Wall clock time and date at job start Mon Mar 30 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46860 * 2 1 4 4 C 1.53003 * 109.47115 * 240.00123 * 2 1 3 5 5 C 1.52998 * 109.46979 * 64.99965 * 4 2 1 6 6 H 1.08994 * 110.55733 * 307.87921 * 5 4 2 7 7 C 1.54992 * 110.61962 * 184.99689 * 5 4 2 8 8 C 1.54808 * 102.09663 * 204.31761 * 7 5 4 9 9 C 1.54103 * 104.18578 * 20.88343 * 8 7 5 10 10 H 1.09002 * 109.87915 * 242.60324 * 9 8 7 11 11 C 1.50698 * 109.87783 * 121.60033 * 9 8 7 12 12 H 1.07999 * 120.00087 * 0.31105 * 11 9 8 13 13 C 1.37883 * 119.99913 * 180.30135 * 11 9 8 14 14 N 1.31512 * 119.99645 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00110 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46824 * 60.00398 * 15 13 11 17 17 H 1.48496 * 109.47036 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47287 * 300.00839 * 15 13 11 19 19 O 1.43750 * 107.41924 * 2.10301 * 9 8 7 20 20 C 1.50696 * 109.47005 * 120.00190 * 2 1 3 21 21 C 1.38236 * 120.00050 * 59.72828 * 20 2 1 22 22 C 1.38236 * 120.00182 * 179.78789 * 21 20 2 23 23 C 1.38237 * 119.99775 * 0.46091 * 22 21 20 24 24 C 1.38234 * 119.99740 * 359.77129 * 23 22 21 25 25 C 1.38231 * 120.00567 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.47089 * 59.99708 * 1 2 3 27 27 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47503 * 299.99904 * 1 2 3 29 29 H 1.09000 * 109.47133 * 305.00306 * 4 2 1 30 30 H 1.08994 * 109.46860 * 185.00098 * 4 2 1 31 31 H 1.09007 * 110.90687 * 86.11902 * 7 5 4 32 32 H 1.09004 * 110.94169 * 322.53371 * 7 5 4 33 33 H 1.08992 * 110.49201 * 262.20655 * 8 7 5 34 34 H 1.09007 * 110.48703 * 139.55607 * 8 7 5 35 35 H 0.97004 * 119.99535 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99936 * 359.97438 * 21 20 2 37 37 H 1.08000 * 119.99952 * 180.24953 * 22 21 20 38 38 H 1.07992 * 120.00148 * 179.79063 * 23 22 21 39 39 H 1.08011 * 119.99935 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.00373 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0690 -2.4953 6 1 0.5655 0.2779 -2.4853 7 6 2.0289 -0.7008 -3.7816 8 6 2.1444 0.4410 -4.8205 9 6 2.3473 1.7084 -3.9677 10 1 1.5154 2.3958 -4.1215 11 6 3.6426 2.3791 -4.3465 12 1 4.2640 1.9547 -5.1211 13 6 4.0342 3.5346 -3.7043 14 7 3.2775 4.0512 -2.7608 15 14 5.6401 4.3655 -4.1733 16 1 5.5987 4.7486 -5.6074 17 1 5.8302 5.5806 -3.3411 18 1 6.7683 3.4275 -3.9439 19 8 2.3939 1.2978 -2.5909 20 6 2.0323 -0.7104 1.2304 21 6 1.6937 -2.0322 1.4520 22 6 2.1580 -2.6853 2.5784 23 6 2.9531 -2.0136 3.4881 24 6 3.2878 -0.6904 3.2690 25 6 2.8269 -0.0386 2.1405 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6053 -1.7198 -1.2952 30 1 3.1262 -0.7994 -1.2056 31 1 1.2494 -1.4079 -4.0658 32 1 2.9848 -1.2091 -3.6543 33 1 1.2286 0.5180 -5.4064 34 1 3.0029 0.2784 -5.4724 35 1 3.5533 4.8639 -2.3087 36 1 1.0688 -2.5557 0.7435 37 1 1.8968 -3.7191 2.7494 38 1 3.3131 -2.5227 4.3699 39 1 3.9087 -0.1655 3.9800 40 1 3.0880 0.9952 1.9695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310309695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:12 Heat of formation + Delta-G solvation = -59.128349 kcal Electronic energy + Delta-G solvation = -19425.618500 eV Core-core repulsion = 16589.544263 eV Total energy + Delta-G solvation = -2836.074236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.57041 -39.70852 -36.43741 -34.60938 -32.57415 -31.76723 -31.56335 -29.88582 -27.98387 -25.68446 -24.13189 -23.39250 -22.16414 -21.58108 -20.56304 -18.84788 -17.68955 -17.05494 -16.64498 -16.25127 -15.87833 -15.71696 -15.42515 -14.85716 -14.62596 -14.26259 -14.11136 -13.91460 -13.67130 -13.33115 -13.24698 -12.86948 -12.80010 -12.48067 -12.34579 -12.18203 -12.06439 -11.94281 -11.87321 -11.51451 -11.36724 -11.09576 -10.98194 -10.67774 -9.87787 -9.77314 -9.52287 -8.14390 -6.34793 0.51689 0.54649 1.38000 1.41388 1.48731 2.39898 2.93534 3.06671 3.60592 3.68700 3.96891 4.05596 4.10993 4.21076 4.28345 4.30096 4.32621 4.37101 4.55052 4.58218 4.68637 4.72592 4.74381 4.87642 4.96990 5.00192 5.04358 5.14310 5.18688 5.21369 5.25175 5.31286 5.39554 5.48535 5.54677 5.64814 5.66141 5.73703 5.86188 6.18729 6.20101 6.57622 7.02470 7.40737 8.93387 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.005296 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.050482 B = 5285.334223 C = 6079.801425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.050 4.050 3 H 0.044 0.956 4 C -0.085 4.085 5 C 0.053 3.947 6 H 0.058 0.942 7 C -0.136 4.136 8 C -0.141 4.141 9 C 0.195 3.805 10 H -0.014 1.014 11 C -0.556 4.556 12 H 0.063 0.937 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.959 3.041 16 H -0.263 1.263 17 H -0.283 1.283 18 H -0.271 1.271 19 O -0.384 6.384 20 C -0.079 4.079 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.144 4.144 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.260 0.740 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.134 0.866 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -14.305 9.175 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.069 4.069 3 H 0.063 0.937 4 C -0.122 4.122 5 C -0.005 4.005 6 H 0.076 0.924 7 C -0.173 4.173 8 C -0.179 4.179 9 C 0.139 3.861 10 H 0.003 0.997 11 C -0.593 4.593 12 H 0.081 0.919 13 C -0.180 4.180 14 N -0.540 5.540 15 Si 0.783 3.217 16 H -0.187 1.187 17 H -0.208 1.208 18 H -0.196 1.196 19 O -0.304 6.304 20 C -0.079 4.079 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.163 4.163 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.170 -14.046 9.460 17.441 hybrid contribution 0.788 1.205 -0.435 1.504 sum -3.382 -12.841 9.025 16.056 Atomic orbital electron populations 1.21808 0.93148 1.02793 1.01395 1.20026 0.96850 0.98030 0.91991 0.93749 1.21517 1.00339 0.98534 0.91809 1.23362 0.95428 0.86413 0.95250 0.92389 1.23057 1.02217 0.97433 0.94629 1.22935 1.01186 0.95231 0.98541 1.20150 0.94839 0.91539 0.79571 0.99670 1.21609 1.07766 1.09127 1.20827 0.91931 1.25957 1.00343 0.97464 0.94205 1.70182 1.38978 1.20657 1.24193 0.85624 0.79641 0.77720 0.78704 1.18712 1.20791 1.19638 1.89261 1.72542 1.39269 1.29297 1.19987 0.97337 0.95171 0.95431 1.21214 1.00665 0.93509 0.98597 1.21491 0.97442 1.00936 0.93957 1.21460 0.98790 0.94373 1.00433 1.21364 1.00066 0.95843 0.97140 1.21264 0.99209 1.00013 0.95768 0.93072 0.90300 0.92896 0.88289 0.93613 0.88341 0.91483 0.91301 0.91839 0.93100 0.84421 0.83336 0.83640 0.84813 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.78 71.98 0.63 -3.12 16 2 C -0.05 -1.67 2.54 -11.54 -0.03 -1.70 16 3 H 0.04 1.87 7.69 -2.39 -0.02 1.85 16 4 C -0.08 -2.82 4.19 30.59 0.13 -2.70 16 5 C 0.05 2.11 3.16 31.28 0.10 2.20 16 6 H 0.06 2.20 6.32 -2.39 -0.02 2.18 16 7 C -0.14 -4.75 6.59 31.89 0.21 -4.54 16 8 C -0.14 -5.91 6.63 31.58 0.21 -5.70 16 9 C 0.20 10.61 3.24 30.22 0.10 10.71 16 10 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 11 C -0.56 -32.66 8.78 25.60 0.22 -32.44 16 12 H 0.06 3.52 7.33 -2.91 -0.02 3.50 16 13 C 0.02 1.30 5.41 84.66 0.46 1.76 16 14 N -0.90 -56.53 12.93 21.45 0.28 -56.26 16 15 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 16 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 O -0.38 -20.76 10.21 -148.98 -1.52 -22.28 16 20 C -0.08 -2.33 4.78 -19.87 -0.09 -2.43 16 21 C -0.12 -2.86 8.76 22.27 0.20 -2.66 16 22 C -0.12 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 24 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 25 C -0.14 -4.37 9.67 22.27 0.22 -4.15 16 26 H 0.05 1.54 6.43 -2.39 -0.02 1.52 16 27 H 0.08 1.73 7.37 -2.39 -0.02 1.71 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 2.54 7.59 -2.39 -0.02 2.52 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 31 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.07 2.33 8.06 -2.39 -0.02 2.31 16 33 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.06 2.65 7.40 -2.38 -0.02 2.63 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.14 2.63 7.16 -2.91 -0.02 2.61 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 39 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.10 3.39 7.95 -2.91 -0.02 3.37 16 Total: -1.00 -70.48 323.17 4.80 -65.68 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: 1.00 Total: 17.65 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 3.02 Total: -52.26 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -1.52 Total: -22.28 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -70.48 4.80 -65.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310309695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.555 kcal (2) G-P(sol) polarization free energy of solvation -70.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds