Wall clock time and date at job start Mon Mar 30 2020 06:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46860 * 2 1 4 4 C 1.53003 * 109.47115 * 240.00123 * 2 1 3 5 5 C 1.52998 * 109.46979 * 64.99965 * 4 2 1 6 6 H 1.08994 * 110.55733 * 307.87921 * 5 4 2 7 7 C 1.54992 * 110.61962 * 184.99689 * 5 4 2 8 8 C 1.54808 * 102.09663 * 204.31761 * 7 5 4 9 9 C 1.54103 * 104.18578 * 20.88343 * 8 7 5 10 10 H 1.09002 * 109.87915 * 242.60324 * 9 8 7 11 11 C 1.50698 * 109.87783 * 121.60033 * 9 8 7 12 12 H 1.07999 * 120.00087 * 0.31105 * 11 9 8 13 13 C 1.37883 * 119.99913 * 180.30135 * 11 9 8 14 14 N 1.31512 * 119.99645 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00110 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46824 * 60.00398 * 15 13 11 17 17 H 1.48496 * 109.47036 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47287 * 300.00839 * 15 13 11 19 19 O 1.43750 * 107.41924 * 2.10301 * 9 8 7 20 20 C 1.50696 * 109.47005 * 120.00190 * 2 1 3 21 21 C 1.38236 * 120.00050 * 59.72828 * 20 2 1 22 22 C 1.38236 * 120.00182 * 179.78789 * 21 20 2 23 23 C 1.38237 * 119.99775 * 0.46091 * 22 21 20 24 24 C 1.38234 * 119.99740 * 359.77129 * 23 22 21 25 25 C 1.38231 * 120.00567 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47089 * 59.99708 * 1 2 3 27 27 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47503 * 299.99904 * 1 2 3 29 29 H 1.09000 * 109.47133 * 305.00306 * 4 2 1 30 30 H 1.08994 * 109.46860 * 185.00098 * 4 2 1 31 31 H 1.09007 * 110.90687 * 86.11902 * 7 5 4 32 32 H 1.09004 * 110.94169 * 322.53371 * 7 5 4 33 33 H 1.08992 * 110.49201 * 262.20655 * 8 7 5 34 34 H 1.09007 * 110.48703 * 139.55607 * 8 7 5 35 35 H 0.97004 * 119.99535 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99936 * 359.97438 * 21 20 2 37 37 H 1.08000 * 119.99952 * 180.24953 * 22 21 20 38 38 H 1.07992 * 120.00148 * 179.79063 * 23 22 21 39 39 H 1.08011 * 119.99935 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00373 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0690 -2.4953 6 1 0.5655 0.2779 -2.4853 7 6 2.0289 -0.7008 -3.7816 8 6 2.1444 0.4410 -4.8205 9 6 2.3473 1.7084 -3.9677 10 1 1.5154 2.3958 -4.1215 11 6 3.6426 2.3791 -4.3465 12 1 4.2640 1.9547 -5.1211 13 6 4.0342 3.5346 -3.7043 14 7 3.2775 4.0512 -2.7608 15 14 5.6401 4.3655 -4.1733 16 1 5.5987 4.7486 -5.6074 17 1 5.8302 5.5806 -3.3411 18 1 6.7683 3.4275 -3.9439 19 8 2.3939 1.2978 -2.5909 20 6 2.0323 -0.7104 1.2304 21 6 1.6937 -2.0322 1.4520 22 6 2.1580 -2.6853 2.5784 23 6 2.9531 -2.0136 3.4881 24 6 3.2878 -0.6904 3.2690 25 6 2.8269 -0.0386 2.1405 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1262 -0.7994 -1.2056 31 1 1.2494 -1.4079 -4.0658 32 1 2.9848 -1.2091 -3.6543 33 1 1.2286 0.5180 -5.4064 34 1 3.0029 0.2784 -5.4724 35 1 3.5533 4.8639 -2.3087 36 1 1.0688 -2.5557 0.7435 37 1 1.8968 -3.7191 2.7494 38 1 3.3131 -2.5227 4.3699 39 1 3.9087 -0.1655 3.9800 40 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310309695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:13 Heat of formation + Delta-G solvation = -42.845311 kcal Electronic energy + Delta-G solvation = -19424.912414 eV Core-core repulsion = 16589.544263 eV Total energy + Delta-G solvation = -2835.368151 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.41577 -38.09371 -35.12434 -32.52069 -30.83761 -30.75197 -30.15635 -28.51973 -26.27205 -24.08198 -22.80282 -22.30729 -20.61551 -19.89133 -19.26459 -16.77063 -16.66367 -15.45747 -15.21138 -14.74035 -14.46982 -14.01602 -13.80074 -13.64377 -13.39330 -13.04403 -12.77894 -12.35383 -12.21607 -11.88641 -11.74318 -11.49686 -11.11913 -10.99221 -10.88052 -10.65137 -10.57420 -10.38857 -10.27605 -9.98589 -9.77898 -9.56743 -9.08059 -8.78729 -8.53191 -8.47356 -7.90140 -5.96083 -4.08344 1.51459 1.53699 3.34411 3.38854 3.41346 3.93447 4.45798 4.89284 4.93701 5.05725 5.08579 5.23893 5.36813 5.46308 5.56525 5.61357 5.68108 5.70402 5.77399 5.79303 5.88186 6.02899 6.09695 6.18594 6.22565 6.26945 6.39831 6.42476 6.57175 6.61130 6.63816 6.69526 6.70532 6.75617 6.86245 6.95199 7.02403 7.16837 7.60418 7.92566 8.31015 8.61400 9.05735 9.61817 11.11358 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.005296 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.050482 B = 5285.334223 C = 6079.801425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 H 0.093 0.907 4 C -0.095 4.095 5 C 0.063 3.937 6 H 0.051 0.949 7 C -0.148 4.148 8 C -0.146 4.146 9 C 0.204 3.796 10 H 0.023 0.977 11 C -0.533 4.533 12 H 0.060 0.940 13 C 0.078 3.922 14 N -0.864 5.864 15 Si 0.889 3.111 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.276 1.276 19 O -0.346 6.346 20 C -0.062 4.062 21 C -0.118 4.118 22 C -0.123 4.123 23 C -0.134 4.134 24 C -0.120 4.120 25 C -0.115 4.115 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.260 0.740 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 -11.404 8.723 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.073 4.073 3 H 0.111 0.889 4 C -0.132 4.132 5 C 0.004 3.996 6 H 0.069 0.931 7 C -0.185 4.185 8 C -0.184 4.184 9 C 0.148 3.852 10 H 0.041 0.959 11 C -0.570 4.570 12 H 0.078 0.922 13 C -0.128 4.128 14 N -0.500 5.500 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 O -0.265 6.265 20 C -0.062 4.062 21 C -0.136 4.136 22 C -0.141 4.141 23 C -0.152 4.152 24 C -0.138 4.138 25 C -0.133 4.133 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.167 -11.133 9.021 14.923 hybrid contribution 0.835 0.338 -0.354 0.968 sum -3.332 -10.796 8.667 14.240 Atomic orbital electron populations 1.21862 0.94788 1.01186 1.01971 1.20195 0.95512 1.00563 0.91074 0.88883 1.21567 1.01571 0.97210 0.92894 1.23028 0.95574 0.88011 0.92955 0.93104 1.23081 1.00687 0.97959 0.96814 1.23043 1.00293 0.96627 0.98464 1.20238 0.97086 0.89726 0.78117 0.95899 1.21156 1.06823 1.08413 1.20648 0.92184 1.25060 0.96675 0.96692 0.94330 1.70029 1.36953 1.20162 1.22869 0.86728 0.84311 0.78876 0.78438 1.20161 1.21203 1.20147 1.89341 1.71310 1.36263 1.29618 1.20077 0.96190 0.94019 0.95898 1.21006 1.00505 0.94544 0.97565 1.21081 0.98577 0.99547 0.94945 1.21057 0.99627 0.95006 0.99541 1.21129 1.00076 0.94939 0.97688 1.21220 0.97640 1.00351 0.94120 0.91728 0.93161 0.93057 0.92083 0.91373 0.92544 0.91622 0.93313 0.91656 0.93000 0.86301 0.86563 0.86654 0.86408 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.78 37.16 0.33 -1.67 16 2 C -0.06 -0.89 2.54 -91.77 -0.23 -1.12 16 3 H 0.09 1.79 7.69 -51.93 -0.40 1.39 16 4 C -0.09 -1.60 4.19 -26.73 -0.11 -1.72 16 5 C 0.06 1.24 3.16 -25.68 -0.08 1.16 16 6 H 0.05 0.97 6.32 -51.93 -0.33 0.64 16 7 C -0.15 -2.73 6.59 -24.73 -0.16 -2.89 16 8 C -0.15 -3.10 6.63 -25.20 -0.17 -3.27 16 9 C 0.20 5.35 3.24 -27.31 -0.09 5.26 16 10 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 11 C -0.53 -15.19 8.78 -34.44 -0.30 -15.50 16 12 H 0.06 1.66 7.33 -52.49 -0.38 1.28 16 13 C 0.08 2.24 5.41 -17.82 -0.10 2.14 16 14 N -0.86 -25.86 12.93 55.43 0.72 -25.14 16 15 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 O -0.35 -8.95 10.21 -35.23 -0.36 -9.30 16 20 C -0.06 -0.91 4.78 -104.63 -0.50 -1.41 16 21 C -0.12 -1.54 8.76 -39.58 -0.35 -1.89 16 22 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.13 -1.56 10.05 -39.58 -0.40 -1.96 16 24 C -0.12 -1.52 10.05 -39.59 -0.40 -1.92 16 25 C -0.12 -1.68 9.67 -39.58 -0.38 -2.06 16 26 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 27 H 0.05 0.62 7.37 -51.93 -0.38 0.23 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.07 1.21 8.06 -51.93 -0.42 0.79 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.38 7.40 -51.92 -0.38 1.00 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.12 1.38 7.16 -52.49 -0.38 1.00 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.12 1.81 7.95 -52.49 -0.42 1.39 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -30.80 323.17 -9.47 -40.27 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.34 Total: 1.37 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: -3.34 Total: -28.69 kcal Atomic # 7 Polarization: -25.86 SS G_CDS: 0.72 Total: -25.14 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.36 Total: -9.30 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.80 -9.47 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.572 kcal (2) G-P(sol) polarization free energy of solvation -30.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds