Wall clock time and date at job start Mon Mar 30 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 C 1.52991 * 109.47196 * 120.00501 * 2 1 3 5 5 C 1.50700 * 109.87358 * 300.01534 * 4 2 1 6 6 C 1.38235 * 120.00212 * 281.04828 * 5 4 2 7 7 C 1.38236 * 120.00254 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.38241 * 120.00230 * 0.25273 * 8 7 6 10 10 C 1.38238 * 119.99643 * 359.46942 * 9 8 7 11 11 C 1.54103 * 109.87880 * 179.01041 * 4 2 1 12 12 C 1.55138 * 104.03434 * 242.40725 * 11 4 2 13 13 C 1.54996 * 102.08957 * 20.99743 * 12 11 4 14 14 H 1.08996 * 110.75583 * 81.45806 * 13 12 11 15 15 C 1.50704 * 110.61644 * 204.38967 * 13 12 11 16 16 H 1.08003 * 120.00126 * 355.52149 * 15 13 12 17 17 C 1.37877 * 119.99939 * 175.52696 * 15 13 12 18 18 N 1.31508 * 120.00064 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47241 * 89.99324 * 19 17 15 21 21 H 1.48496 * 109.46755 * 209.99632 * 19 17 15 22 22 H 1.48505 * 109.46683 * 329.99594 * 19 17 15 23 23 O 1.43746 * 109.88433 * 61.02421 * 4 2 1 24 24 H 1.09002 * 109.46624 * 299.99621 * 1 2 3 25 25 H 1.09003 * 109.46814 * 59.99625 * 1 2 3 26 26 H 1.08996 * 109.46627 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46624 * 240.00379 * 2 1 3 28 28 H 1.09005 * 109.47310 * 173.22231 * 3 2 1 29 29 H 1.09002 * 109.47742 * 293.22955 * 3 2 1 30 30 H 1.09008 * 109.46954 * 53.22718 * 3 2 1 31 31 H 1.08002 * 119.99839 * 359.97229 * 6 5 4 32 32 H 1.07998 * 120.00063 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00153 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00226 * 179.72745 * 9 8 7 35 35 H 1.08001 * 120.00341 * 180.29550 * 10 9 8 36 36 H 1.09001 * 110.48980 * 1.13264 * 11 4 2 37 37 H 1.09003 * 110.48857 * 123.78038 * 11 4 2 38 38 H 1.08994 * 110.98242 * 262.76480 * 12 11 4 39 39 H 1.08997 * 110.86382 * 139.17588 * 12 11 4 40 40 H 0.97001 * 119.99582 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5424 -0.0183 2.4857 6 6 2.1647 1.1364 2.9220 7 6 1.7079 1.7816 4.0560 8 6 0.6292 1.2717 4.7541 9 6 0.0105 0.1138 4.3211 10 6 0.4637 -0.5282 3.1838 11 6 3.5808 -0.7485 1.2461 12 6 3.9304 -2.2590 1.1908 13 6 2.6242 -2.8740 0.6267 14 1 2.5872 -2.7739 -0.4580 15 6 2.5023 -4.3212 1.0289 16 1 3.3053 -4.8013 1.5686 17 6 1.3656 -5.0325 0.7078 18 7 0.3877 -4.4479 0.0511 19 14 1.2142 -6.8263 1.2070 20 1 0.5899 -6.9150 2.5514 21 1 0.3687 -7.5449 0.2201 22 1 2.5638 -7.4447 1.2461 23 8 1.5856 -2.0851 1.2459 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1233 1.4449 0.1213 29 1 1.7791 1.9202 -0.9443 30 1 1.5811 1.9901 0.8232 31 1 3.0077 1.5345 2.3769 32 1 2.1943 2.6835 4.3971 33 1 0.2725 1.7755 5.6403 34 1 -0.8296 -0.2870 4.8689 35 1 -0.0226 -1.4302 2.8427 36 1 3.9699 -0.2324 0.3684 37 1 3.9721 -0.2989 2.1588 38 1 4.1445 -2.6468 2.1867 39 1 4.7679 -2.4392 0.5169 40 1 -0.4121 -4.9483 -0.1745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310401695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:56 Heat of formation + Delta-G solvation = -32.015303 kcal Electronic energy + Delta-G solvation = -20573.007464 eV Core-core repulsion = 17738.108937 eV Total energy + Delta-G solvation = -2834.898526 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92663 -37.63272 -34.48845 -32.36074 -31.26123 -30.56689 -30.19472 -27.58772 -26.55619 -24.61839 -22.36002 -21.89072 -21.50585 -19.88497 -18.66520 -16.71401 -16.16728 -15.36478 -15.14777 -14.67572 -14.35192 -14.08819 -13.65119 -13.47812 -13.07903 -12.84684 -12.28754 -12.10866 -11.98472 -11.87437 -11.64324 -11.45698 -11.06151 -10.92459 -10.84953 -10.57545 -10.53204 -10.36933 -10.17476 -10.04190 -9.78694 -9.57007 -9.05245 -8.59919 -8.46056 -8.22474 -7.95267 -6.01065 -4.12888 1.77723 1.85135 3.31240 3.37814 3.40358 4.22127 4.42492 4.86934 5.19759 5.28344 5.31414 5.36708 5.44998 5.48935 5.61960 5.70139 5.77259 5.84914 5.91739 6.06302 6.10881 6.22265 6.27105 6.33388 6.38060 6.41542 6.51693 6.52440 6.61279 6.67661 6.80818 6.81509 6.83505 6.91820 7.05541 7.10702 7.21354 7.46023 7.54965 7.89517 8.25187 8.59766 8.99056 9.57171 11.06307 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.007183 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.551835 B = 3896.904975 C = 4260.226745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 C -0.151 4.151 4 C 0.138 3.862 5 C -0.052 4.052 6 C -0.120 4.120 7 C -0.132 4.132 8 C -0.134 4.134 9 C -0.128 4.128 10 C -0.088 4.088 11 C -0.147 4.147 12 C -0.148 4.148 13 C 0.211 3.789 14 H 0.025 0.975 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.079 3.921 18 N -0.861 5.861 19 Si 0.889 3.111 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.273 1.273 23 O -0.334 6.334 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.812 11.685 3.590 12.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.114 4.114 3 C -0.208 4.208 4 C 0.096 3.904 5 C -0.052 4.052 6 C -0.138 4.138 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.146 4.146 10 C -0.106 4.106 11 C -0.185 4.185 12 C -0.186 4.186 13 C 0.156 3.844 14 H 0.043 0.957 15 C -0.567 4.567 16 H 0.081 0.919 17 C -0.127 4.127 18 N -0.497 5.497 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.198 1.198 23 O -0.253 6.253 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.431 11.580 3.580 12.205 hybrid contribution 0.033 -0.835 0.222 0.865 sum 1.464 10.745 3.802 11.492 Atomic orbital electron populations 1.21722 0.94879 1.03170 0.99821 1.21402 0.96829 0.94974 0.98217 1.22052 1.00679 0.96833 1.01268 1.20692 0.91969 0.87415 0.90296 1.19933 0.95101 0.94397 0.95806 1.21000 1.00246 0.95808 0.96747 1.20961 0.97709 1.00119 0.96230 1.21005 0.97143 0.97024 1.00006 1.21156 1.00279 0.95966 0.97244 1.21232 0.95804 0.99582 0.93979 1.23165 0.95612 0.98502 1.01173 1.23265 1.00650 0.93264 1.01384 1.20629 0.80748 0.90374 0.92622 0.95698 1.20988 1.03480 0.93298 1.38931 0.91903 1.25038 0.95645 0.97990 0.94012 1.70028 1.06223 1.36111 1.37347 0.86657 0.78136 0.85084 0.78469 1.20537 1.21155 1.19804 1.89260 1.43039 1.12249 1.80788 0.93476 0.94191 0.90645 0.90983 0.92834 0.93325 0.92361 0.86370 0.86858 0.86992 0.86671 0.84729 0.91614 0.91771 0.91814 0.92403 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.68 37.16 0.32 -2.21 16 2 C -0.10 -1.71 2.30 -90.62 -0.21 -1.92 16 3 C -0.15 -2.18 7.72 37.16 0.29 -1.90 16 4 C 0.14 2.69 0.49 -91.20 -0.04 2.65 16 5 C -0.05 -0.95 3.59 -104.62 -0.38 -1.32 16 6 C -0.12 -1.85 6.56 -39.58 -0.26 -2.11 16 7 C -0.13 -1.84 10.05 -39.59 -0.40 -2.23 16 8 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 16 9 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 10 C -0.09 -1.65 8.54 -39.58 -0.34 -1.98 16 11 C -0.15 -2.66 5.13 -25.02 -0.13 -2.79 16 12 C -0.15 -3.10 6.56 -24.55 -0.16 -3.26 16 13 C 0.21 5.36 3.11 -26.83 -0.08 5.27 16 14 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 15 C -0.53 -14.72 8.83 -34.44 -0.30 -15.03 16 16 H 0.06 1.71 7.78 -52.48 -0.41 1.31 16 17 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -24.91 12.94 55.43 0.72 -24.19 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 O -0.33 -8.26 8.23 -35.23 -0.29 -8.55 16 24 H 0.05 0.83 6.73 -51.93 -0.35 0.48 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.62 7.73 -51.93 -0.40 1.22 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.05 0.71 6.12 -51.93 -0.32 0.40 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.83 6.15 -51.92 -0.32 0.51 16 31 H 0.12 1.63 6.21 -52.49 -0.33 1.31 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.85 7.25 -52.49 -0.38 2.47 16 36 H 0.07 1.07 6.42 -51.93 -0.33 0.73 16 37 H 0.06 1.08 6.53 -51.93 -0.34 0.74 16 38 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -29.14 311.27 -8.60 -37.74 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.11 Total: 3.47 kcal Atomic # 6 Polarization: -26.83 SS G_CDS: -2.58 Total: -29.41 kcal Atomic # 7 Polarization: -24.91 SS G_CDS: 0.72 Total: -24.19 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.29 Total: -8.55 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.14 -8.60 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310401695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.720 kcal (2) G-P(sol) polarization free energy of solvation -29.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds