Wall clock time and date at job start Mon Mar 30 2020 06:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 C 1.38230 * 120.00132 * 299.72877 * 4 2 1 6 6 C 1.38233 * 120.00273 * 179.78369 * 5 4 2 7 7 C 1.38240 * 119.99799 * 0.44236 * 6 5 4 8 8 C 1.38237 * 119.99799 * 359.81291 * 7 6 5 9 9 C 1.38234 * 120.00079 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 11 11 H 1.09002 * 109.47747 * 59.97850 * 10 2 1 12 12 C 1.53093 * 109.48305 * 299.94877 * 10 2 1 13 13 C 1.53179 * 109.16694 * 182.40820 * 12 10 2 14 14 C 1.53171 * 109.03777 * 56.97202 * 13 12 10 15 15 C 1.53095 * 109.16530 * 303.02459 * 14 13 12 16 16 H 1.08992 * 109.47983 * 297.62169 * 15 14 13 17 17 C 1.50707 * 109.48774 * 177.59711 * 15 14 13 18 18 H 1.08000 * 120.00028 * 0.04835 * 17 15 14 19 19 C 1.37878 * 119.99981 * 180.02562 * 17 15 14 20 20 N 1.31517 * 119.99665 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00308 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46721 * 89.99685 * 21 19 17 23 23 H 1.48498 * 109.47280 * 209.99424 * 21 19 17 24 24 H 1.48499 * 109.47051 * 329.99864 * 21 19 17 25 25 O 1.42898 * 109.48588 * 180.02562 * 10 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08005 * 119.99878 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.00099 * 180.27439 * 6 5 4 31 31 H 1.08004 * 119.99841 * 179.83203 * 7 6 5 32 32 H 1.08001 * 119.99610 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.99454 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.51898 * 302.30817 * 12 10 2 35 35 H 1.08999 * 109.52454 * 62.49344 * 12 10 2 36 36 H 1.09009 * 109.53647 * 297.10931 * 13 12 10 37 37 H 1.08997 * 109.54377 * 176.84945 * 13 12 10 38 38 H 1.09002 * 109.52120 * 183.11648 * 14 13 12 39 39 H 1.09002 * 109.57144 * 62.96294 * 14 13 12 40 40 H 0.96999 * 120.00018 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4463 6 6 2.1603 -2.6859 -2.5771 7 6 2.9543 -2.0138 -3.4876 8 6 3.2879 -0.6902 -3.2690 9 6 2.8271 -0.0386 -2.1403 10 6 2.0400 -0.7212 1.2493 11 1 1.6764 -1.7487 1.2496 12 6 1.5309 0.0011 2.4994 13 6 2.0946 -0.6906 3.7445 14 6 3.6240 -0.7007 3.6611 15 6 4.0522 -1.3960 2.3661 16 1 3.7150 -2.4323 2.3813 17 6 5.5542 -1.3579 2.2479 18 1 6.1447 -0.8860 3.0192 19 6 6.1743 -1.9259 1.1553 20 7 5.4551 -2.5014 0.2166 21 14 8.0359 -1.8781 1.0084 22 1 8.6143 -3.0850 1.6519 23 1 8.4187 -1.8505 -0.4262 24 1 8.5545 -0.6609 1.6826 25 8 3.4690 -0.7208 1.2498 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.0862 -2.5617 -0.7329 30 1 1.8993 -3.7199 -2.7480 31 1 3.3137 -2.5228 -4.3698 32 1 3.9079 -0.1651 -3.9805 33 1 3.0881 0.9954 -1.9694 34 1 1.8604 1.0400 2.4794 35 1 0.4419 -0.0361 2.5235 36 1 1.7252 -1.7151 3.7910 37 1 1.7815 -0.1479 4.6364 38 1 4.0318 -1.2400 4.5161 39 1 3.9967 0.3236 3.6651 40 1 5.8913 -2.9007 -0.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310230693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:53 Heat of formation + Delta-G solvation = -41.787222 kcal Electronic energy + Delta-G solvation = -20346.075997 eV Core-core repulsion = 17510.753729 eV Total energy + Delta-G solvation = -2835.322269 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.17696 -37.79330 -34.44236 -32.60607 -32.14458 -30.26896 -29.77767 -28.37657 -25.41584 -24.22947 -22.59723 -22.01147 -21.26525 -19.42396 -19.13079 -16.48337 -16.26835 -15.31128 -14.81663 -14.63282 -14.32419 -14.08938 -13.63701 -13.38927 -13.01117 -12.74147 -12.56085 -12.48159 -12.10574 -11.80830 -11.65412 -11.19476 -11.10801 -10.91198 -10.77540 -10.59068 -10.41364 -10.28606 -10.16399 -10.11033 -9.71350 -9.41925 -8.77573 -8.39894 -8.21921 -7.95941 -7.75991 -5.90995 -4.03466 2.06864 2.09832 3.34234 3.41450 3.44575 4.45435 4.48097 4.89641 5.14893 5.39270 5.51291 5.55063 5.56782 5.61825 5.68983 5.70883 5.74742 5.87519 6.04604 6.06943 6.12735 6.15195 6.22967 6.30746 6.35158 6.43639 6.47550 6.62129 6.69073 6.71448 6.84640 6.91320 6.93737 6.97349 7.11481 7.12915 7.33678 7.59097 7.68574 7.97589 8.37427 8.87149 9.23899 9.65927 11.15080 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.010185 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.252682 B = 2748.415703 C = 4316.930858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.046 4.046 3 H 0.076 0.924 4 C -0.041 4.041 5 C -0.101 4.101 6 C -0.116 4.116 7 C -0.130 4.130 8 C -0.120 4.120 9 C -0.105 4.105 10 C 0.095 3.905 11 H 0.039 0.961 12 C -0.147 4.147 13 C -0.120 4.120 14 C -0.144 4.144 15 C 0.222 3.778 16 H 0.010 0.990 17 C -0.530 4.530 18 H 0.061 0.939 19 C 0.081 3.919 20 N -0.847 5.847 21 Si 0.885 3.115 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 O -0.346 6.346 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.655 2.923 -2.948 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.064 4.064 3 H 0.095 0.905 4 C -0.041 4.041 5 C -0.119 4.119 6 C -0.134 4.134 7 C -0.148 4.148 8 C -0.138 4.138 9 C -0.123 4.123 10 C 0.036 3.964 11 H 0.057 0.943 12 C -0.185 4.185 13 C -0.158 4.158 14 C -0.182 4.182 15 C 0.167 3.833 16 H 0.027 0.973 17 C -0.568 4.568 18 H 0.079 0.921 19 C -0.126 4.126 20 N -0.482 5.482 21 Si 0.713 3.287 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 O -0.265 6.265 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.543 2.912 -3.265 10.498 hybrid contribution 1.063 -0.184 0.160 1.090 sum -8.480 2.728 -3.105 9.434 Atomic orbital electron populations 1.21853 0.94651 1.01876 1.01429 1.20141 0.94446 0.99418 0.92397 0.90540 1.19531 0.96273 0.94002 0.94332 1.20753 1.00358 0.94131 0.96671 1.20910 0.98593 0.98921 0.94968 1.20897 0.99483 0.94859 0.99542 1.20929 0.99978 0.95070 0.97836 1.20873 0.97533 0.99677 0.94261 1.21776 0.87222 0.96239 0.91178 0.94317 1.22263 0.99258 1.00414 0.96567 1.21606 0.97727 0.99694 0.96736 1.22266 0.93212 1.01506 1.01236 1.19628 0.92800 0.90173 0.80722 0.97256 1.20938 0.89683 1.38771 1.07362 0.92128 1.25027 0.97645 0.94349 0.95531 1.70042 1.34674 1.34449 1.09015 0.86728 0.86381 0.78367 0.77249 1.20716 1.21189 1.19876 1.88373 1.13057 1.77214 1.47828 0.92629 0.92711 0.92274 0.87164 0.87119 0.87243 0.87157 0.87005 0.91982 0.92488 0.92852 0.93333 0.92719 0.92639 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.66 37.16 0.32 -1.60 16 2 C -0.05 -0.80 2.37 -91.78 -0.22 -1.01 16 3 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 4 C -0.04 -0.78 4.43 -104.63 -0.46 -1.25 16 5 C -0.10 -1.88 8.71 -39.59 -0.34 -2.22 16 6 C -0.12 -2.04 10.05 -39.58 -0.40 -2.43 16 7 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 8 C -0.12 -2.11 10.05 -39.58 -0.40 -2.51 16 9 C -0.11 -1.98 9.67 -39.58 -0.38 -2.36 16 10 C 0.10 1.92 2.04 -26.68 -0.05 1.86 16 11 H 0.04 0.82 7.37 -51.93 -0.38 0.44 16 12 C -0.15 -2.55 4.99 -26.59 -0.13 -2.69 16 13 C -0.12 -2.16 6.03 -26.55 -0.16 -2.32 16 14 C -0.14 -3.12 5.36 -26.59 -0.14 -3.26 16 15 C 0.22 5.79 2.50 -27.83 -0.07 5.73 16 16 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 17 C -0.53 -15.11 8.80 -34.44 -0.30 -15.41 16 18 H 0.06 1.69 7.74 -52.49 -0.41 1.29 16 19 C 0.08 2.33 5.40 -17.82 -0.10 2.23 16 20 N -0.85 -24.97 12.84 55.43 0.71 -24.26 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 O -0.35 -8.83 9.06 -35.23 -0.32 -9.15 16 26 H 0.05 0.73 7.41 -51.93 -0.38 0.35 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.72 6.49 -51.93 -0.34 0.39 16 29 H 0.11 1.92 7.10 -52.48 -0.37 1.55 16 30 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.11 1.95 7.95 -52.49 -0.42 1.53 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.83 6.57 -51.93 -0.34 0.49 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 319.84 15.07 4.82 4.82 Total: -1.00 -30.75 319.84 -9.46 -40.21 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.41 Total: 1.50 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -3.24 Total: -29.86 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.71 Total: -24.26 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.32 Total: -9.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.75 -9.46 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310230693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.580 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds