 210.00223 * 19 17 15 22 22 H 1.48503 * 109.47215 * 329.99888 * 19 17 15 23 23 O 1.42906 * 109.48264 * 65.05464 * 3 2 1 24 24 H 1.08997 * 109.46929 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46832 * 299.99744 * 1 2 3 26 26 H 1.08992 * 109.47369 * 60.00186 * 1 2 3 27 27 H 1.08992 * 109.47433 * 240.00105 * 2 1 3 28 28 H 1.09003 * 109.46916 * 119.99554 * 2 1 3 29 29 H 1.07997 * 120.00082 * 359.97438 * 5 4 3 30 30 H 1.08001 * 120.00245 * 180.27718 * 6 5 4 31 31 H 1.07993 * 120.00265 * 179.83417 * 7 6 5 32 32 H 1.08003 * 119.99307 * 180.02562 * 8 7 6 33 33 H 1.08000 * 120.00454 * 180.02562 * 9 8 7 34 34 H 1.09007 * 109.52269 * 177.71838 * 10 3 2 35 35 H 1.09000 * 109.57238 * 57.56608 * 10 3 2 36 36 H 1.09004 * 109.54572 * 183.15149 * 11 10 3 37 37 H 1.08995 * 109.54814 * 62.88826 * 11 10 3 38 38 H 1.09002 * 109.52410 * 176.88783 * 12 11 10 39 39 H 1.09004 * 109.52533 * 297.01429 * 12 11 10 40 40 H 0.96997 * 120.00102 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4387 2.1881 -1.1635 5 6 2.0903 2.2084 -2.3824 6 6 1.5367 2.8886 -3.4509 7 6 0.3360 3.5563 -3.2979 8 6 -0.3131 3.5403 -2.0774 9 6 0.2383 2.8564 -1.0102 10 6 3.5657 1.4447 -0.1257 11 6 4.1714 0.7375 1.0905 12 6 3.6923 1.4380 2.3657 13 6 2.1617 1.4375 2.3960 14 1 1.7991 0.4101 2.4280 15 6 1.6831 2.1778 3.6183 16 1 2.3984 2.6063 4.3047 17 6 0.3319 2.3090 3.8596 18 7 -0.5391 1.7877 3.0235 19 14 -0.2614 3.2273 5.3743 20 1 -0.4331 4.6653 5.0457 21 1 -1.5610 2.6624 5.8182 22 1 0.7382 3.0841 6.4632 23 8 1.6631 2.0813 1.2216 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.0305 1.6903 -2.5008 30 1 2.0435 2.9008 -4.4045 31 1 -0.0953 4.0899 -4.1319 32 1 -1.2514 4.0616 -1.9580 33 1 -0.2689 2.8436 -0.0568 34 1 3.9264 2.4725 -0.1666 35 1 3.8578 0.9198 -1.0352 36 1 5.2591 0.7845 1.0354 37 1 3.8505 -0.3040 1.1041 38 1 4.0742 0.9077 3.2381 39 1 4.0565 2.4654 2.3757 40 1 -1.4897 1.8797 3.1935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310081313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:40 Heat of formation + Delta-G solvation = -34.284343 kcal Electronic energy + Delta-G solvation = -20707.264169 eV Core-core repulsion = 17872.267250 eV Total energy + Delta-G solvation = -2834.996919 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.74620 -37.74205 -33.61784 -32.69538 -31.96563 -30.58287 -30.03415 -28.71164 -25.71183 -23.79617 -22.60993 -22.03834 -21.32877 -20.29714 -17.99963 -16.85052 -16.26662 -15.32364 -14.76436 -14.47087 -14.39186 -14.24552 -13.82845 -13.30680 -12.96807 -12.82998 -12.51467 -12.20867 -12.00393 -11.82602 -11.55545 -11.10548 -11.02700 -10.90882 -10.62280 -10.51141 -10.40001 -10.31910 -10.21609 -9.96478 -9.68299 -9.45825 -8.81831 -8.46289 -8.42268 -8.22353 -7.72669 -6.01414 -4.12046 1.82507 1.91359 3.31125 3.37909 3.40481 4.27521 4.41883 4.87294 5.23092 5.32667 5.36381 5.48707 5.51509 5.61397 5.68360 5.82848 5.89968 5.92051 6.04107 6.12353 6.24677 6.31650 6.33257 6.40041 6.46036 6.56141 6.60711 6.68786 6.73868 6.85914 6.87860 6.88474 6.93435 6.99650 7.14492 7.29463 7.48964 7.53019 7.56664 7.93338 8.31285 8.79954 9.15181 9.57697 11.05215 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.019915 B = 0.008054 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.609356 B = 3475.524640 C = 4203.147064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.131 4.131 3 C 0.150 3.850 4 C -0.051 4.051 5 C -0.123 4.123 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.131 4.131 9 C -0.081 4.081 10 C -0.137 4.137 11 C -0.121 4.121 12 C -0.146 4.146 13 C 0.218 3.782 14 H 0.021 0.979 15 C -0.524 4.524 16 H 0.062 0.938 17 C 0.081 3.919 18 N -0.857 5.857 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 O -0.340 6.340 24 H 0.032 0.968 25 H 0.105 0.895 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -1.038 -9.694 10.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.109 3.891 4 C -0.051 4.051 5 C -0.141 4.141 6 C -0.151 4.151 7 C -0.151 4.151 8 C -0.149 4.149 9 C -0.099 4.099 10 C -0.175 4.175 11 C -0.159 4.159 12 C -0.183 4.183 13 C 0.163 3.837 14 H 0.038 0.962 15 C -0.561 4.561 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.493 5.493 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 O -0.259 6.259 24 H 0.051 0.949 25 H 0.124 0.876 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.044 -0.907 -9.715 10.221 hybrid contribution -0.134 0.304 0.645 0.725 sum 2.910 -0.603 -9.070 9.544 Atomic orbital electron populations 1.21923 0.95032 1.00226 1.04424 1.21955 0.97673 0.96462 1.00814 1.19969 0.90942 0.91234 0.86954 1.19770 0.94737 0.96866 0.93744 1.21006 0.99865 1.00370 0.92879 1.20942 0.96497 0.99349 0.98299 1.21013 0.96091 1.00639 0.97374 1.21174 1.00065 1.00292 0.93369 1.21345 0.94997 0.94221 0.99303 1.22192 0.96831 1.00790 0.97636 1.21651 0.98775 0.99467 0.95960 1.22275 1.01000 0.99640 0.95433 1.19732 0.86272 0.94276 0.83456 0.96155 1.21004 0.91894 1.38213 1.05018 0.92018 1.24994 0.96926 0.94592 0.95956 1.69916 1.01400 1.42717 1.35313 0.86659 0.78124 0.80227 0.83300 1.20618 1.21221 1.19926 1.88380 1.74459 1.52011 1.11026 0.94896 0.87635 0.93895 0.93624 0.91180 0.86468 0.86906 0.87033 0.86676 0.84050 0.91820 0.92506 0.93278 0.92430 0.92614 0.92638 0.93082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 9.05 37.16 0.34 -2.84 16 2 C -0.13 -2.52 4.32 -26.73 -0.12 -2.64 16 3 C 0.15 2.99 0.65 -91.73 -0.06 2.93 16 4 C -0.05 -0.96 4.12 -104.62 -0.43 -1.39 16 5 C -0.12 -1.99 9.14 -39.58 -0.36 -2.35 16 6 C -0.13 -1.92 10.05 -39.58 -0.40 -2.32 16 7 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 8 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 9 C -0.08 -1.56 7.49 -39.58 -0.30 -1.86 16 10 C -0.14 -2.42 4.13 -26.60 -0.11 -2.53 16 11 C -0.12 -2.13 5.72 -26.55 -0.15 -2.29 16 12 C -0.15 -3.05 5.35 -26.59 -0.14 -3.19 16 13 C 0.22 5.37 2.17 -27.84 -0.06 5.31 16 14 H 0.02 0.55 6.24 -51.93 -0.32 0.22 16 15 C -0.52 -14.25 8.80 -34.44 -0.30 -14.55 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 17 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 18 N -0.86 -23.43 11.76 55.43 0.65 -22.78 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 23 O -0.34 -8.25 7.79 -35.23 -0.27 -8.52 16 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.10 2.47 6.71 -51.93 -0.35 2.12 16 26 H 0.04 0.82 6.14 -51.93 -0.32 0.50 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.41 4.98 -51.93 -0.26 1.16 16 29 H 0.12 1.68 6.22 -52.49 -0.33 1.35 16 30 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.14 3.14 7.46 -52.49 -0.39 2.75 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.87 6.67 -51.93 -0.35 0.52 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 307.13 15.07 4.63 4.63 Total: -1.00 -27.70 307.13 -9.01 -36.71 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.01 Total: 4.58 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: -2.99 Total: -30.50 kcal Atomic # 7 Polarization: -23.43 SS G_CDS: 0.65 Total: -22.78 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.27 Total: -8.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.70 -9.01 -36.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310081313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.430 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds