Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.52992 * 109.47401 * 239.99061 * 2 1 3 5 5 C 1.53000 * 109.46766 * 65.00347 * 4 2 1 6 6 H 1.09001 * 110.33729 * 55.79589 * 5 4 2 7 7 C 1.54480 * 110.37293 * 178.16422 * 5 4 2 8 8 C 1.54504 * 104.06359 * 142.80955 * 7 5 4 9 9 C 1.54475 * 104.06716 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.37258 * 94.84905 * 9 8 7 11 11 C 1.50692 * 110.37593 * 217.19003 * 9 8 7 12 12 H 1.08001 * 120.00482 * 356.83570 * 11 9 8 13 13 C 1.37882 * 120.00286 * 176.82928 * 11 9 8 14 14 N 1.31517 * 119.99715 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00355 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46891 * 60.00274 * 15 13 11 17 17 H 1.48504 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47062 * 300.00258 * 15 13 11 19 19 O 1.44425 * 110.37532 * 293.54410 * 5 4 2 20 20 C 1.50706 * 109.46714 * 119.99398 * 2 1 3 21 21 C 1.38238 * 119.99776 * 240.00083 * 20 2 1 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00160 * 59.98300 * 20 2 1 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47507 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46992 * 60.00725 * 1 2 3 29 29 H 1.08999 * 109.47269 * 185.00030 * 4 2 1 30 30 H 1.08998 * 109.47716 * 305.00538 * 4 2 1 31 31 H 1.09002 * 110.51393 * 261.45269 * 7 5 4 32 32 H 1.09002 * 110.51074 * 24.16441 * 7 5 4 33 33 H 1.09005 * 110.51543 * 241.35424 * 8 7 5 34 34 H 1.09002 * 110.51438 * 118.64845 * 8 7 5 35 35 H 0.96999 * 120.00220 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00103 * 359.97438 * 21 20 2 37 37 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 40 40 H 1.08000 * 120.00005 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2490 5 6 1.6353 0.0687 -2.4952 6 1 2.0005 1.0936 -2.4291 7 6 2.1799 -0.6177 -3.7675 8 6 1.0583 -0.4178 -4.8112 9 6 -0.0315 0.3651 -4.0460 10 1 0.0781 1.4356 -4.2192 11 6 -1.4027 -0.0979 -4.4659 12 1 -1.5075 -0.8396 -5.2439 13 6 -2.5236 0.4253 -3.8569 14 7 -2.3960 1.3288 -2.9097 15 14 -4.2233 -0.1491 -4.3769 16 1 -4.3420 -1.6120 -4.1508 17 1 -5.2524 0.5612 -3.5759 18 1 -4.4266 0.1472 -5.8178 19 8 0.2000 0.0558 -2.6546 20 6 2.0322 -0.7103 1.2306 21 6 2.8269 -0.0384 2.1405 22 6 3.2872 -0.6898 3.2696 23 6 2.9532 -2.0132 3.4885 24 6 2.1635 -2.6868 2.5756 25 6 1.6980 -2.0336 1.4497 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 3.1263 -0.7996 -1.2053 30 1 1.6054 -1.7199 -1.2950 31 1 3.0996 -0.1351 -4.0981 32 1 2.3483 -1.6793 -3.5864 33 1 0.6722 -1.3806 -5.1462 34 1 1.4235 0.1636 -5.6578 35 1 -3.1846 1.6972 -2.4815 36 1 3.0882 0.9955 1.9693 37 1 3.9084 -0.1650 3.9802 38 1 3.3132 -2.5222 4.3704 39 1 1.9062 -3.7221 2.7443 40 1 1.0765 -2.5584 0.7392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310309693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -40.949812 kcal Electronic energy + Delta-G solvation = -19578.690019 eV Core-core repulsion = 16743.404063 eV Total energy + Delta-G solvation = -2835.285956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40509 -38.15347 -34.93414 -32.54609 -30.88296 -30.77969 -30.14245 -28.30811 -26.24207 -23.86344 -22.76763 -22.25591 -20.61951 -19.79583 -19.44519 -16.70437 -16.58355 -15.51994 -15.01904 -14.85426 -14.51639 -14.21729 -13.81270 -13.29788 -13.23039 -12.84607 -12.82220 -12.50308 -11.99717 -11.86851 -11.53729 -11.34605 -11.07090 -10.97126 -10.87474 -10.60765 -10.47612 -10.39296 -10.06246 -9.97437 -9.60495 -9.51271 -9.03945 -8.79064 -8.52891 -8.45946 -8.02028 -5.99337 -4.10728 1.52491 1.53357 3.33426 3.38196 3.40556 3.94128 4.44014 4.90268 4.99205 5.05001 5.09667 5.25321 5.38369 5.45960 5.61093 5.67078 5.70077 5.75681 5.88907 5.91932 5.95352 6.12097 6.21335 6.24700 6.32418 6.47651 6.57019 6.57720 6.60464 6.65763 6.67395 6.73422 6.81791 6.86957 6.90758 7.03855 7.15852 7.53232 7.65882 7.91079 8.29412 8.57832 9.00056 9.59090 11.08341 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.005109 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.669308 B = 5478.891996 C = 6080.605218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 H 0.070 0.930 4 C -0.097 4.097 5 C 0.064 3.936 6 H 0.047 0.953 7 C -0.149 4.149 8 C -0.147 4.147 9 C 0.203 3.797 10 H 0.023 0.977 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.079 3.921 14 N -0.863 5.863 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 O -0.337 6.337 20 C -0.062 4.062 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.136 4.136 24 C -0.121 4.121 25 C -0.113 4.113 26 H 0.045 0.955 27 H 0.033 0.967 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.261 0.739 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.585 -3.933 8.694 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.067 4.067 3 H 0.089 0.911 4 C -0.135 4.135 5 C 0.005 3.995 6 H 0.065 0.935 7 C -0.187 4.187 8 C -0.184 4.184 9 C 0.147 3.853 10 H 0.040 0.960 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.126 4.126 14 N -0.499 5.499 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.202 1.202 19 O -0.256 6.256 20 C -0.062 4.062 21 C -0.141 4.141 22 C -0.141 4.141 23 C -0.154 4.154 24 C -0.139 4.139 25 C -0.131 4.131 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.136 0.864 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.323 -3.854 8.984 14.217 hybrid contribution -0.687 -0.305 -0.278 0.801 sum 9.636 -4.159 8.707 13.636 Atomic orbital electron populations 1.22101 0.92270 1.02321 1.03931 1.20182 0.97835 0.98055 0.90601 0.91141 1.21666 0.99171 0.99582 0.93062 1.22756 0.87155 0.96583 0.92964 0.93508 1.22941 0.98338 1.00415 0.97022 1.23030 0.96383 1.01382 0.97654 1.20499 0.92814 0.93679 0.78260 0.95965 1.20991 0.89677 1.25298 1.20722 0.92077 1.25027 0.99045 0.94246 0.94328 1.69999 1.29504 1.26927 1.23506 0.86723 0.83958 0.79073 0.78570 1.20154 1.21217 1.20217 1.89477 1.15498 1.91213 1.29436 1.20191 0.95586 0.94140 0.96246 1.21111 0.98553 0.99851 0.94633 1.21078 1.00361 0.94992 0.97620 1.21047 0.99836 0.95011 0.99496 1.21127 0.98292 0.99689 0.94797 1.21103 0.99825 0.94624 0.97584 0.93580 0.94797 0.86397 0.92246 0.91440 0.92627 0.92106 0.91938 0.93027 0.92939 0.86324 0.86570 0.86682 0.86474 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.41 37.16 0.31 -2.59 16 2 C -0.05 -0.80 2.56 -91.77 -0.24 -1.03 16 3 H 0.07 1.14 7.88 -51.93 -0.41 0.73 16 4 C -0.10 -1.63 4.18 -26.73 -0.11 -1.74 16 5 C 0.06 1.26 3.23 -25.95 -0.08 1.17 16 6 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.15 -2.69 6.63 -25.16 -0.17 -2.86 16 8 C -0.15 -3.06 6.62 -25.17 -0.17 -3.23 16 9 C 0.20 5.16 3.11 -27.11 -0.08 5.07 16 10 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 11 C -0.53 -14.70 8.78 -34.44 -0.30 -15.01 16 12 H 0.06 1.66 7.59 -52.49 -0.40 1.26 16 13 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 14 N -0.86 -24.89 12.94 55.43 0.72 -24.17 16 15 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 O -0.34 -8.24 7.26 -35.23 -0.26 -8.49 16 20 C -0.06 -0.92 4.78 -104.62 -0.50 -1.42 16 21 C -0.12 -1.65 9.67 -39.58 -0.38 -2.03 16 22 C -0.12 -1.46 10.05 -39.58 -0.40 -1.85 16 23 C -0.14 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 25 C -0.11 -1.63 8.76 -39.58 -0.35 -1.97 16 26 H 0.05 0.89 7.39 -51.93 -0.38 0.51 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.12 2.77 5.30 -51.93 -0.28 2.50 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.17 7.57 -51.93 -0.39 0.78 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 33 H 0.06 1.32 7.72 -51.93 -0.40 0.92 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.12 1.42 7.95 -52.48 -0.42 1.00 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.77 7.16 -52.49 -0.38 1.39 16 LS Contribution 321.11 15.07 4.84 4.84 Total: -1.00 -29.03 321.11 -9.48 -38.51 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.40 Total: 2.35 kcal Atomic # 6 Polarization: -25.91 SS G_CDS: -3.36 Total: -29.27 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.72 Total: -24.17 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.26 Total: -8.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.03 -9.48 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.440 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds