Wall clock time and date at job start Mon Mar 30 2020 06:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47119 * 2 1 4 4 C 1.52992 * 109.47401 * 239.99061 * 2 1 3 5 5 C 1.53000 * 109.46766 * 65.00347 * 4 2 1 6 6 H 1.09001 * 110.33729 * 55.79589 * 5 4 2 7 7 C 1.54480 * 110.37293 * 178.16422 * 5 4 2 8 8 C 1.54504 * 104.06359 * 142.80955 * 7 5 4 9 9 C 1.54475 * 104.06716 * 359.97438 * 8 7 5 10 10 H 1.08997 * 110.37258 * 94.84905 * 9 8 7 11 11 C 1.50692 * 110.37593 * 217.19003 * 9 8 7 12 12 H 1.08001 * 120.00482 * 356.83570 * 11 9 8 13 13 C 1.37882 * 120.00286 * 176.82928 * 11 9 8 14 14 N 1.31517 * 119.99715 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00355 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46891 * 60.00274 * 15 13 11 17 17 H 1.48504 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47062 * 300.00258 * 15 13 11 19 19 O 1.44425 * 110.37532 * 293.54410 * 5 4 2 20 20 C 1.50706 * 109.46714 * 119.99398 * 2 1 3 21 21 C 1.38238 * 119.99776 * 240.00083 * 20 2 1 22 22 C 1.38234 * 119.99693 * 179.97438 * 21 20 2 23 23 C 1.38234 * 120.00240 * 0.02562 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.26327 * 23 22 21 25 25 C 1.38234 * 120.00160 * 59.98300 * 20 2 1 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47507 * 300.00508 * 1 2 3 28 28 H 1.09002 * 109.46992 * 60.00725 * 1 2 3 29 29 H 1.08999 * 109.47269 * 185.00030 * 4 2 1 30 30 H 1.08998 * 109.47716 * 305.00538 * 4 2 1 31 31 H 1.09002 * 110.51393 * 261.45269 * 7 5 4 32 32 H 1.09002 * 110.51074 * 24.16441 * 7 5 4 33 33 H 1.09005 * 110.51543 * 241.35424 * 8 7 5 34 34 H 1.09002 * 110.51438 * 118.64845 * 8 7 5 35 35 H 0.96999 * 120.00220 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00103 * 359.97438 * 21 20 2 37 37 H 1.07999 * 119.99751 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.99744 * 179.97438 * 23 22 21 39 39 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 40 40 H 1.08000 * 120.00005 * 359.97438 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2490 5 6 1.6353 0.0687 -2.4952 6 1 2.0005 1.0936 -2.4291 7 6 2.1799 -0.6177 -3.7675 8 6 1.0583 -0.4178 -4.8112 9 6 -0.0315 0.3651 -4.0460 10 1 0.0781 1.4356 -4.2192 11 6 -1.4027 -0.0979 -4.4659 12 1 -1.5075 -0.8396 -5.2439 13 6 -2.5236 0.4253 -3.8569 14 7 -2.3960 1.3288 -2.9097 15 14 -4.2233 -0.1491 -4.3769 16 1 -4.3420 -1.6120 -4.1508 17 1 -5.2524 0.5612 -3.5759 18 1 -4.4266 0.1472 -5.8178 19 8 0.2000 0.0558 -2.6546 20 6 2.0322 -0.7103 1.2306 21 6 2.8269 -0.0384 2.1405 22 6 3.2872 -0.6898 3.2696 23 6 2.9532 -2.0132 3.4885 24 6 2.1635 -2.6868 2.5756 25 6 1.6980 -2.0336 1.4497 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 3.1263 -0.7996 -1.2053 30 1 1.6054 -1.7199 -1.2950 31 1 3.0996 -0.1351 -4.0981 32 1 2.3483 -1.6793 -3.5864 33 1 0.6722 -1.3806 -5.1462 34 1 1.4235 0.1636 -5.6578 35 1 -3.1846 1.6972 -2.4815 36 1 3.0882 0.9955 1.9693 37 1 3.9084 -0.1650 3.9802 38 1 3.3132 -2.5222 4.3704 39 1 1.9062 -3.7221 2.7443 40 1 1.0765 -2.5584 0.7392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310309693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:10 Heat of formation + Delta-G solvation = -54.832109 kcal Electronic energy + Delta-G solvation = -19579.292001 eV Core-core repulsion = 16743.404063 eV Total energy + Delta-G solvation = -2835.887937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58538 -39.70062 -36.29886 -34.57664 -32.58415 -31.76201 -31.53750 -29.78427 -28.03070 -25.54141 -24.01129 -23.34723 -22.29306 -21.37758 -20.75055 -18.65220 -17.75801 -17.00338 -16.48786 -16.36094 -16.00655 -15.71400 -15.36464 -14.52336 -14.48675 -14.20092 -14.14883 -14.03893 -13.73176 -13.34642 -13.09872 -12.85660 -12.77889 -12.45035 -12.31379 -12.16695 -11.97473 -11.91947 -11.72537 -11.46591 -11.28528 -11.04230 -10.93127 -10.58516 -9.91674 -9.76179 -9.50878 -8.11379 -6.30239 0.52645 0.55647 1.41233 1.43424 1.50691 2.42526 2.94494 3.10027 3.65666 3.72575 3.90054 4.12774 4.15296 4.23126 4.28584 4.32757 4.41743 4.43934 4.56955 4.59927 4.68882 4.74043 4.77172 4.96940 4.99937 5.05443 5.07676 5.18973 5.20505 5.25092 5.25986 5.33073 5.45235 5.56000 5.63894 5.67058 5.77073 5.85886 5.93872 6.19327 6.26443 6.60808 6.99627 7.43720 8.95953 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.024846 B = 0.005109 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.669308 B = 5478.891996 C = 6080.605218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.040 4.040 3 H 0.071 0.929 4 C -0.087 4.087 5 C 0.054 3.946 6 H 0.044 0.956 7 C -0.138 4.138 8 C -0.141 4.141 9 C 0.194 3.806 10 H -0.012 1.012 11 C -0.553 4.553 12 H 0.061 0.939 13 C 0.029 3.971 14 N -0.894 5.894 15 Si 0.954 3.046 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.266 1.266 19 O -0.361 6.361 20 C -0.080 4.080 21 C -0.133 4.133 22 C -0.122 4.122 23 C -0.133 4.133 24 C -0.125 4.125 25 C -0.131 4.131 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.260 0.740 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.200 -5.122 9.854 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 H 0.090 0.910 4 C -0.124 4.124 5 C -0.004 4.004 6 H 0.062 0.938 7 C -0.176 4.176 8 C -0.179 4.179 9 C 0.138 3.862 10 H 0.006 0.994 11 C -0.591 4.591 12 H 0.079 0.921 13 C -0.174 4.174 14 N -0.531 5.531 15 Si 0.779 3.221 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.191 1.191 19 O -0.280 6.280 20 C -0.080 4.080 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.143 4.143 25 C -0.149 4.149 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.155 0.845 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.949 -5.048 10.134 16.461 hybrid contribution -1.137 0.082 -0.570 1.275 sum 10.812 -4.967 9.564 15.265 Atomic orbital electron populations 1.21911 0.94912 1.00946 1.01856 1.20026 0.95430 0.98513 0.91913 0.91049 1.21593 1.00622 0.98450 0.91742 1.23036 0.84828 0.97308 0.95250 0.93775 1.22907 0.98280 1.01507 0.94904 1.22917 0.96009 1.00507 0.98459 1.20383 0.93651 0.92372 0.79828 0.99393 1.21394 0.91377 1.25310 1.20982 0.92117 1.25830 1.02906 0.94318 0.94315 1.70140 1.30344 1.28080 1.24574 0.85693 0.79239 0.78544 0.78601 1.19775 1.20861 1.19101 1.89450 1.18798 1.91171 1.28611 1.20014 0.97297 0.94523 0.96125 1.21306 0.98378 1.00475 0.94892 1.21439 0.99949 0.95278 0.97320 1.21453 0.98620 0.95011 0.99950 1.21402 0.98028 1.00741 0.94160 1.21141 1.00528 0.94692 0.98529 0.94549 0.94603 0.90492 0.89494 0.92279 0.89590 0.90633 0.92392 0.91523 0.93088 0.85331 0.83755 0.83678 0.84484 0.87047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.41 71.98 0.61 -5.05 16 2 C -0.04 -1.34 2.56 -11.54 -0.03 -1.37 16 3 H 0.07 2.32 7.88 -2.39 -0.02 2.30 16 4 C -0.09 -2.85 4.18 30.59 0.13 -2.73 16 5 C 0.05 2.12 3.23 31.10 0.10 2.22 16 6 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.14 -4.77 6.63 31.61 0.21 -4.56 16 8 C -0.14 -5.86 6.62 31.61 0.21 -5.66 16 9 C 0.19 10.19 3.11 30.35 0.09 10.28 16 10 H -0.01 -0.67 8.14 -2.39 -0.02 -0.68 16 11 C -0.55 -31.64 8.78 25.60 0.22 -31.42 16 12 H 0.06 3.36 7.59 -2.91 -0.02 3.34 16 13 C 0.03 1.65 5.42 84.66 0.46 2.11 16 14 N -0.89 -53.62 12.94 21.45 0.28 -53.34 16 15 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 16 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 O -0.36 -18.31 7.26 -148.98 -1.08 -19.40 16 20 C -0.08 -2.30 4.78 -19.86 -0.09 -2.40 16 21 C -0.13 -3.28 9.67 22.27 0.22 -3.06 16 22 C -0.12 -2.50 10.05 22.27 0.22 -2.28 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.39 16 24 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 25 C -0.13 -3.64 8.76 22.27 0.20 -3.45 16 26 H 0.04 1.48 7.39 -2.39 -0.02 1.46 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 3.83 5.30 -2.39 -0.01 3.82 16 29 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.06 2.04 7.57 -2.39 -0.02 2.02 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.39 7.87 -2.39 -0.02 2.37 16 33 H 0.06 2.43 7.72 -2.38 -0.02 2.41 16 34 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.13 2.83 7.95 -2.91 -0.02 2.80 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 40 H 0.11 3.25 7.16 -2.91 -0.02 3.23 16 Total: -1.00 -64.91 321.11 5.20 -59.71 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.99 Total: 18.90 kcal Atomic # 6 Polarization: -55.36 SS G_CDS: 2.99 Total: -52.37 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.28 Total: -53.34 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.08 Total: -19.40 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.91 5.20 -59.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.873 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds