Wall clock time and date at job start Mon Mar 30 2020 07:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50697 * 120.00320 * 2 1 4 4 C 1.52996 * 109.47453 * 125.00045 * 3 2 1 5 5 C 1.52996 * 109.47600 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47600 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.47369 * 180.02562 * 6 5 4 8 8 C 1.39856 * 120.00178 * 179.97438 * 7 6 5 9 9 C 1.39607 * 119.83665 * 0.29139 * 8 7 6 10 10 C 1.38057 * 120.54605 * 180.25945 * 9 8 7 11 11 C 1.38742 * 120.22089 * 359.44422 * 10 9 8 12 12 N 1.38865 * 120.16205 * 180.25283 * 11 10 9 13 13 C 1.41561 * 119.66989 * 0.27833 * 11 10 9 14 14 C 1.41030 * 120.26162 * 180.02562 * 13 11 10 15 15 H 1.07996 * 120.00086 * 334.21764 * 14 13 11 16 16 C 1.39885 * 119.99952 * 154.22763 * 14 13 11 17 17 N 1.30904 * 119.99951 * 342.94478 * 16 14 13 18 18 Si 1.86797 * 119.99805 * 162.93930 * 16 14 13 19 19 H 1.48501 * 109.46778 * 94.64058 * 18 16 14 20 20 H 1.48498 * 109.47154 * 214.63504 * 18 16 14 21 21 H 1.48499 * 109.47596 * 334.64030 * 18 16 14 22 22 C 1.38005 * 119.84128 * 179.97438 * 8 7 6 23 23 H 1.08000 * 120.00272 * 179.97438 * 1 2 3 24 24 H 1.08007 * 119.99854 * 359.97438 * 1 2 3 25 25 H 1.08005 * 120.00307 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47289 * 5.00166 * 3 2 1 27 27 H 1.09004 * 109.47226 * 245.00160 * 3 2 1 28 28 H 1.08994 * 109.47270 * 59.99918 * 4 3 2 29 29 H 1.09004 * 109.46999 * 300.00255 * 4 3 2 30 30 H 1.09004 * 109.46990 * 59.99657 * 5 4 3 31 31 H 1.09004 * 109.46926 * 300.00021 * 5 4 3 32 32 H 1.08994 * 109.47270 * 59.99640 * 6 5 4 33 33 H 1.09004 * 109.46999 * 299.99977 * 6 5 4 34 34 H 0.96997 * 120.00002 * 359.97438 * 7 6 5 35 35 H 1.08001 * 119.72748 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.89000 * 179.72131 * 10 9 8 37 37 H 0.96999 * 119.99792 * 0.02562 * 12 11 10 38 38 H 0.97000 * 119.99906 * 179.97438 * 12 11 10 39 39 H 0.97002 * 119.99867 * 180.02562 * 17 16 14 40 40 H 1.08000 * 120.11561 * 0.04412 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 3.7996 2.6582 1.1820 6 6 4.7707 2.6865 2.3639 7 7 5.5024 3.9557 2.3646 8 6 6.4528 4.2145 3.3575 9 6 6.7059 3.2584 4.3428 10 6 7.6371 3.5007 5.3328 11 6 8.3411 4.6960 5.3519 12 7 9.2812 4.9363 6.3453 13 6 8.0960 5.6696 4.3539 14 6 8.8050 6.8888 4.3611 15 1 9.2036 7.2762 5.2870 16 6 8.9916 7.5963 3.1688 17 7 8.8172 6.9972 2.0181 18 14 9.4896 9.3960 3.2190 19 1 10.9666 9.5040 3.1089 20 1 8.8549 10.1170 2.0866 21 1 9.0435 9.9976 4.5013 22 6 7.1405 5.4110 3.3546 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6213 1.4025 -0.9314 28 1 3.7399 0.5065 1.0920 29 1 2.4772 1.2355 2.1130 30 1 3.0944 3.4846 1.2717 31 1 4.3574 2.7561 0.2506 32 1 5.4759 1.8602 2.2746 33 1 4.2126 2.5888 3.2951 34 1 5.3277 4.6166 1.6764 35 1 6.1661 2.3230 4.3326 36 1 7.8212 2.7554 6.0924 37 1 9.4472 4.2674 7.0279 38 1 9.7724 5.7726 6.3561 39 1 8.9470 7.4877 1.1913 40 1 6.9452 6.1464 2.5882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310399680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:57 Heat of formation + Delta-G solvation = 4.660637 kcal Electronic energy + Delta-G solvation = -18339.878823 eV Core-core repulsion = 15538.863436 eV Total energy + Delta-G solvation = -2801.015387 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.76170 -37.89038 -36.52140 -35.32906 -34.30884 -32.48976 -31.30170 -29.45750 -27.41420 -26.50067 -24.28060 -23.00628 -21.89345 -21.40827 -20.56218 -18.89235 -17.79432 -17.23781 -16.78364 -16.64745 -16.38569 -15.98149 -15.62459 -14.82320 -14.60091 -14.28734 -14.12425 -13.84792 -13.59633 -13.36519 -13.09743 -12.91479 -12.85636 -12.67855 -12.37200 -12.13353 -12.00258 -11.83165 -11.63849 -11.46101 -11.26341 -11.15689 -10.91483 -10.17075 -9.39974 -9.14274 -8.50240 -7.29590 -5.99517 1.12432 1.41500 1.43869 1.50056 1.55272 1.65781 2.27672 2.90550 2.99042 3.77652 3.89661 3.96396 4.05368 4.09989 4.30240 4.50581 4.56451 4.62425 4.69855 4.78471 4.87313 4.91603 4.97682 5.08979 5.15890 5.24268 5.35530 5.37118 5.41564 5.45062 5.68277 5.79232 5.89600 5.93403 6.06854 6.17251 6.29144 6.57375 6.97863 7.06523 7.13773 7.28431 7.48194 7.67648 8.51140 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.003648 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.257578 B = 7674.123004 C = 8643.670082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.162 4.162 3 C -0.093 4.093 4 C -0.104 4.104 5 C -0.119 4.119 6 C 0.138 3.862 7 N -0.763 5.763 8 C 0.171 3.829 9 C -0.260 4.260 10 C -0.158 4.158 11 C 0.069 3.931 12 N -0.879 5.879 13 C 0.059 3.941 14 C -0.492 4.492 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.832 5.832 18 Si 0.975 3.025 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.261 1.261 22 C -0.227 4.227 23 H 0.106 0.894 24 H 0.097 0.903 25 H 0.113 0.887 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.389 0.611 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.390 0.610 38 H 0.390 0.610 39 H 0.279 0.721 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.255 -8.195 -3.033 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.180 4.180 3 C -0.130 4.130 4 C -0.142 4.142 5 C -0.157 4.157 6 C 0.013 3.987 7 N -0.397 5.397 8 C 0.071 3.929 9 C -0.284 4.284 10 C -0.182 4.182 11 C -0.033 4.033 12 N -0.423 5.423 13 C 0.054 3.946 14 C -0.523 4.523 15 H 0.092 0.908 16 C -0.180 4.180 17 N -0.460 5.460 18 Si 0.797 3.203 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.185 1.185 22 C -0.252 4.252 23 H 0.124 0.876 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.218 0.782 38 H 0.218 0.782 39 H 0.090 0.910 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.357 -8.361 -3.285 13.710 hybrid contribution 0.585 1.048 -0.141 1.208 sum -9.772 -7.313 -3.426 12.677 Atomic orbital electron populations 1.24012 0.95993 1.02428 1.01261 1.23084 0.96340 0.98723 0.99835 1.20755 0.98065 0.95573 0.98633 1.21380 0.97717 0.96390 0.98744 1.21690 0.97597 0.99010 0.97408 1.21154 0.93338 0.85835 0.98341 1.44467 1.44188 1.19826 1.31185 1.17658 0.91075 0.94037 0.90141 1.19927 1.08078 1.00085 1.00331 1.20061 1.00747 0.96357 1.01080 1.18029 0.95934 0.94731 0.94617 1.41675 1.46312 1.22697 1.31615 1.17390 0.92589 0.92748 0.91863 1.19380 1.32902 1.05337 0.94723 0.90753 1.26584 0.93423 1.03563 0.94411 1.69974 1.38733 1.38337 0.98954 0.85314 0.78757 0.77414 0.78850 1.19145 1.19777 1.18494 1.20443 1.02374 0.97544 1.04809 0.87601 0.88437 0.86865 0.91442 0.90734 0.91366 0.91688 0.91419 0.91508 0.94042 0.93747 0.77779 0.87596 0.87075 0.78192 0.78201 0.91034 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.90 14.32 67.79 0.97 -1.93 16 2 C -0.16 -2.55 9.52 25.65 0.24 -2.30 16 3 C -0.09 -1.55 5.66 29.85 0.17 -1.38 16 4 C -0.10 -1.96 5.20 30.59 0.16 -1.80 16 5 C -0.12 -2.75 5.33 30.59 0.16 -2.59 16 6 C 0.14 4.23 4.90 86.38 0.42 4.66 16 7 N -0.76 -29.98 5.74 -339.44 -1.95 -31.92 16 8 C 0.17 8.26 6.64 38.14 0.25 8.51 16 9 C -0.26 -11.94 9.31 22.56 0.21 -11.73 16 10 C -0.16 -7.26 9.86 22.35 0.22 -7.04 16 11 C 0.07 3.40 6.79 38.97 0.26 3.67 16 12 N -0.88 -36.06 8.98 -50.31 -0.45 -36.51 16 13 C 0.06 3.27 5.57 -21.18 -0.12 3.16 16 14 C -0.49 -26.70 8.49 23.35 0.20 -26.50 16 15 H 0.07 3.81 6.69 -2.91 -0.02 3.79 16 16 C 0.03 1.71 5.14 85.23 0.44 2.15 16 17 N -0.83 -45.09 10.99 21.82 0.24 -44.85 16 18 Si 0.97 39.50 29.59 68.60 2.03 41.53 16 19 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 20 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 C -0.23 -12.36 8.50 22.81 0.19 -12.17 16 23 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 24 H 0.10 1.35 7.84 -2.91 -0.02 1.32 16 25 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 26 H 0.07 1.10 7.79 -2.38 -0.02 1.09 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.31 7.93 -2.39 -0.02 1.29 16 33 H 0.04 1.38 7.95 -2.38 -0.02 1.36 16 34 H 0.39 14.73 8.48 -92.71 -0.79 13.94 16 35 H 0.11 4.31 6.69 -2.91 -0.02 4.29 16 36 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 37 H 0.39 13.20 8.83 -92.71 -0.82 12.38 16 38 H 0.39 15.79 7.04 -92.71 -0.65 15.14 16 39 H 0.28 13.85 8.30 -92.71 -0.77 13.08 16 40 H 0.10 5.53 6.22 -2.91 -0.02 5.51 16 Total: -1.00 -61.79 330.50 2.45 -59.34 By element: Atomic # 1 Polarization: 58.94 SS G_CDS: -1.21 Total: 57.72 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 3.79 Total: -45.31 kcal Atomic # 7 Polarization: -111.12 SS G_CDS: -2.16 Total: -113.28 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Total: -61.79 2.45 -59.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310399680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.998 kcal (2) G-P(sol) polarization free energy of solvation -61.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds