Wall clock time and date at job start Mon Mar 30 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47364 * 2 1 4 4 C 1.50703 * 109.46892 * 240.00055 * 2 1 3 5 5 C 1.38238 * 120.00242 * 299.72655 * 4 2 1 6 6 C 1.38229 * 120.00330 * 179.74301 * 5 4 2 7 7 C 1.38239 * 119.99629 * 0.53111 * 6 5 4 8 8 C 1.38231 * 120.00135 * 359.74770 * 7 6 5 9 9 C 1.38231 * 119.99864 * 120.00342 * 4 2 1 10 10 C 1.53003 * 109.47157 * 120.00640 * 2 1 3 11 11 H 1.09002 * 109.48065 * 180.02562 * 10 2 1 12 12 C 1.53100 * 109.47879 * 300.04939 * 10 2 1 13 13 C 1.53311 * 109.19441 * 177.59162 * 12 10 2 14 14 C 1.53177 * 108.96735 * 303.05955 * 13 12 10 15 15 C 1.53098 * 109.21356 * 56.95427 * 14 13 12 16 16 H 1.09000 * 109.47836 * 182.37389 * 15 14 13 17 17 C 1.50701 * 109.47795 * 62.35161 * 15 14 13 18 18 H 1.07998 * 120.00524 * 0.02562 * 17 15 14 19 19 C 1.37874 * 119.99701 * 179.97438 * 17 15 14 20 20 N 1.31515 * 119.99997 * 0.02562 * 19 17 15 21 21 Si 1.86801 * 119.99985 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47004 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47212 * 120.00017 * 21 19 17 24 24 H 1.48500 * 109.47203 * 240.00434 * 21 19 17 25 25 O 1.42899 * 109.41440 * 302.35638 * 15 14 13 26 26 H 1.08996 * 109.47512 * 59.99698 * 1 2 3 27 27 H 1.08998 * 109.47364 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.47143 * 299.99585 * 1 2 3 29 29 H 1.08005 * 119.99736 * 359.97438 * 5 4 2 30 30 H 1.07997 * 120.00176 * 180.29357 * 6 5 4 31 31 H 1.08000 * 119.99693 * 179.76563 * 7 6 5 32 32 H 1.08003 * 120.00287 * 179.97438 * 8 7 6 33 33 H 1.08001 * 120.00376 * 359.97438 * 9 4 2 34 34 H 1.08992 * 109.52355 * 297.50318 * 12 10 2 35 35 H 1.08999 * 109.51737 * 57.62662 * 12 10 2 36 36 H 1.09001 * 109.62384 * 183.18541 * 13 12 10 37 37 H 1.09002 * 109.52711 * 62.87886 * 13 12 10 38 38 H 1.09002 * 109.52487 * 297.01638 * 14 13 12 39 39 H 1.09004 * 109.52023 * 176.89257 * 14 13 12 40 40 H 0.97005 * 120.00051 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 6 1.7029 -2.0355 -1.4465 6 6 2.1592 -2.6856 -2.5778 7 6 2.9540 -2.0138 -3.4877 8 6 3.2880 -0.6904 -3.2689 9 6 2.8270 -0.0386 -2.1404 10 6 2.0400 -0.7214 1.2492 11 1 3.1300 -0.7211 1.2496 12 6 1.5287 -0.0007 2.4994 13 6 1.9931 -0.7629 3.7459 14 6 1.4926 -2.2081 3.6610 15 6 2.0053 -2.8435 2.3659 16 1 1.6171 -3.8584 2.2805 17 6 3.5117 -2.8818 2.3870 18 1 4.0500 -2.4926 3.2385 19 6 4.2027 -3.4147 1.3196 20 7 3.5473 -3.8892 0.2828 21 14 6.0699 -3.4629 1.3459 22 1 6.5624 -2.8721 2.6162 23 1 6.5303 -4.8710 1.2443 24 1 6.6015 -2.6842 0.1986 25 8 1.5636 -2.0687 1.2494 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.0860 -2.5618 -0.7331 30 1 1.8980 -3.7195 -2.7489 31 1 3.3136 -2.5228 -4.3697 32 1 3.9093 -0.1656 -3.9796 33 1 3.0876 0.9954 -1.9697 34 1 1.9269 1.0136 2.5236 35 1 0.4395 0.0360 2.4788 36 1 1.5857 -0.2878 4.6384 37 1 3.0821 -0.7562 3.7925 38 1 0.4027 -2.2170 3.6645 39 1 1.8642 -2.7731 4.5159 40 1 4.0335 -4.2645 -0.4681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310230689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:44 Heat of formation + Delta-G solvation = -50.527377 kcal Electronic energy + Delta-G solvation = -20877.568350 eV Core-core repulsion = 18041.867080 eV Total energy + Delta-G solvation = -2835.701270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64377 -39.30393 -35.76775 -34.22731 -33.80298 -31.53027 -31.19515 -29.54369 -27.46873 -25.64925 -24.17256 -23.41381 -22.78563 -21.00962 -20.32426 -18.16310 -17.40572 -16.82021 -16.38264 -16.35635 -15.78987 -15.38636 -15.18000 -14.92634 -14.62844 -14.12210 -13.91987 -13.79679 -13.50351 -13.11955 -12.92708 -12.85573 -12.70471 -12.65474 -12.37848 -12.10763 -11.98861 -11.82531 -11.58696 -11.38321 -11.19392 -11.06971 -10.53882 -10.32356 -9.53186 -9.38795 -9.24384 -7.96917 -6.13370 0.72627 0.85772 1.34514 1.39774 1.46403 2.44488 3.12345 3.28301 3.69527 3.96280 4.09412 4.27374 4.33452 4.34289 4.37622 4.43063 4.56642 4.65394 4.72537 4.76158 4.87814 4.93114 5.00353 5.03616 5.10062 5.17603 5.24722 5.33816 5.36025 5.44534 5.47782 5.52275 5.55274 5.66224 5.79344 5.80561 5.90716 6.03309 6.13744 6.29041 6.45394 6.87471 7.30122 7.60158 9.04069 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014966 B = 0.011672 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.516981 B = 2398.366781 C = 3602.551659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 H 0.092 0.908 4 C -0.089 4.089 5 C -0.055 4.055 6 C -0.134 4.134 7 C -0.138 4.138 8 C -0.143 4.143 9 C -0.137 4.137 10 C 0.115 3.885 11 H 0.019 0.981 12 C -0.139 4.139 13 C -0.105 4.105 14 C -0.136 4.136 15 C 0.211 3.789 16 H 0.023 0.977 17 C -0.562 4.562 18 H 0.044 0.956 19 C 0.046 3.954 20 N -0.859 5.859 21 Si 0.923 3.077 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.289 1.289 25 O -0.372 6.372 26 H 0.059 0.941 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 8.669 -2.896 10.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.061 4.061 3 H 0.110 0.890 4 C -0.089 4.089 5 C -0.073 4.073 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.155 4.155 10 C 0.056 3.944 11 H 0.037 0.963 12 C -0.177 4.177 13 C -0.143 4.143 14 C -0.174 4.174 15 C 0.154 3.846 16 H 0.040 0.960 17 C -0.600 4.600 18 H 0.062 0.938 19 C -0.159 4.159 20 N -0.495 5.495 21 Si 0.750 3.250 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.216 1.216 25 O -0.291 6.291 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.313 8.501 -3.207 10.057 hybrid contribution 1.597 -0.680 0.273 1.757 sum -2.716 7.821 -2.934 8.784 Atomic orbital electron populations 1.21704 0.93303 1.01675 1.01818 1.20270 0.97158 0.97849 0.90836 0.88957 1.19957 0.98278 0.94690 0.95943 1.21016 0.98039 0.93642 0.94633 1.21166 0.99301 0.99321 0.95403 1.21267 0.99094 0.95376 0.99903 1.21235 1.01309 0.95133 0.98394 1.21260 0.98706 1.00450 0.95040 1.21522 0.96044 0.83909 0.92893 0.96250 1.22203 1.01405 0.98983 0.95091 1.21427 1.00153 0.95028 0.97682 1.22060 0.99043 0.97176 0.99073 1.19484 0.92367 0.89623 0.83080 0.95965 1.21641 0.93099 1.41892 1.03417 0.93756 1.25444 1.00125 0.94670 0.95618 1.70119 1.35167 1.38107 1.06146 0.86076 0.83950 0.77397 0.77552 1.19733 1.20928 1.21566 1.87811 1.72526 1.21315 1.47470 0.92234 0.93716 0.91097 0.86996 0.87358 0.85155 0.84439 0.85012 0.90709 0.90771 0.91216 0.93597 0.92866 0.92982 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.51 71.98 0.61 -3.25 16 2 C -0.04 -1.48 2.53 -11.54 -0.03 -1.51 16 3 H 0.09 2.74 7.88 -2.39 -0.02 2.72 16 4 C -0.09 -3.40 4.78 -19.87 -0.09 -3.50 16 5 C -0.06 -2.34 7.72 22.27 0.17 -2.17 16 6 C -0.13 -5.29 10.05 22.27 0.22 -5.06 16 7 C -0.14 -4.76 10.05 22.27 0.22 -4.54 16 8 C -0.14 -4.63 10.05 22.27 0.22 -4.40 16 9 C -0.14 -4.67 9.67 22.27 0.22 -4.46 16 10 C 0.11 4.68 2.09 30.63 0.06 4.75 16 11 H 0.02 0.95 7.09 -2.39 -0.02 0.94 16 12 C -0.14 -4.69 5.13 30.73 0.16 -4.53 16 13 C -0.11 -3.79 5.79 30.76 0.18 -3.61 16 14 C -0.14 -5.49 5.59 30.69 0.17 -5.32 16 15 C 0.21 10.42 3.16 29.88 0.09 10.52 16 16 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.56 -30.10 6.59 25.60 0.17 -29.93 16 18 H 0.04 2.40 6.87 -2.91 -0.02 2.38 16 19 C 0.05 2.51 5.40 84.65 0.46 2.97 16 20 N -0.86 -47.87 12.25 21.45 0.26 -47.61 16 21 Si 0.92 44.09 29.54 68.60 2.03 46.12 16 22 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 O -0.37 -17.49 6.06 -148.98 -0.90 -18.39 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.54 6.95 -2.39 -0.02 1.52 16 28 H 0.07 1.86 6.38 -2.38 -0.02 1.84 16 29 H 0.11 5.35 5.70 -2.91 -0.02 5.34 16 30 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.13 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 33 H 0.13 3.74 7.95 -2.91 -0.02 3.72 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.07 2.29 6.31 -2.39 -0.02 2.27 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 1.83 6.85 -2.39 -0.02 1.82 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -59.20 309.58 5.23 -53.97 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 1.00 Total: 19.96 kcal Atomic # 6 Polarization: -56.90 SS G_CDS: 2.84 Total: -54.06 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: 0.26 Total: -47.61 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.90 Total: -18.39 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.20 5.23 -53.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310230689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.442 kcal (2) G-P(sol) polarization free energy of solvation -59.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds