Wall clock time and date at job start Mon Mar 30 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 C 1.52991 * 109.47196 * 120.00501 * 2 1 3 5 5 C 1.50700 * 109.87358 * 300.01534 * 4 2 1 6 6 C 1.38235 * 120.00212 * 281.04828 * 5 4 2 7 7 C 1.38236 * 120.00254 * 179.97438 * 6 5 4 8 8 C 1.38230 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.38241 * 120.00230 * 0.25273 * 8 7 6 10 10 C 1.38238 * 119.99643 * 359.46942 * 9 8 7 11 11 C 1.54103 * 109.87880 * 179.01041 * 4 2 1 12 12 C 1.55138 * 104.03434 * 242.40725 * 11 4 2 13 13 C 1.54996 * 102.08957 * 20.99743 * 12 11 4 14 14 H 1.08996 * 110.75583 * 81.45806 * 13 12 11 15 15 C 1.50704 * 110.61644 * 204.38967 * 13 12 11 16 16 H 1.08003 * 120.00126 * 355.52149 * 15 13 12 17 17 C 1.37877 * 119.99939 * 175.52696 * 15 13 12 18 18 N 1.31508 * 120.00064 * 359.97438 * 17 15 13 19 19 Si 1.86806 * 119.99894 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47241 * 89.99324 * 19 17 15 21 21 H 1.48496 * 109.46755 * 209.99632 * 19 17 15 22 22 H 1.48505 * 109.46683 * 329.99594 * 19 17 15 23 23 O 1.43746 * 109.88433 * 61.02421 * 4 2 1 24 24 H 1.09002 * 109.46624 * 299.99621 * 1 2 3 25 25 H 1.09003 * 109.46814 * 59.99625 * 1 2 3 26 26 H 1.08996 * 109.46627 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46624 * 240.00379 * 2 1 3 28 28 H 1.09005 * 109.47310 * 173.22231 * 3 2 1 29 29 H 1.09002 * 109.47742 * 293.22955 * 3 2 1 30 30 H 1.09008 * 109.46954 * 53.22718 * 3 2 1 31 31 H 1.08002 * 119.99839 * 359.97229 * 6 5 4 32 32 H 1.07998 * 120.00063 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.00153 * 179.97438 * 8 7 6 34 34 H 1.08000 * 120.00226 * 179.72745 * 9 8 7 35 35 H 1.08001 * 120.00341 * 180.29550 * 10 9 8 36 36 H 1.09001 * 110.48980 * 1.13264 * 11 4 2 37 37 H 1.09003 * 110.48857 * 123.78038 * 11 4 2 38 38 H 1.08994 * 110.98242 * 262.76480 * 12 11 4 39 39 H 1.08997 * 110.86382 * 139.17588 * 12 11 4 40 40 H 0.97001 * 119.99582 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.5424 -0.0183 2.4857 6 6 2.1647 1.1364 2.9220 7 6 1.7079 1.7816 4.0560 8 6 0.6292 1.2717 4.7541 9 6 0.0105 0.1138 4.3211 10 6 0.4637 -0.5282 3.1838 11 6 3.5808 -0.7485 1.2461 12 6 3.9304 -2.2590 1.1908 13 6 2.6242 -2.8740 0.6267 14 1 2.5872 -2.7739 -0.4580 15 6 2.5023 -4.3212 1.0289 16 1 3.3053 -4.8013 1.5686 17 6 1.3656 -5.0325 0.7078 18 7 0.3877 -4.4479 0.0511 19 14 1.2142 -6.8263 1.2070 20 1 0.5899 -6.9150 2.5514 21 1 0.3687 -7.5449 0.2201 22 1 2.5638 -7.4447 1.2461 23 8 1.5856 -2.0851 1.2459 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1233 1.4449 0.1213 29 1 1.7791 1.9202 -0.9443 30 1 1.5811 1.9901 0.8232 31 1 3.0077 1.5345 2.3769 32 1 2.1943 2.6835 4.3971 33 1 0.2725 1.7755 5.6403 34 1 -0.8296 -0.2870 4.8689 35 1 -0.0226 -1.4302 2.8427 36 1 3.9699 -0.2324 0.3684 37 1 3.9721 -0.2989 2.1588 38 1 4.1445 -2.6468 2.1867 39 1 4.7679 -2.4392 0.5169 40 1 -0.4121 -4.9483 -0.1745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310401695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:55 Heat of formation + Delta-G solvation = -47.273923 kcal Electronic energy + Delta-G solvation = -20573.669127 eV Core-core repulsion = 17738.108937 eV Total energy + Delta-G solvation = -2835.560190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37518 -39.05116 -36.07026 -34.40184 -32.83878 -31.90485 -31.52184 -29.36257 -27.90663 -26.39003 -23.85162 -23.30796 -22.86476 -21.56880 -20.09571 -18.64265 -17.65997 -16.95777 -16.65692 -16.41667 -15.84616 -15.40423 -15.16424 -14.98930 -14.51385 -14.17673 -14.06061 -13.74878 -13.43258 -13.29516 -12.97164 -12.90522 -12.84627 -12.52791 -12.37712 -12.28941 -12.03791 -11.95846 -11.72812 -11.60672 -11.29454 -11.16246 -10.94950 -10.70244 -9.86258 -9.66970 -9.42670 -8.14840 -6.34388 0.56909 0.62488 1.37955 1.39404 1.49578 2.39365 2.99345 3.05336 3.55159 3.81051 3.90932 4.08427 4.19907 4.23916 4.27447 4.37639 4.38494 4.42789 4.62253 4.72225 4.78946 4.82736 4.84111 4.88232 4.98709 5.00897 5.08681 5.12746 5.16719 5.28360 5.28976 5.35438 5.49414 5.51132 5.58398 5.69545 5.75350 5.77001 5.91195 6.19513 6.24132 6.61851 7.03071 7.40145 8.92542 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.021725 B = 0.007183 C = 0.006571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.551835 B = 3896.904975 C = 4260.226745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.096 4.096 3 C -0.140 4.140 4 C 0.126 3.874 5 C -0.070 4.070 6 C -0.119 4.119 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.134 4.134 10 C -0.120 4.120 11 C -0.136 4.136 12 C -0.142 4.142 13 C 0.205 3.795 14 H -0.009 1.009 15 C -0.553 4.553 16 H 0.062 0.938 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.956 3.044 20 H -0.279 1.279 21 H -0.280 1.280 22 H -0.262 1.262 23 O -0.366 6.366 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.185 14.292 5.125 15.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.115 4.115 3 C -0.197 4.197 4 C 0.086 3.914 5 C -0.070 4.070 6 C -0.137 4.137 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.152 4.152 10 C -0.139 4.139 11 C -0.173 4.173 12 C -0.180 4.180 13 C 0.149 3.851 14 H 0.009 0.991 15 C -0.591 4.591 16 H 0.080 0.920 17 C -0.176 4.176 18 N -0.532 5.532 19 Si 0.781 3.219 20 H -0.204 1.204 21 H -0.205 1.205 22 H -0.186 1.186 23 O -0.285 6.285 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.816 14.193 5.117 15.348 hybrid contribution -0.432 -1.584 -0.223 1.657 sum 2.384 12.608 4.894 13.733 Atomic orbital electron populations 1.21594 0.95682 1.00362 1.00925 1.21392 0.96196 0.97366 0.96538 1.21964 1.01612 0.93649 1.02508 1.20992 0.93132 0.85248 0.92051 1.19861 0.95737 0.95867 0.95527 1.21212 1.00481 0.94560 0.97435 1.21436 0.96941 1.00706 0.94848 1.21412 0.96535 0.95781 1.00736 1.21326 1.00850 0.96753 0.96273 1.21011 0.97297 0.99281 0.96275 1.23155 0.94414 0.96479 1.03269 1.23143 0.98851 0.95200 1.00792 1.20445 0.83412 0.90226 0.90980 0.99094 1.21403 1.03625 0.95230 1.38823 0.92032 1.25875 0.95296 1.02440 0.93983 1.70176 1.06687 1.37749 1.38616 0.85606 0.78526 0.79821 0.77961 1.20440 1.20490 1.18608 1.89191 1.43530 1.15202 1.80596 0.93022 0.92197 0.95402 0.93357 0.91109 0.91727 0.91614 0.84141 0.82876 0.83477 0.85529 0.89296 0.89303 0.89647 0.92642 0.90813 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.68 71.98 0.63 -4.26 16 2 C -0.10 -3.48 2.30 -10.80 -0.02 -3.51 16 3 C -0.14 -3.66 7.72 71.98 0.56 -3.11 16 4 C 0.13 5.02 0.49 -11.17 -0.01 5.01 16 5 C -0.07 -2.49 3.59 -19.86 -0.07 -2.57 16 6 C -0.12 -3.26 6.56 22.27 0.15 -3.11 16 7 C -0.12 -2.79 10.05 22.27 0.22 -2.56 16 8 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 9 C -0.13 -4.11 10.05 22.27 0.22 -3.88 16 10 C -0.12 -4.65 8.54 22.27 0.19 -4.46 16 11 C -0.14 -4.73 5.13 31.70 0.16 -4.57 16 12 C -0.14 -6.01 6.56 32.01 0.21 -5.80 16 13 C 0.21 10.95 3.11 30.53 0.10 11.04 16 14 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 15 C -0.55 -32.19 8.83 25.60 0.23 -31.96 16 16 H 0.06 3.47 7.78 -2.91 -0.02 3.45 16 17 C 0.03 1.54 5.42 84.66 0.46 2.00 16 18 N -0.90 -54.83 12.94 21.45 0.28 -54.55 16 19 Si 0.96 45.16 29.54 68.60 2.03 47.18 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 O -0.37 -19.23 8.23 -148.98 -1.23 -20.46 16 24 H 0.05 1.88 6.73 -2.39 -0.02 1.86 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.03 1.28 7.73 -2.39 -0.02 1.27 16 27 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.07 1.61 6.12 -2.38 -0.01 1.59 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.64 6.15 -2.38 -0.01 1.62 16 31 H 0.14 3.18 6.21 -2.91 -0.02 3.16 16 32 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.13 3.43 8.06 -2.91 -0.02 3.40 16 35 H 0.09 4.17 7.25 -2.91 -0.02 4.15 16 36 H 0.09 2.66 6.42 -2.39 -0.02 2.64 16 37 H 0.08 2.61 6.53 -2.39 -0.02 2.59 16 38 H 0.05 2.40 8.05 -2.39 -0.02 2.38 16 39 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -68.30 311.27 5.32 -62.97 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 1.01 Total: 19.43 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 3.24 Total: -54.58 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -1.23 Total: -20.46 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.30 5.32 -62.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310401695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.699 kcal (2) G-P(sol) polarization free energy of solvation -68.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds