Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47103 * 2 1 4 4 C 1.53005 * 109.46924 * 240.00233 * 2 1 3 5 5 C 1.53003 * 109.47097 * 65.00216 * 4 2 1 6 6 H 1.09009 * 109.82144 * 305.87923 * 5 4 2 7 7 C 1.54382 * 109.82908 * 184.99997 * 5 4 2 8 8 C 1.55305 * 102.43395 * 218.93255 * 7 5 4 9 9 C 1.55503 * 100.69731 * 34.13038 * 8 7 5 10 10 H 1.09000 * 110.29205 * 82.50380 * 9 8 7 11 11 C 1.50696 * 110.36702 * 204.61043 * 9 8 7 12 12 H 1.08001 * 120.00328 * 357.24711 * 11 9 8 13 13 C 1.37885 * 119.99832 * 177.25002 * 11 9 8 14 14 N 1.31520 * 119.99868 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 119.99772 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47226 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46994 * 120.00261 * 15 13 11 18 18 H 1.48507 * 109.47091 * 240.00061 * 15 13 11 19 19 O 1.43232 * 109.90984 * 66.81647 * 5 4 2 20 20 C 1.50695 * 109.47416 * 120.00290 * 2 1 3 21 21 C 1.38240 * 119.99781 * 59.72838 * 20 2 1 22 22 C 1.38236 * 119.99790 * 179.79175 * 21 20 2 23 23 C 1.38241 * 119.99801 * 0.44062 * 22 21 20 24 24 C 1.38232 * 119.99977 * 359.80711 * 23 22 21 25 25 C 1.38227 * 120.00113 * 240.00185 * 20 2 1 26 26 H 1.08995 * 109.47302 * 299.99452 * 1 2 3 27 27 H 1.08996 * 109.46913 * 60.00054 * 1 2 3 28 28 H 1.09010 * 109.46605 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47480 * 304.99943 * 4 2 1 30 30 H 1.08997 * 109.46901 * 184.99571 * 4 2 1 31 31 H 1.09002 * 110.84829 * 337.22559 * 7 5 4 32 32 H 1.09001 * 110.84937 * 100.64659 * 7 5 4 33 33 H 1.08999 * 111.12419 * 152.14904 * 8 7 5 34 34 H 1.08995 * 111.13053 * 276.31315 * 8 7 5 35 35 H 0.96991 * 119.99764 * 179.97438 * 14 13 11 36 36 H 1.08003 * 120.00117 * 359.97438 * 21 20 2 37 37 H 1.07999 * 120.00385 * 180.27118 * 22 21 20 38 38 H 1.08000 * 119.99720 * 179.84274 * 23 22 21 39 39 H 1.08005 * 119.99782 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.00172 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6353 0.0690 -2.4954 6 1 0.5588 0.2406 -2.4908 7 6 2.0353 -0.7134 -3.7646 8 6 2.5284 0.4146 -4.7114 9 6 3.1685 1.3929 -3.6860 10 1 4.1810 1.0731 -3.4397 11 6 3.1831 2.7952 -4.2375 12 1 2.8219 2.9861 -5.2373 13 6 3.6576 3.8346 -3.4657 14 7 4.0979 3.6021 -2.2484 15 14 3.6764 5.5728 -4.1497 16 1 3.1325 5.5669 -5.5315 17 1 2.8399 6.4509 -3.2927 18 1 5.0711 6.0824 -4.1682 19 8 2.3270 1.3229 -2.5238 20 6 2.0324 -0.7104 1.2304 21 6 1.6938 -2.0323 1.4519 22 6 2.1582 -2.6853 2.5783 23 6 2.9537 -2.0137 3.4879 24 6 3.2880 -0.6904 3.2689 25 6 2.8271 -0.0387 2.1403 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.6054 -1.7198 -1.2953 30 1 3.1263 -0.7994 -1.2057 31 1 2.8388 -1.4178 -3.5490 32 1 1.1742 -1.2284 -4.1905 33 1 3.2695 0.0393 -5.4170 34 1 1.6936 0.8826 -5.2331 35 1 4.4320 4.3332 -1.7057 36 1 1.0689 -2.5557 0.7434 37 1 1.8974 -3.7193 2.7492 38 1 3.3144 -2.5231 4.3692 39 1 3.9091 -0.1656 3.9797 40 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310309691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -59.588353 kcal Electronic energy + Delta-G solvation = -19482.006827 eV Core-core repulsion = 16645.912644 eV Total energy + Delta-G solvation = -2836.094184 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.60513 -39.72887 -36.37780 -34.61395 -32.59848 -31.76670 -31.53568 -29.86548 -27.97999 -25.75601 -24.06855 -23.36052 -22.18485 -21.72802 -20.46240 -18.61598 -17.70082 -17.29310 -16.76895 -16.22132 -16.06772 -15.71156 -15.02278 -14.76495 -14.71065 -14.19361 -14.15310 -13.87434 -13.68660 -13.48489 -13.20151 -12.86604 -12.74770 -12.38421 -12.33713 -12.23660 -12.17266 -12.00823 -11.80832 -11.54052 -11.31910 -11.18770 -10.92936 -10.69532 -9.78346 -9.73713 -9.50906 -8.13722 -6.34600 0.51626 0.54002 1.38782 1.39969 1.52479 2.40504 2.93154 3.07621 3.60473 3.74911 3.95156 3.96192 4.13676 4.20545 4.28289 4.32433 4.33185 4.39312 4.56758 4.62730 4.67736 4.69811 4.76992 4.86100 4.89559 4.97632 5.08264 5.15324 5.16514 5.17903 5.24223 5.30895 5.40586 5.49139 5.62740 5.64894 5.65497 5.76486 5.87546 6.18655 6.20448 6.63198 7.12159 7.41973 8.94121 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022716 B = 0.005250 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.339299 B = 5332.024131 C = 6094.738376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 H 0.043 0.957 4 C -0.100 4.100 5 C 0.059 3.941 6 H 0.071 0.929 7 C -0.140 4.140 8 C -0.141 4.141 9 C 0.202 3.798 10 H -0.015 1.015 11 C -0.557 4.557 12 H 0.064 0.936 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.960 3.040 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.276 1.276 19 O -0.387 6.387 20 C -0.080 4.080 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.921 -13.284 7.641 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.067 4.067 3 H 0.062 0.938 4 C -0.138 4.138 5 C 0.001 3.999 6 H 0.088 0.912 7 C -0.178 4.178 8 C -0.179 4.179 9 C 0.146 3.854 10 H 0.003 0.997 11 C -0.594 4.594 12 H 0.082 0.918 13 C -0.179 4.179 14 N -0.539 5.539 15 Si 0.784 3.216 16 H -0.185 1.185 17 H -0.207 1.207 18 H -0.202 1.202 19 O -0.307 6.307 20 C -0.080 4.080 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.163 4.163 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.864 -13.056 7.940 16.368 hybrid contribution 0.521 1.336 -0.333 1.472 sum -5.343 -11.721 7.608 14.960 Atomic orbital electron populations 1.21794 0.93074 1.02695 1.01443 1.19990 0.96824 0.98016 0.91894 0.93844 1.21863 0.99668 0.98831 0.93410 1.22919 0.96547 0.85866 0.94592 0.91175 1.23106 1.02090 0.97556 0.95023 1.23285 1.00374 0.96028 0.98195 1.20468 0.88481 0.94273 0.82136 0.99734 1.21594 1.43514 0.93723 1.00564 0.91760 1.25956 0.93610 1.03505 0.94852 1.70208 1.41001 1.32942 1.09749 0.85499 0.77896 0.79292 0.78862 1.18460 1.20716 1.20155 1.88737 1.60296 1.34389 1.47324 1.20031 0.97244 0.95203 0.95479 1.21209 1.00739 0.93487 0.98613 1.21495 0.97448 1.00938 0.93939 1.21459 0.98822 0.94310 1.00476 1.21364 1.00056 0.95893 0.97116 1.21261 0.99247 0.99974 0.95826 0.93029 0.92777 0.90438 0.88911 0.94540 0.90837 0.88326 0.90697 0.91651 0.93161 0.84467 0.83257 0.83553 0.84849 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.77 71.98 0.63 -3.16 16 2 C -0.05 -1.68 2.52 -11.54 -0.03 -1.71 16 3 H 0.04 1.92 7.51 -2.39 -0.02 1.90 16 4 C -0.10 -3.45 4.00 30.60 0.12 -3.33 16 5 C 0.06 2.32 3.38 31.06 0.10 2.42 16 6 H 0.07 2.59 6.34 -2.38 -0.02 2.58 16 7 C -0.14 -4.76 6.53 31.86 0.21 -4.56 16 8 C -0.14 -5.84 6.58 32.25 0.21 -5.63 16 9 C 0.20 10.93 3.27 30.71 0.10 11.03 16 10 H -0.01 -0.90 8.14 -2.39 -0.02 -0.91 16 11 C -0.56 -32.49 8.82 25.60 0.23 -32.26 16 12 H 0.06 3.60 7.77 -2.91 -0.02 3.58 16 13 C 0.02 1.32 5.42 84.66 0.46 1.78 16 14 N -0.90 -56.29 12.93 21.45 0.28 -56.01 16 15 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 O -0.39 -20.78 9.78 -148.98 -1.46 -22.24 16 20 C -0.08 -2.47 4.78 -19.87 -0.09 -2.56 16 21 C -0.12 -3.02 8.76 22.27 0.20 -2.83 16 22 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 23 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 24 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.14 -4.65 9.67 22.27 0.22 -4.43 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.63 6.45 -2.39 -0.02 1.62 16 28 H 0.08 1.76 7.37 -2.38 -0.02 1.74 16 29 H 0.09 2.49 7.59 -2.39 -0.02 2.47 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.34 7.85 -2.39 -0.02 2.32 16 32 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.06 2.67 8.06 -2.39 -0.02 2.65 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.14 2.78 7.16 -2.91 -0.02 2.76 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.10 3.56 7.95 -2.91 -0.02 3.54 16 Total: -1.00 -70.14 323.45 4.86 -65.28 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.99 Total: 18.93 kcal Atomic # 6 Polarization: -56.21 SS G_CDS: 3.02 Total: -53.19 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.01 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.46 Total: -22.24 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.14 4.86 -65.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.687 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds