Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47238 * 119.99492 * 2 1 3 5 5 C 1.50700 * 109.98799 * 57.35169 * 4 2 1 6 6 C 1.38236 * 119.99869 * 29.34308 * 5 4 2 7 7 C 1.38235 * 119.99530 * 179.76528 * 6 5 4 8 8 C 1.38230 * 120.00400 * 0.50518 * 7 6 5 9 9 C 1.38243 * 119.99712 * 359.74665 * 8 7 6 10 10 C 1.38234 * 120.00146 * 0.02562 * 9 8 7 11 11 C 1.54103 * 109.87912 * 178.43511 * 4 2 1 12 12 C 1.54809 * 104.18796 * 117.39516 * 11 4 2 13 13 C 1.54996 * 102.09450 * 339.12134 * 12 11 4 14 14 H 1.08996 * 110.61734 * 278.52513 * 13 12 11 15 15 C 1.50695 * 110.75459 * 155.58773 * 13 12 11 16 16 H 1.08000 * 120.00251 * 4.39316 * 15 13 12 17 17 C 1.37881 * 119.99926 * 184.40032 * 15 13 12 18 18 N 1.31510 * 120.00088 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99990 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47392 * 59.99717 * 19 17 15 21 21 H 1.48499 * 109.47221 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46998 * 299.99544 * 19 17 15 23 23 O 1.43743 * 109.88143 * 296.26566 * 4 2 1 24 24 H 1.08998 * 109.47379 * 299.99672 * 1 2 3 25 25 H 1.08997 * 109.47473 * 60.00199 * 1 2 3 26 26 H 1.08998 * 109.46789 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47379 * 240.00328 * 2 1 3 28 28 H 1.08995 * 109.47035 * 173.21066 * 3 2 1 29 29 H 1.08999 * 109.46832 * 293.20853 * 3 2 1 30 30 H 1.09000 * 109.47253 * 53.20414 * 3 2 1 31 31 H 1.08001 * 120.00352 * 359.97438 * 6 5 4 32 32 H 1.08000 * 119.99996 * 180.23518 * 7 6 5 33 33 H 1.08004 * 120.00572 * 179.72427 * 8 7 6 34 34 H 1.08004 * 119.99401 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.99755 * 179.97438 * 10 9 8 36 36 H 1.08998 * 110.49090 * 236.07406 * 11 4 2 37 37 H 1.08997 * 110.48732 * 358.71944 * 11 4 2 38 38 H 1.08999 * 110.91268 * 220.92082 * 12 11 4 39 39 H 1.09002 * 110.90668 * 97.31627 * 12 11 4 40 40 H 0.97002 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.4914 -2.1240 1.2943 6 6 1.1971 -2.7891 0.1188 7 6 0.6985 -4.0778 0.1601 8 6 0.4842 -4.6974 1.3770 9 6 0.7736 -4.0302 2.5527 10 6 1.2767 -2.7434 2.5114 11 6 3.5805 -0.7610 1.2391 12 6 3.9893 0.0493 2.4933 13 6 2.7192 0.8965 2.7608 14 1 2.7011 1.7751 2.1159 15 6 2.6435 1.3024 4.2101 16 1 3.4525 1.0577 4.8824 17 6 1.5414 1.9862 4.6778 18 7 0.5564 2.2846 3.8591 19 14 1.4478 2.4900 6.4741 20 1 2.5885 3.3841 6.7976 21 1 0.1715 3.2078 6.7211 22 1 1.5092 1.2791 7.3317 23 8 1.6390 -0.0014 2.4271 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1231 1.4450 0.1215 29 1 1.7792 1.9201 -0.9445 30 1 1.5807 1.9903 0.8229 31 1 1.3600 -2.3033 -0.8319 32 1 0.4721 -4.5989 -0.7584 33 1 0.0905 -5.7026 1.4094 34 1 0.6058 -4.5143 3.5035 35 1 1.5024 -2.2221 3.4300 36 1 3.9361 -1.7884 1.3161 37 1 3.9684 -0.2886 0.3367 38 1 4.8460 0.6889 2.2811 39 1 4.1988 -0.6132 3.3331 40 1 -0.2191 2.7653 4.1882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310401696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = -41.924746 kcal Electronic energy + Delta-G solvation = -20653.158879 eV Core-core repulsion = 17817.830647 eV Total energy + Delta-G solvation = -2835.328232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.39888 -39.16363 -35.74695 -34.33675 -32.58795 -32.26912 -31.59977 -29.39540 -27.83573 -26.51205 -23.74619 -23.41231 -22.28777 -21.79136 -20.11132 -18.74860 -17.86943 -17.03015 -16.58194 -16.18332 -15.77165 -15.47203 -15.10539 -14.83131 -14.43867 -14.15359 -14.07969 -13.70005 -13.58124 -13.13136 -12.95252 -12.84630 -12.78926 -12.43816 -12.38281 -12.17373 -12.12338 -11.93150 -11.90127 -11.59621 -11.29788 -11.06207 -10.88984 -10.65294 -9.74709 -9.68457 -9.38656 -8.11207 -6.29341 0.55226 0.61124 1.39062 1.41039 1.48219 2.41291 2.94340 3.13957 3.64825 3.78605 3.99847 4.04948 4.19257 4.25592 4.28935 4.34894 4.38098 4.43064 4.65635 4.73846 4.79454 4.83619 4.88754 4.93593 5.03512 5.05937 5.07392 5.13079 5.21613 5.24903 5.31079 5.38954 5.50525 5.55916 5.66495 5.69221 5.76105 5.84730 5.94531 6.22925 6.26018 6.66244 7.08479 7.44224 8.95302 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.007537 C = 0.006665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.778370 B = 3714.096869 C = 4199.953948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.144 4.144 4 C 0.126 3.874 5 C -0.075 4.075 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.123 4.123 11 C -0.132 4.132 12 C -0.144 4.144 13 C 0.197 3.803 14 H 0.023 0.977 15 C -0.555 4.555 16 H 0.057 0.943 17 C 0.030 3.970 18 N -0.891 5.891 19 Si 0.951 3.049 20 H -0.265 1.265 21 H -0.283 1.283 22 H -0.275 1.275 23 O -0.362 6.362 24 H 0.025 0.975 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.037 0.963 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -10.470 -9.727 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.202 4.202 4 C 0.085 3.915 5 C -0.075 4.075 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.145 4.145 9 C -0.150 4.150 10 C -0.142 4.142 11 C -0.169 4.169 12 C -0.181 4.181 13 C 0.142 3.858 14 H 0.040 0.960 15 C -0.593 4.593 16 H 0.075 0.925 17 C -0.173 4.173 18 N -0.528 5.528 19 Si 0.776 3.224 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.201 1.201 23 O -0.281 6.281 24 H 0.044 0.956 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.157 0.843 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.069 0.931 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.300 -10.395 -9.631 14.230 hybrid contribution -0.053 0.741 1.416 1.599 sum 1.247 -9.654 -8.215 12.737 Atomic orbital electron populations 1.21697 0.95431 1.01304 1.00603 1.21485 0.96233 0.96227 0.97107 1.21956 1.00623 0.96397 1.01174 1.21020 0.93033 0.88840 0.88566 1.19948 0.98863 0.94752 0.93948 1.21236 0.99668 0.95481 0.97413 1.21445 0.99077 0.94544 0.98943 1.21431 1.00214 1.00890 0.92002 1.21340 0.99751 0.94234 0.99713 1.21052 0.99828 0.95511 0.97776 1.22944 0.94600 1.00547 0.98821 1.23104 0.99467 0.98658 0.96912 1.20774 0.82160 0.88606 0.94264 0.95970 1.21394 1.04911 1.36937 0.96049 0.92500 1.25788 0.95191 0.94871 1.01419 1.70150 1.07654 1.38670 1.36296 0.85750 0.77574 0.78405 0.80680 1.19018 1.20877 1.20086 1.89215 1.42627 1.54452 1.41856 0.95586 0.91839 0.92452 0.88804 0.92641 0.91680 0.94349 0.84349 0.82992 0.83425 0.85285 0.88904 0.91117 0.89316 0.90951 0.93122 0.93233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.69 71.98 0.63 -4.14 16 2 C -0.09 -3.17 1.66 -10.79 -0.02 -3.19 16 3 C -0.14 -5.27 7.45 71.98 0.54 -4.74 16 4 C 0.13 4.94 0.64 -11.17 -0.01 4.93 16 5 C -0.07 -2.70 3.91 -19.87 -0.08 -2.78 16 6 C -0.12 -3.40 7.57 22.27 0.17 -3.23 16 7 C -0.12 -2.89 10.05 22.27 0.22 -2.67 16 8 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 9 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 10 C -0.12 -4.73 9.36 22.27 0.21 -4.52 16 11 C -0.13 -4.68 5.66 31.58 0.18 -4.50 16 12 C -0.14 -6.04 6.55 31.89 0.21 -5.83 16 13 C 0.20 10.18 2.37 30.53 0.07 10.25 16 14 H 0.02 1.23 5.05 -2.39 -0.01 1.22 16 15 C -0.56 -31.82 8.84 25.60 0.23 -31.59 16 16 H 0.06 3.19 7.78 -2.91 -0.02 3.16 16 17 C 0.03 1.73 5.42 84.66 0.46 2.18 16 18 N -0.89 -53.66 12.95 21.45 0.28 -53.38 16 19 Si 0.95 44.89 29.54 68.60 2.03 46.91 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 23 O -0.36 -18.59 8.36 -148.98 -1.25 -19.83 16 24 H 0.02 1.15 7.80 -2.39 -0.02 1.13 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.93 5.94 -2.39 -0.01 1.91 16 27 H 0.09 2.58 6.72 -2.39 -0.02 2.56 16 28 H 0.05 1.93 6.00 -2.39 -0.01 1.91 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.77 6.34 -2.39 -0.02 1.75 16 31 H 0.14 3.31 6.22 -2.91 -0.02 3.29 16 32 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 34 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.09 4.20 7.48 -2.91 -0.02 4.18 16 36 H 0.07 2.34 7.69 -2.39 -0.02 2.33 16 37 H 0.09 2.71 6.57 -2.39 -0.02 2.70 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.05 2.20 8.05 -2.39 -0.02 2.18 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -66.45 308.97 5.33 -61.12 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 1.02 Total: 21.71 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 3.25 Total: -56.53 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 0.28 Total: -53.38 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.25 Total: -19.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -66.45 5.33 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310401696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.196 kcal (2) G-P(sol) polarization free energy of solvation -66.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds