Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47238 * 119.99492 * 2 1 3 5 5 C 1.50700 * 109.98799 * 57.35169 * 4 2 1 6 6 C 1.38236 * 119.99869 * 29.34308 * 5 4 2 7 7 C 1.38235 * 119.99530 * 179.76528 * 6 5 4 8 8 C 1.38230 * 120.00400 * 0.50518 * 7 6 5 9 9 C 1.38243 * 119.99712 * 359.74665 * 8 7 6 10 10 C 1.38234 * 120.00146 * 0.02562 * 9 8 7 11 11 C 1.54103 * 109.87912 * 178.43511 * 4 2 1 12 12 C 1.54809 * 104.18796 * 117.39516 * 11 4 2 13 13 C 1.54996 * 102.09450 * 339.12134 * 12 11 4 14 14 H 1.08996 * 110.61734 * 278.52513 * 13 12 11 15 15 C 1.50695 * 110.75459 * 155.58773 * 13 12 11 16 16 H 1.08000 * 120.00251 * 4.39316 * 15 13 12 17 17 C 1.37881 * 119.99926 * 184.40032 * 15 13 12 18 18 N 1.31510 * 120.00088 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99990 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47392 * 59.99717 * 19 17 15 21 21 H 1.48499 * 109.47221 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46998 * 299.99544 * 19 17 15 23 23 O 1.43743 * 109.88143 * 296.26566 * 4 2 1 24 24 H 1.08998 * 109.47379 * 299.99672 * 1 2 3 25 25 H 1.08997 * 109.47473 * 60.00199 * 1 2 3 26 26 H 1.08998 * 109.46789 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47379 * 240.00328 * 2 1 3 28 28 H 1.08995 * 109.47035 * 173.21066 * 3 2 1 29 29 H 1.08999 * 109.46832 * 293.20853 * 3 2 1 30 30 H 1.09000 * 109.47253 * 53.20414 * 3 2 1 31 31 H 1.08001 * 120.00352 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.99996 * 180.23518 * 7 6 5 33 33 H 1.08004 * 120.00572 * 179.72427 * 8 7 6 34 34 H 1.08004 * 119.99401 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.99755 * 179.97438 * 10 9 8 36 36 H 1.08998 * 110.49090 * 236.07406 * 11 4 2 37 37 H 1.08997 * 110.48732 * 358.71944 * 11 4 2 38 38 H 1.08999 * 110.91268 * 220.92082 * 12 11 4 39 39 H 1.09002 * 110.90668 * 97.31627 * 12 11 4 40 40 H 0.97002 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.4914 -2.1240 1.2943 6 6 1.1971 -2.7891 0.1188 7 6 0.6985 -4.0778 0.1601 8 6 0.4842 -4.6974 1.3770 9 6 0.7736 -4.0302 2.5527 10 6 1.2767 -2.7434 2.5114 11 6 3.5805 -0.7610 1.2391 12 6 3.9893 0.0493 2.4933 13 6 2.7192 0.8965 2.7608 14 1 2.7011 1.7751 2.1159 15 6 2.6435 1.3024 4.2101 16 1 3.4525 1.0577 4.8824 17 6 1.5414 1.9862 4.6778 18 7 0.5564 2.2846 3.8591 19 14 1.4478 2.4900 6.4741 20 1 2.5885 3.3841 6.7976 21 1 0.1715 3.2078 6.7211 22 1 1.5092 1.2791 7.3317 23 8 1.6390 -0.0014 2.4271 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1231 1.4450 0.1215 29 1 1.7792 1.9201 -0.9445 30 1 1.5807 1.9903 0.8229 31 1 1.3600 -2.3033 -0.8319 32 1 0.4721 -4.5989 -0.7584 33 1 0.0905 -5.7026 1.4094 34 1 0.6058 -4.5143 3.5035 35 1 1.5024 -2.2221 3.4300 36 1 3.9361 -1.7884 1.3161 37 1 3.9684 -0.2886 0.3367 38 1 4.8460 0.6889 2.2811 39 1 4.1988 -0.6132 3.3331 40 1 -0.2191 2.7653 4.1882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310401696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = -27.161122 kcal Electronic energy + Delta-G solvation = -20652.518681 eV Core-core repulsion = 17817.830647 eV Total energy + Delta-G solvation = -2834.688033 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.93078 -37.78827 -34.11416 -32.35941 -30.97632 -30.84412 -30.37111 -27.65311 -26.36264 -24.71896 -22.28507 -22.05253 -20.91618 -20.05252 -18.65038 -16.98866 -16.28659 -15.42140 -14.98458 -14.57201 -14.30538 -14.01620 -13.64950 -13.32797 -13.01685 -12.75587 -12.44992 -12.11629 -11.81647 -11.73758 -11.54498 -11.24118 -10.92243 -10.87023 -10.75365 -10.60915 -10.58886 -10.46783 -10.11781 -10.05511 -9.80705 -9.47933 -9.04061 -8.57732 -8.47878 -8.22801 -7.82920 -6.00375 -4.11759 1.76744 1.84144 3.32356 3.37364 3.39567 4.20106 4.42856 4.95770 5.17942 5.29208 5.30866 5.42689 5.47017 5.53374 5.64725 5.77878 5.83197 5.89093 5.96213 6.06489 6.24537 6.28399 6.31588 6.37814 6.41724 6.51631 6.57807 6.61278 6.67879 6.70343 6.83769 6.84879 6.88303 7.01356 7.05929 7.18974 7.22252 7.44586 7.60157 7.90634 8.27334 8.61249 9.00042 9.57966 11.06887 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.007537 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.778370 B = 3714.096869 C = 4199.953948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.152 4.152 4 C 0.136 3.864 5 C -0.055 4.055 6 C -0.119 4.119 7 C -0.131 4.131 8 C -0.134 4.134 9 C -0.127 4.127 10 C -0.091 4.091 11 C -0.142 4.142 12 C -0.148 4.148 13 C 0.201 3.799 14 H 0.041 0.959 15 C -0.532 4.532 16 H 0.061 0.939 17 C 0.080 3.920 18 N -0.860 5.860 19 Si 0.888 3.112 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 O -0.331 6.331 24 H 0.073 0.927 25 H 0.039 0.961 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -8.436 -7.683 11.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.209 4.209 4 C 0.095 3.905 5 C -0.055 4.055 6 C -0.137 4.137 7 C -0.149 4.149 8 C -0.152 4.152 9 C -0.145 4.145 10 C -0.109 4.109 11 C -0.180 4.180 12 C -0.186 4.186 13 C 0.146 3.854 14 H 0.059 0.941 15 C -0.570 4.570 16 H 0.079 0.921 17 C -0.126 4.126 18 N -0.496 5.496 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.202 1.202 23 O -0.250 6.250 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.151 0.849 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.102 -8.356 -7.589 11.342 hybrid contribution 0.023 0.186 0.817 0.838 sum 1.126 -8.171 -6.771 10.672 Atomic orbital electron populations 1.21809 0.95019 1.01271 1.01909 1.21448 0.96615 0.96621 0.96620 1.22074 1.00776 0.96183 1.01832 1.20737 0.92070 0.88124 0.89569 1.19966 0.97259 0.95281 0.92990 1.21031 1.00006 0.94689 0.97932 1.20981 1.01197 0.95328 0.97432 1.21017 1.01693 0.99615 0.92854 1.21146 1.00235 0.95300 0.97858 1.21207 0.96931 0.93878 0.98843 1.22986 0.95402 1.00215 0.99380 1.23221 1.00698 0.98872 0.95841 1.20939 0.80120 0.88253 0.96044 0.94135 1.20964 1.04914 1.36752 0.94322 0.92070 1.25019 0.95483 0.94753 0.97349 1.70002 1.07221 1.37754 1.34590 0.86740 0.77283 0.78737 0.85661 1.20200 1.21243 1.20193 1.89298 1.42278 1.54091 1.39315 0.90770 0.94185 0.93212 0.92459 0.93079 0.94238 0.89618 0.86287 0.86819 0.86950 0.86636 0.84903 0.92236 0.91617 0.92426 0.91928 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.69 37.16 0.32 -2.27 16 2 C -0.09 -1.69 1.66 -90.62 -0.15 -1.84 16 3 C -0.15 -2.79 7.45 37.16 0.28 -2.51 16 4 C 0.14 2.67 0.64 -91.20 -0.06 2.61 16 5 C -0.05 -1.00 3.91 -104.62 -0.41 -1.41 16 6 C -0.12 -1.86 7.57 -39.58 -0.30 -2.16 16 7 C -0.13 -1.85 10.05 -39.59 -0.40 -2.24 16 8 C -0.13 -1.88 10.05 -39.58 -0.40 -2.28 16 9 C -0.13 -2.01 10.05 -39.58 -0.40 -2.40 16 10 C -0.09 -1.69 9.36 -39.58 -0.37 -2.06 16 11 C -0.14 -2.59 5.66 -25.20 -0.14 -2.73 16 12 C -0.15 -3.06 6.55 -24.72 -0.16 -3.22 16 13 C 0.20 4.96 2.37 -26.83 -0.06 4.89 16 14 H 0.04 1.05 5.05 -51.93 -0.26 0.79 16 15 C -0.53 -14.55 8.84 -34.44 -0.30 -14.85 16 16 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 17 C 0.08 2.21 5.42 -17.82 -0.10 2.11 16 18 N -0.86 -24.64 12.95 55.43 0.72 -23.92 16 19 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 O -0.33 -8.07 8.36 -35.23 -0.29 -8.37 16 24 H 0.07 1.61 7.80 -51.93 -0.41 1.20 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.87 5.94 -51.93 -0.31 0.56 16 27 H 0.06 0.90 6.72 -51.93 -0.35 0.55 16 28 H 0.05 0.90 6.00 -51.93 -0.31 0.59 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.90 6.34 -51.93 -0.33 1.57 16 31 H 0.12 1.70 6.22 -52.49 -0.33 1.37 16 32 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 35 H 0.13 2.76 7.48 -52.49 -0.39 2.37 16 36 H 0.06 1.03 7.69 -51.93 -0.40 0.63 16 37 H 0.07 1.08 6.57 -51.93 -0.34 0.74 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.31 8.05 -51.93 -0.42 0.89 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 308.97 15.07 4.66 4.66 Total: -1.00 -28.70 308.97 -8.52 -37.21 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.92 Total: 4.68 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: -2.65 Total: -30.39 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.72 Total: -23.92 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.29 Total: -8.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.70 -8.52 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310401696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.053 kcal (2) G-P(sol) polarization free energy of solvation -28.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds