Wall clock time and date at job start Mon Mar 30 2020 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47396 * 2 1 4 4 C 1.53008 * 109.47007 * 240.00693 * 2 1 3 5 5 C 1.52999 * 109.47003 * 64.99713 * 4 2 1 6 6 H 1.08998 * 110.27773 * 52.91099 * 5 4 2 7 7 C 1.54947 * 110.30786 * 175.00050 * 5 4 2 8 8 C 1.55304 * 100.94189 * 155.45755 * 7 5 4 9 9 C 1.54376 * 102.25478 * 325.86567 * 8 7 5 10 10 H 1.09001 * 109.91043 * 261.80249 * 9 8 7 11 11 C 1.50704 * 109.83134 * 140.86761 * 9 8 7 12 12 H 1.07999 * 119.99759 * 0.41915 * 11 9 8 13 13 C 1.37875 * 119.99848 * 180.41764 * 11 9 8 14 14 N 1.31514 * 120.00482 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99610 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47213 * 59.99752 * 15 13 11 17 17 H 1.48502 * 109.46854 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47215 * 299.99479 * 15 13 11 19 19 O 1.43240 * 107.58688 * 21.35477 * 9 8 7 20 20 C 1.50700 * 109.47673 * 120.00389 * 2 1 3 21 21 C 1.38240 * 119.99509 * 59.72609 * 20 2 1 22 22 C 1.38233 * 119.99476 * 179.81603 * 21 20 2 23 23 C 1.38236 * 120.00020 * 0.39187 * 22 21 20 24 24 C 1.38230 * 120.00005 * 359.85982 * 23 22 21 25 25 C 1.38223 * 120.00147 * 359.95681 * 24 23 22 26 26 H 1.08998 * 109.46567 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46633 * 299.99316 * 1 2 3 28 28 H 1.08994 * 109.47212 * 59.99596 * 1 2 3 29 29 H 1.08997 * 109.47017 * 304.99766 * 4 2 1 30 30 H 1.08998 * 109.47026 * 184.99548 * 4 2 1 31 31 H 1.08995 * 111.12977 * 273.37994 * 7 5 4 32 32 H 1.09009 * 111.12280 * 37.53897 * 7 5 4 33 33 H 1.08992 * 110.84540 * 84.05954 * 8 7 5 34 34 H 1.09006 * 110.84658 * 207.67537 * 8 7 5 35 35 H 0.96994 * 120.00168 * 180.02562 * 14 13 11 36 36 H 1.08001 * 120.00080 * 0.02562 * 21 20 2 37 37 H 1.07999 * 120.00171 * 180.23566 * 22 21 20 38 38 H 1.08003 * 119.99766 * 179.83951 * 23 22 21 39 39 H 1.08004 * 119.99996 * 179.97438 * 24 23 22 40 40 H 1.08007 * 120.00011 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6351 0.0692 -2.4953 6 1 1.9564 1.1068 -2.4054 7 6 2.2483 -0.5756 -3.7639 8 6 1.2560 -0.0846 -4.8531 9 6 -0.0856 -0.0657 -4.0896 10 1 -0.6474 -0.9750 -4.3036 11 6 -0.8903 1.1407 -4.4997 12 1 -0.4976 1.8271 -5.2351 13 6 -2.1279 1.3679 -3.9359 14 7 -2.6064 0.5317 -3.0407 15 14 -3.1256 2.8630 -4.4448 16 1 -3.4013 2.8013 -5.9028 17 1 -4.4096 2.8784 -3.6989 18 1 -2.3594 4.0973 -4.1377 19 8 0.2136 0.0024 -2.6904 20 6 2.0325 -0.7105 1.2304 21 6 1.6939 -2.0323 1.4518 22 6 2.1579 -2.6851 2.5785 23 6 2.9538 -2.0138 3.4877 24 6 3.2880 -0.6905 3.2688 25 6 2.8272 -0.0388 2.1403 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.6054 -1.7197 -1.2954 30 1 3.1263 -0.7993 -1.2058 31 1 3.2538 -0.1982 -3.9497 32 1 2.2460 -1.6633 -3.6920 33 1 1.5209 0.9152 -5.1967 34 1 1.2178 -0.7853 -5.6872 35 1 -3.4771 0.6914 -2.6445 36 1 1.0696 -2.5559 0.7429 37 1 1.8965 -3.7190 2.7497 38 1 3.3142 -2.5231 4.3693 39 1 3.9095 -0.1658 3.9794 40 1 3.0880 0.9953 1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310309689.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:04 Heat of formation + Delta-G solvation = -55.235811 kcal Electronic energy + Delta-G solvation = -19575.041706 eV Core-core repulsion = 16739.136263 eV Total energy + Delta-G solvation = -2835.905443 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57690 -39.70844 -36.30888 -34.53718 -32.58763 -31.75777 -31.53692 -29.77887 -27.98070 -25.58942 -24.01584 -23.32060 -21.99453 -21.74491 -20.66237 -18.53513 -17.73845 -17.15015 -16.75346 -16.38014 -15.88406 -15.74317 -14.96751 -14.62805 -14.46482 -14.32684 -14.07425 -13.80179 -13.65900 -13.40437 -13.12474 -12.86406 -12.74407 -12.41988 -12.34888 -12.19641 -12.06429 -11.90407 -11.80745 -11.44764 -11.41389 -11.07418 -10.89001 -10.57932 -9.76180 -9.68894 -9.49793 -8.06530 -6.27227 0.53116 0.56164 1.40708 1.42351 1.49779 2.43426 2.94978 3.12183 3.60186 3.72428 3.90033 4.03396 4.16462 4.23871 4.30348 4.34571 4.43208 4.45098 4.58524 4.65121 4.69305 4.74158 4.77707 4.94770 5.01271 5.02218 5.08643 5.19317 5.21026 5.24010 5.26323 5.34263 5.46747 5.62419 5.66554 5.68129 5.77118 5.87090 5.95934 6.20075 6.27307 6.68267 7.15496 7.48974 8.98924 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.005000 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.658453 B = 5598.288414 C = 6161.546729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 H 0.072 0.928 4 C -0.092 4.092 5 C 0.066 3.934 6 H 0.044 0.956 7 C -0.140 4.140 8 C -0.139 4.139 9 C 0.195 3.805 10 H -0.002 1.002 11 C -0.565 4.565 12 H 0.056 0.944 13 C 0.030 3.970 14 N -0.895 5.895 15 Si 0.950 3.050 16 H -0.268 1.268 17 H -0.284 1.284 18 H -0.272 1.272 19 O -0.370 6.370 20 C -0.079 4.079 21 C -0.131 4.131 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.122 4.122 25 C -0.132 4.132 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.259 0.741 36 H 0.111 0.889 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.888 -3.861 10.117 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 H 0.090 0.910 4 C -0.130 4.130 5 C 0.008 3.992 6 H 0.062 0.938 7 C -0.177 4.177 8 C -0.177 4.177 9 C 0.139 3.861 10 H 0.016 0.984 11 C -0.602 4.602 12 H 0.074 0.926 13 C -0.172 4.172 14 N -0.532 5.532 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.210 1.210 18 H -0.197 1.197 19 O -0.290 6.290 20 C -0.079 4.079 21 C -0.149 4.149 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.150 4.150 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.582 -3.913 10.385 16.777 hybrid contribution -1.001 0.742 -0.624 1.394 sum 11.580 -3.171 9.761 15.474 Atomic orbital electron populations 1.21800 0.94853 1.00998 1.01271 1.20045 0.95390 0.98570 0.91947 0.90964 1.21689 1.00580 0.98502 0.92186 1.22958 0.84115 0.97285 0.94884 0.93763 1.23212 0.99321 1.00853 0.94311 1.23067 0.95322 1.00842 0.98428 1.20159 0.91962 0.94327 0.79639 0.98398 1.21767 1.02854 1.11224 1.24385 0.92606 1.25798 0.98453 0.98707 0.94292 1.70157 1.18146 1.37403 1.27504 0.85767 0.77884 0.80238 0.78591 1.19283 1.20978 1.19746 1.88725 1.19658 1.94741 1.25905 1.20009 0.97298 0.94517 0.96104 1.21142 1.00510 0.94735 0.98487 1.21403 0.98008 1.00753 0.94194 1.21451 0.98585 0.95032 0.99970 1.21435 0.99970 0.95260 0.97337 1.21302 0.98391 1.00476 0.94866 0.94419 0.94466 0.91385 0.92446 0.89580 0.88748 0.90672 0.91913 0.91095 0.93255 0.87065 0.84499 0.83698 0.83769 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.31 8.41 71.98 0.61 -4.71 16 2 C -0.04 -1.36 2.56 -11.54 -0.03 -1.39 16 3 H 0.07 2.32 7.88 -2.38 -0.02 2.30 16 4 C -0.09 -3.02 4.27 30.60 0.13 -2.89 16 5 C 0.07 2.56 3.32 31.26 0.10 2.66 16 6 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 7 C -0.14 -4.72 6.57 32.05 0.21 -4.51 16 8 C -0.14 -5.66 6.53 31.85 0.21 -5.45 16 9 C 0.19 10.23 3.36 30.32 0.10 10.33 16 10 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 11 C -0.56 -32.22 8.75 25.60 0.22 -31.99 16 12 H 0.06 3.09 7.52 -2.91 -0.02 3.07 16 13 C 0.03 1.71 5.41 84.65 0.46 2.17 16 14 N -0.89 -54.13 12.91 21.45 0.28 -53.85 16 15 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 O -0.37 -18.78 7.10 -148.98 -1.06 -19.84 16 20 C -0.08 -2.28 4.78 -19.87 -0.09 -2.37 16 21 C -0.13 -3.62 8.76 22.27 0.20 -3.43 16 22 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 23 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 24 C -0.12 -2.49 10.05 22.26 0.22 -2.26 16 25 C -0.13 -3.25 9.67 22.26 0.22 -3.03 16 26 H 0.04 1.53 7.37 -2.39 -0.02 1.52 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.07 3.36 5.46 -2.39 -0.01 3.35 16 29 H 0.06 1.98 7.58 -2.39 -0.02 1.96 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.07 2.39 8.06 -2.38 -0.02 2.37 16 33 H 0.06 2.54 7.66 -2.39 -0.02 2.53 16 34 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.11 3.25 7.16 -2.91 -0.02 3.22 16 37 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.13 2.80 7.95 -2.91 -0.02 2.78 16 Total: -1.00 -65.48 321.39 5.24 -60.25 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.99 Total: 18.64 kcal Atomic # 6 Polarization: -54.86 SS G_CDS: 3.00 Total: -51.86 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: 0.28 Total: -53.85 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.06 Total: -19.84 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -65.48 5.24 -60.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309689.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.010 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds