Wall clock time and date at job start Mon Mar 30 2020 06:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.53005 * 109.46924 * 240.00233 * 2 1 3 5 5 C 1.53003 * 109.47097 * 65.00216 * 4 2 1 6 6 H 1.09009 * 109.82144 * 305.87923 * 5 4 2 7 7 C 1.54382 * 109.82908 * 184.99997 * 5 4 2 8 8 C 1.55305 * 102.43395 * 218.93255 * 7 5 4 9 9 C 1.55503 * 100.69731 * 34.13038 * 8 7 5 10 10 H 1.09000 * 110.29205 * 82.50380 * 9 8 7 11 11 C 1.50696 * 110.36702 * 204.61043 * 9 8 7 12 12 H 1.08001 * 120.00328 * 357.24711 * 11 9 8 13 13 C 1.37885 * 119.99832 * 177.25002 * 11 9 8 14 14 N 1.31520 * 119.99868 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99772 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47226 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46994 * 120.00261 * 15 13 11 18 18 H 1.48507 * 109.47091 * 240.00061 * 15 13 11 19 19 O 1.43232 * 109.90984 * 66.81647 * 5 4 2 20 20 C 1.50695 * 109.47416 * 120.00290 * 2 1 3 21 21 C 1.38240 * 119.99781 * 59.72838 * 20 2 1 22 22 C 1.38236 * 119.99790 * 179.79175 * 21 20 2 23 23 C 1.38241 * 119.99801 * 0.44062 * 22 21 20 24 24 C 1.38232 * 119.99977 * 359.80711 * 23 22 21 25 25 C 1.38227 * 120.00113 * 240.00185 * 20 2 1 26 26 H 1.08995 * 109.47302 * 299.99452 * 1 2 3 27 27 H 1.08996 * 109.46913 * 60.00054 * 1 2 3 28 28 H 1.09010 * 109.46605 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47480 * 304.99943 * 4 2 1 30 30 H 1.08997 * 109.46901 * 184.99571 * 4 2 1 31 31 H 1.09002 * 110.84829 * 337.22559 * 7 5 4 32 32 H 1.09001 * 110.84937 * 100.64659 * 7 5 4 33 33 H 1.08999 * 111.12419 * 152.14904 * 8 7 5 34 34 H 1.08995 * 111.13053 * 276.31315 * 8 7 5 35 35 H 0.96991 * 119.99764 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00117 * 359.97438 * 21 20 2 37 37 H 1.07999 * 120.00385 * 180.27118 * 22 21 20 38 38 H 1.08000 * 119.99720 * 179.84274 * 23 22 21 39 39 H 1.08005 * 119.99782 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.00172 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0690 -2.4954 6 1 0.5588 0.2406 -2.4908 7 6 2.0353 -0.7134 -3.7646 8 6 2.5284 0.4146 -4.7114 9 6 3.1685 1.3929 -3.6860 10 1 4.1810 1.0731 -3.4397 11 6 3.1831 2.7952 -4.2375 12 1 2.8219 2.9861 -5.2373 13 6 3.6576 3.8346 -3.4657 14 7 4.0979 3.6021 -2.2484 15 14 3.6764 5.5728 -4.1497 16 1 3.1325 5.5669 -5.5315 17 1 2.8399 6.4509 -3.2927 18 1 5.0711 6.0824 -4.1682 19 8 2.3270 1.3229 -2.5238 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6853 2.5783 23 6 2.9537 -2.0137 3.4879 24 6 3.2880 -0.6904 3.2689 25 6 2.8271 -0.0387 2.1403 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6054 -1.7198 -1.2953 30 1 3.1263 -0.7994 -1.2057 31 1 2.8388 -1.4178 -3.5490 32 1 1.1742 -1.2284 -4.1905 33 1 3.2695 0.0393 -5.4170 34 1 1.6936 0.8826 -5.2331 35 1 4.4320 4.3332 -1.7057 36 1 1.0689 -2.5557 0.7434 37 1 1.8974 -3.7193 2.7492 38 1 3.3144 -2.5231 4.3692 39 1 3.9091 -0.1656 3.9797 40 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310309691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:08 Heat of formation + Delta-G solvation = -43.661808 kcal Electronic energy + Delta-G solvation = -19481.316201 eV Core-core repulsion = 16645.912644 eV Total energy + Delta-G solvation = -2835.403557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.38937 -38.14762 -35.02883 -32.53654 -30.87320 -30.71966 -30.10258 -28.46398 -26.27191 -24.12762 -22.75857 -22.23148 -20.43008 -20.27401 -19.06874 -16.64702 -16.53803 -15.62180 -15.17705 -14.76550 -14.64306 -14.18685 -13.61069 -13.56587 -13.17029 -13.05170 -12.55599 -12.41538 -12.20785 -11.98229 -11.67033 -11.51405 -11.07251 -10.98478 -10.88754 -10.57806 -10.51481 -10.41536 -10.25699 -10.12947 -9.81177 -9.59218 -9.02666 -8.74398 -8.54809 -8.43419 -7.79661 -5.96926 -4.09451 1.55913 1.58227 3.31565 3.39481 3.43049 3.97993 4.45106 4.93771 4.99853 5.07511 5.12968 5.27650 5.40574 5.46861 5.59545 5.60855 5.66414 5.71717 5.76851 5.83962 5.92970 6.07118 6.12454 6.23292 6.26154 6.28584 6.37854 6.44957 6.61597 6.63638 6.64377 6.67071 6.70813 6.75905 6.82358 6.99464 7.07944 7.21683 7.63439 7.92669 8.31483 8.69311 9.09179 9.61167 11.10402 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.005250 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.339299 B = 5332.024131 C = 6094.738376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.053 4.053 3 H 0.095 0.905 4 C -0.111 4.111 5 C 0.072 3.928 6 H 0.059 0.941 7 C -0.153 4.153 8 C -0.148 4.148 9 C 0.211 3.789 10 H 0.025 0.975 11 C -0.534 4.534 12 H 0.062 0.938 13 C 0.078 3.922 14 N -0.862 5.862 15 Si 0.889 3.111 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 O -0.351 6.351 20 C -0.061 4.061 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.135 4.135 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.259 0.741 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -11.023 7.561 14.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 H 0.113 0.887 4 C -0.149 4.149 5 C 0.013 3.987 6 H 0.077 0.923 7 C -0.191 4.191 8 C -0.186 4.186 9 C 0.156 3.844 10 H 0.042 0.958 11 C -0.572 4.572 12 H 0.080 0.920 13 C -0.127 4.127 14 N -0.498 5.498 15 Si 0.716 3.284 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 O -0.271 6.271 20 C -0.061 4.061 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.138 4.138 25 C -0.132 4.132 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.559 -10.786 7.873 14.111 hybrid contribution 0.106 0.691 -0.373 0.793 sum -4.453 -10.095 7.500 13.341 Atomic orbital electron populations 1.21854 0.94955 1.01055 1.01887 1.20160 0.95303 1.00725 0.90965 0.88687 1.21966 1.01241 0.97429 0.94274 1.22575 0.96479 0.87257 0.92375 0.92290 1.23130 1.00366 0.98546 0.97066 1.23410 1.00352 0.96175 0.98674 1.20591 0.89503 0.93849 0.80431 0.95780 1.21155 1.43622 0.92143 1.00251 0.91999 1.25056 0.94048 0.98985 0.94627 1.70053 1.39815 1.31676 1.08283 0.86610 0.77637 0.84885 0.79246 1.19687 1.20883 1.20953 1.88819 1.60017 1.30942 1.47293 1.20101 0.96113 0.93979 0.95924 1.21002 1.00561 0.94586 0.97547 1.21072 0.98670 0.99507 0.94993 1.21050 0.99691 0.95020 0.99546 1.21131 1.00077 0.94924 0.97715 1.21239 0.97513 1.00436 0.94032 0.93170 0.91726 0.93289 0.92618 0.91809 0.91874 0.92158 0.92181 0.91737 0.93115 0.86386 0.86628 0.86695 0.86421 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.77 37.16 0.33 -1.72 16 2 C -0.05 -0.89 2.52 -91.77 -0.23 -1.12 16 3 H 0.09 1.90 7.51 -51.93 -0.39 1.51 16 4 C -0.11 -1.92 4.00 -26.73 -0.11 -2.03 16 5 C 0.07 1.42 3.38 -26.01 -0.09 1.33 16 6 H 0.06 1.11 6.34 -51.92 -0.33 0.79 16 7 C -0.15 -2.75 6.53 -24.78 -0.16 -2.92 16 8 C -0.15 -3.11 6.58 -24.18 -0.16 -3.27 16 9 C 0.21 5.50 3.27 -26.55 -0.09 5.41 16 10 H 0.02 0.69 8.14 -51.93 -0.42 0.26 16 11 C -0.53 -15.12 8.82 -34.44 -0.30 -15.43 16 12 H 0.06 1.71 7.77 -52.49 -0.41 1.30 16 13 C 0.08 2.24 5.42 -17.81 -0.10 2.14 16 14 N -0.86 -25.62 12.93 55.43 0.72 -24.90 16 15 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 O -0.35 -8.99 9.78 -35.23 -0.34 -9.34 16 20 C -0.06 -0.94 4.78 -104.63 -0.50 -1.44 16 21 C -0.12 -1.61 8.76 -39.58 -0.35 -1.95 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.14 -1.63 10.05 -39.58 -0.40 -2.03 16 24 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 25 C -0.11 -1.74 9.67 -39.59 -0.38 -2.12 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.98 6.45 -51.93 -0.33 0.65 16 28 H 0.05 0.62 7.37 -51.92 -0.38 0.24 16 29 H 0.06 0.82 7.59 -51.93 -0.39 0.43 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.07 7.85 -51.93 -0.41 0.66 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 1.42 7.16 -52.48 -0.38 1.05 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.93 7.95 -52.49 -0.42 1.51 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -30.45 323.45 -9.48 -39.93 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.38 Total: 2.00 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -3.33 Total: -29.03 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.72 Total: -24.90 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.34 Total: -9.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.45 -9.48 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.736 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds