Wall clock time and date at job start Mon Mar 30 2020 06:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 C 1.38230 * 120.00132 * 299.72877 * 4 2 1 6 6 C 1.38233 * 120.00273 * 179.78369 * 5 4 2 7 7 C 1.38240 * 119.99799 * 0.44236 * 6 5 4 8 8 C 1.38237 * 119.99799 * 359.81291 * 7 6 5 9 9 C 1.38234 * 120.00079 * 359.97438 * 8 7 6 10 10 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 11 11 H 1.09002 * 109.47747 * 59.97850 * 10 2 1 12 12 C 1.53093 * 109.48305 * 299.94877 * 10 2 1 13 13 C 1.53179 * 109.16694 * 182.40820 * 12 10 2 14 14 C 1.53171 * 109.03777 * 56.97202 * 13 12 10 15 15 C 1.53095 * 109.16530 * 303.02459 * 14 13 12 16 16 H 1.08992 * 109.47983 * 297.62169 * 15 14 13 17 17 C 1.50707 * 109.48774 * 177.59711 * 15 14 13 18 18 H 1.08000 * 120.00028 * 0.04835 * 17 15 14 19 19 C 1.37878 * 119.99981 * 180.02562 * 17 15 14 20 20 N 1.31517 * 119.99665 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00308 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46721 * 89.99685 * 21 19 17 23 23 H 1.48498 * 109.47280 * 209.99424 * 21 19 17 24 24 H 1.48499 * 109.47051 * 329.99864 * 21 19 17 25 25 O 1.42898 * 109.48588 * 180.02562 * 10 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08005 * 119.99878 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.00099 * 180.27439 * 6 5 4 31 31 H 1.08004 * 119.99841 * 179.83203 * 7 6 5 32 32 H 1.08001 * 119.99610 * 180.02562 * 8 7 6 33 33 H 1.08000 * 119.99454 * 179.97438 * 9 8 7 34 34 H 1.08999 * 109.51898 * 302.30817 * 12 10 2 35 35 H 1.08999 * 109.52454 * 62.49344 * 12 10 2 36 36 H 1.09009 * 109.53647 * 297.10931 * 13 12 10 37 37 H 1.08997 * 109.54377 * 176.84945 * 13 12 10 38 38 H 1.09002 * 109.52120 * 183.11648 * 14 13 12 39 39 H 1.09002 * 109.57144 * 62.96294 * 14 13 12 40 40 H 0.96999 * 120.00018 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4463 6 6 2.1603 -2.6859 -2.5771 7 6 2.9543 -2.0138 -3.4876 8 6 3.2879 -0.6902 -3.2690 9 6 2.8271 -0.0386 -2.1403 10 6 2.0400 -0.7212 1.2493 11 1 1.6764 -1.7487 1.2496 12 6 1.5309 0.0011 2.4994 13 6 2.0946 -0.6906 3.7445 14 6 3.6240 -0.7007 3.6611 15 6 4.0522 -1.3960 2.3661 16 1 3.7150 -2.4323 2.3813 17 6 5.5542 -1.3579 2.2479 18 1 6.1447 -0.8860 3.0192 19 6 6.1743 -1.9259 1.1553 20 7 5.4551 -2.5014 0.2166 21 14 8.0359 -1.8781 1.0084 22 1 8.6143 -3.0850 1.6519 23 1 8.4187 -1.8505 -0.4262 24 1 8.5545 -0.6609 1.6826 25 8 3.4690 -0.7208 1.2498 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.0862 -2.5617 -0.7329 30 1 1.8993 -3.7199 -2.7480 31 1 3.3137 -2.5228 -4.3698 32 1 3.9079 -0.1651 -3.9805 33 1 3.0881 0.9954 -1.9694 34 1 1.8604 1.0400 2.4794 35 1 0.4419 -0.0361 2.5235 36 1 1.7252 -1.7151 3.7910 37 1 1.7815 -0.1479 4.6364 38 1 4.0318 -1.2400 4.5161 39 1 3.9967 0.3236 3.6651 40 1 5.8913 -2.9007 -0.5523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310230693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:52 Heat of formation + Delta-G solvation = -57.554505 kcal Electronic energy + Delta-G solvation = -20346.759718 eV Core-core repulsion = 17510.753729 eV Total energy + Delta-G solvation = -2836.005989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65740 -39.37651 -35.98656 -34.44361 -34.00327 -31.65378 -31.40970 -29.82967 -27.28941 -25.65449 -24.23987 -23.48012 -22.87902 -20.97988 -20.65923 -18.57029 -17.65558 -16.95357 -16.63151 -16.15778 -16.11632 -15.52388 -15.16638 -14.87303 -14.60637 -14.28376 -14.10391 -13.92362 -13.61541 -13.29656 -13.01361 -12.84995 -12.77810 -12.54292 -12.41974 -12.28008 -12.09156 -11.80534 -11.70660 -11.63685 -11.43286 -11.06936 -10.78338 -10.44912 -9.64104 -9.59460 -9.34193 -8.07181 -6.27299 0.68171 0.69051 1.38566 1.40191 1.50087 2.42007 3.05260 3.07413 3.58888 3.79736 4.11179 4.14016 4.17115 4.22296 4.25853 4.35821 4.42009 4.53205 4.55285 4.63169 4.70855 4.78229 4.83221 4.91141 4.98485 5.02970 5.13182 5.15653 5.24879 5.30303 5.30702 5.33867 5.39099 5.42006 5.61103 5.73002 5.74718 5.82163 5.93083 6.27774 6.32258 6.72754 7.31916 7.48021 8.97778 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.010185 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.252682 B = 2748.415703 C = 4316.930858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.042 4.042 3 H 0.072 0.928 4 C -0.059 4.059 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.138 4.138 8 C -0.129 4.129 9 C -0.130 4.130 10 C 0.089 3.911 11 H 0.022 0.978 12 C -0.140 4.140 13 C -0.116 4.116 14 C -0.138 4.138 15 C 0.222 3.778 16 H -0.028 1.028 17 C -0.557 4.557 18 H 0.058 0.942 19 C 0.032 3.968 20 N -0.875 5.875 21 Si 0.950 3.050 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.269 1.269 25 O -0.375 6.375 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.131 0.869 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 3.629 -2.795 11.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.061 4.061 3 H 0.090 0.910 4 C -0.059 4.059 5 C -0.139 4.139 6 C -0.144 4.144 7 C -0.155 4.155 8 C -0.147 4.147 9 C -0.149 4.149 10 C 0.030 3.970 11 H 0.040 0.960 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.176 4.176 15 C 0.166 3.834 16 H -0.011 1.011 17 C -0.594 4.594 18 H 0.076 0.924 19 C -0.172 4.172 20 N -0.511 5.511 21 Si 0.775 3.225 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.193 1.193 25 O -0.295 6.295 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.131 0.869 30 H 0.149 0.851 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.275 3.623 -3.100 11.327 hybrid contribution 1.267 -0.432 0.093 1.342 sum -9.008 3.190 -3.007 10.018 Atomic orbital electron populations 1.21804 0.91403 1.02580 1.03104 1.20175 0.97014 0.98355 0.90526 0.91001 1.19813 0.96583 0.94458 0.95012 1.20955 1.01127 0.94389 0.97402 1.21270 0.98400 1.00028 0.94748 1.21269 0.99053 0.94872 1.00354 1.21281 0.99916 0.95592 0.97912 1.21137 0.98265 1.00289 0.95161 1.22033 0.84505 0.96301 0.94155 0.95988 1.22220 1.01374 0.99753 0.94443 1.21599 0.94666 1.00509 0.98570 1.22124 0.96299 1.00419 0.98800 1.19423 0.91935 0.88893 0.83126 1.01083 1.21347 0.91556 1.38965 1.07556 0.92393 1.25795 1.02197 0.93962 0.95206 1.70185 1.36302 1.35223 1.09352 0.85711 0.80898 0.78717 0.77184 1.19705 1.20998 1.19331 1.88258 1.16463 1.76830 1.47922 0.92390 0.91366 0.90254 0.86870 0.85097 0.84569 0.85005 0.86607 0.91769 0.88795 0.92798 0.89922 0.92483 0.93116 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.66 71.98 0.62 -2.69 16 2 C -0.04 -1.45 2.37 -11.54 -0.03 -1.48 16 3 H 0.07 2.50 7.88 -2.39 -0.02 2.48 16 4 C -0.06 -2.24 4.43 -19.87 -0.09 -2.33 16 5 C -0.12 -4.53 8.71 22.27 0.19 -4.34 16 6 C -0.13 -4.41 10.05 22.27 0.22 -4.19 16 7 C -0.14 -4.60 10.05 22.27 0.22 -4.37 16 8 C -0.13 -4.49 10.05 22.27 0.22 -4.26 16 9 C -0.13 -4.93 9.67 22.27 0.22 -4.72 16 10 C 0.09 3.56 2.04 30.63 0.06 3.62 16 11 H 0.02 0.95 7.37 -2.39 -0.02 0.93 16 12 C -0.14 -4.55 4.99 30.69 0.15 -4.40 16 13 C -0.12 -3.93 6.03 30.71 0.19 -3.75 16 14 C -0.14 -5.95 5.36 30.68 0.16 -5.79 16 15 C 0.22 11.90 2.50 29.88 0.07 11.97 16 16 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 17 C -0.56 -32.48 8.80 25.60 0.23 -32.26 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 19 C 0.03 1.88 5.40 84.65 0.46 2.34 16 20 N -0.87 -52.86 12.84 21.45 0.28 -52.58 16 21 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 25 O -0.38 -19.60 9.06 -148.98 -1.35 -20.95 16 26 H 0.06 1.43 7.41 -2.39 -0.02 1.41 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.66 6.49 -2.38 -0.02 1.64 16 29 H 0.11 4.02 7.10 -2.91 -0.02 4.00 16 30 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.12 4.11 7.95 -2.91 -0.02 4.08 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 2.38 6.57 -2.39 -0.02 2.36 16 36 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.78 319.84 4.85 -62.93 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.99 Total: 19.99 kcal Atomic # 6 Polarization: -59.54 SS G_CDS: 2.91 Total: -56.63 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.28 Total: -52.58 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.35 Total: -20.95 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -67.78 4.85 -62.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310230693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.373 kcal (2) G-P(sol) polarization free energy of solvation -67.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds