Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50697 * 120.00320 * 2 1 4 4 C 1.52996 * 109.47453 * 125.00045 * 3 2 1 5 5 C 1.52996 * 109.47600 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47600 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47369 * 180.02562 * 6 5 4 8 8 C 1.39856 * 120.00178 * 179.97438 * 7 6 5 9 9 C 1.39607 * 119.83665 * 0.29139 * 8 7 6 10 10 C 1.38057 * 120.54605 * 180.25945 * 9 8 7 11 11 C 1.38742 * 120.22089 * 359.44422 * 10 9 8 12 12 N 1.38865 * 120.16205 * 180.25283 * 11 10 9 13 13 C 1.41561 * 119.66989 * 0.27833 * 11 10 9 14 14 C 1.41030 * 120.26162 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00086 * 334.21764 * 14 13 11 16 16 C 1.39885 * 119.99952 * 154.22763 * 14 13 11 17 17 N 1.30904 * 119.99951 * 342.94478 * 16 14 13 18 18 Si 1.86797 * 119.99805 * 162.93930 * 16 14 13 19 19 H 1.48501 * 109.46778 * 94.64058 * 18 16 14 20 20 H 1.48498 * 109.47154 * 214.63504 * 18 16 14 21 21 H 1.48499 * 109.47596 * 334.64030 * 18 16 14 22 22 C 1.38005 * 119.84128 * 179.97438 * 8 7 6 23 23 H 1.08000 * 120.00272 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99854 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00307 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47289 * 5.00166 * 3 2 1 27 27 H 1.09004 * 109.47226 * 245.00160 * 3 2 1 28 28 H 1.08994 * 109.47270 * 59.99918 * 4 3 2 29 29 H 1.09004 * 109.46999 * 300.00255 * 4 3 2 30 30 H 1.09004 * 109.46990 * 59.99657 * 5 4 3 31 31 H 1.09004 * 109.46926 * 300.00021 * 5 4 3 32 32 H 1.08994 * 109.47270 * 59.99640 * 6 5 4 33 33 H 1.09004 * 109.46999 * 299.99977 * 6 5 4 34 34 H 0.96997 * 120.00002 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.72748 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.89000 * 179.72131 * 10 9 8 37 37 H 0.96999 * 119.99792 * 0.02562 * 12 11 10 38 38 H 0.97000 * 119.99906 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99867 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.11561 * 0.04412 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7996 2.6582 1.1820 6 6 4.7707 2.6865 2.3639 7 7 5.5024 3.9557 2.3646 8 6 6.4528 4.2145 3.3575 9 6 6.7059 3.2584 4.3428 10 6 7.6371 3.5007 5.3328 11 6 8.3411 4.6960 5.3519 12 7 9.2812 4.9363 6.3453 13 6 8.0960 5.6696 4.3539 14 6 8.8050 6.8888 4.3611 15 1 9.2036 7.2762 5.2870 16 6 8.9916 7.5963 3.1688 17 7 8.8172 6.9972 2.0181 18 14 9.4896 9.3960 3.2190 19 1 10.9666 9.5040 3.1089 20 1 8.8549 10.1170 2.0866 21 1 9.0435 9.9976 4.5013 22 6 7.1405 5.4110 3.3546 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7399 0.5065 1.0920 29 1 2.4772 1.2355 2.1130 30 1 3.0944 3.4846 1.2717 31 1 4.3574 2.7561 0.2506 32 1 5.4759 1.8602 2.2746 33 1 4.2126 2.5888 3.2951 34 1 5.3277 4.6166 1.6764 35 1 6.1661 2.3230 4.3326 36 1 7.8212 2.7554 6.0924 37 1 9.4472 4.2674 7.0279 38 1 9.7724 5.7726 6.3561 39 1 8.9470 7.4877 1.1913 40 1 6.9452 6.1464 2.5882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310399680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = 20.766469 kcal Electronic energy + Delta-G solvation = -18339.180422 eV Core-core repulsion = 15538.863436 eV Total energy + Delta-G solvation = -2800.316986 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -37.98525 -36.76913 -35.24515 -33.43735 -33.03477 -31.12441 -29.38440 -28.18119 -25.84481 -24.69995 -23.03556 -21.50748 -20.60655 -19.88396 -19.58409 -17.02253 -16.08122 -15.87523 -15.43174 -15.06341 -14.92671 -14.59712 -14.25275 -13.86836 -13.31573 -12.84607 -12.50541 -12.36765 -11.99265 -11.89682 -11.76623 -11.43881 -11.35119 -11.10130 -11.01446 -10.93678 -10.79306 -10.62597 -10.34757 -9.85456 -9.66028 -9.49959 -9.28771 -9.01722 -7.72024 -7.19638 -6.59771 -5.49962 -4.03441 2.08292 2.92598 3.14515 3.19025 3.33361 3.51487 4.05185 4.37686 4.73339 4.84189 4.87589 5.02104 5.09520 5.39399 5.43474 5.45843 5.60704 5.72710 5.77971 5.87259 5.89766 5.98278 6.12958 6.38220 6.40282 6.40996 6.44245 6.58467 6.67362 7.15315 7.18876 7.34538 7.52408 7.73801 7.91731 8.03427 8.15427 8.48964 8.79189 8.93662 8.97616 9.03245 9.28966 9.37450 10.39489 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.003648 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.257578 B = 7674.123004 C = 8643.670082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.139 3.861 7 N -0.765 5.765 8 C 0.177 3.823 9 C -0.256 4.256 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.464 4.464 15 H 0.071 0.929 16 C 0.077 3.923 17 N -0.799 5.799 18 Si 0.900 3.100 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.202 4.202 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.387 0.613 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.374 0.626 38 H 0.388 0.612 39 H 0.274 0.726 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 -7.645 -3.144 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.168 4.168 6 C 0.014 3.986 7 N -0.400 5.400 8 C 0.078 3.922 9 C -0.279 4.279 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.090 3.910 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.139 4.139 17 N -0.426 5.426 18 Si 0.725 3.275 19 H -0.200 1.200 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.226 4.226 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.199 0.801 38 H 0.216 0.784 39 H 0.085 0.915 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.735 -7.780 -3.406 12.920 hybrid contribution 0.456 0.988 -0.115 1.094 sum -9.280 -6.793 -3.521 12.027 Atomic orbital electron populations 1.23837 0.96024 1.01691 1.02287 1.23028 0.96037 0.98741 0.98920 1.20802 0.98270 0.95111 0.99139 1.21440 0.97666 0.97671 0.98100 1.21779 0.98289 0.97609 0.99129 1.20973 0.93130 0.87867 0.96648 1.44338 1.44960 1.18439 1.32240 1.17525 0.90753 0.94699 0.89186 1.19612 1.08105 0.99506 1.00722 1.19708 1.01261 0.96213 1.00522 1.17854 0.94986 0.94636 0.94202 1.41802 1.47225 1.22123 1.32031 1.16975 0.91826 0.91616 0.90622 1.19116 1.31893 1.04503 0.94035 0.91116 1.25747 0.93695 0.99383 0.95092 1.69894 1.37863 1.36599 0.98267 0.86447 0.78948 0.83215 0.78862 1.19953 1.20336 1.18758 1.20467 1.00936 0.96605 1.04613 0.88733 0.88671 0.87474 0.91538 0.90955 0.91668 0.91737 0.91728 0.91616 0.93741 0.93772 0.78031 0.89748 0.89801 0.80132 0.78363 0.91496 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 14.32 29.02 0.42 -1.24 16 2 C -0.15 -1.31 9.52 -36.03 -0.34 -1.65 16 3 C -0.10 -0.88 5.66 -27.89 -0.16 -1.04 16 4 C -0.11 -1.14 5.20 -26.74 -0.14 -1.28 16 5 C -0.13 -1.59 5.33 -26.74 -0.14 -1.74 16 6 C 0.14 2.22 4.90 -4.04 -0.02 2.20 16 7 N -0.76 -15.08 5.74 -58.64 -0.34 -15.41 16 8 C 0.18 4.23 6.64 -83.77 -0.56 3.68 16 9 C -0.26 -5.98 9.31 -39.14 -0.36 -6.34 16 10 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 11 C 0.08 2.08 6.79 -83.22 -0.56 1.52 16 12 N -0.89 -18.56 8.98 32.75 0.29 -18.27 16 13 C 0.09 2.56 5.57 -106.66 -0.59 1.97 16 14 C -0.46 -12.35 8.49 -37.91 -0.32 -12.67 16 15 H 0.07 1.79 6.69 -52.49 -0.35 1.44 16 16 C 0.08 1.96 5.14 -17.33 -0.09 1.87 16 17 N -0.80 -21.14 10.99 55.55 0.61 -20.53 16 18 Si 0.90 19.09 29.59 -169.99 -5.03 14.06 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 C -0.20 -5.34 8.50 -38.75 -0.33 -5.67 16 23 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 24 H 0.09 0.74 7.84 -52.48 -0.41 0.33 16 25 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 26 H 0.07 0.60 7.79 -51.93 -0.40 0.20 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.73 7.93 -51.93 -0.41 0.32 16 33 H 0.04 0.72 7.95 -51.93 -0.41 0.30 16 34 H 0.39 7.25 8.48 -40.82 -0.35 6.90 16 35 H 0.08 1.80 6.69 -52.49 -0.35 1.45 16 36 H 0.08 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.37 6.60 8.83 -40.82 -0.36 6.24 16 38 H 0.39 7.93 7.04 -40.82 -0.29 7.64 16 39 H 0.27 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.12 3.18 6.22 -52.49 -0.33 2.85 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -28.73 330.50 -9.26 -37.99 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -6.18 Total: 21.56 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -3.60 Total: -24.37 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.57 Total: -54.21 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.73 -9.26 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310399680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.752 kcal (2) G-P(sol) polarization free energy of solvation -28.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds