Wall clock time and date at job start Mon Mar 30 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47135 * 2 1 4 4 C 1.38236 * 119.99793 * 89.99988 * 3 2 1 5 5 C 1.38239 * 119.99753 * 179.97438 * 4 3 2 6 6 C 1.38242 * 119.99850 * 0.02562 * 5 4 3 7 7 C 1.50693 * 119.99926 * 179.97438 * 6 5 4 8 8 H 1.09005 * 110.27697 * 337.90730 * 7 6 5 9 9 C 1.54946 * 110.31204 * 99.99580 * 7 6 5 10 10 C 1.55307 * 100.93989 * 155.45758 * 9 7 6 11 11 C 1.54373 * 102.25551 * 325.86944 * 10 9 7 12 12 C 1.53004 * 109.83244 * 140.96156 * 11 10 9 13 13 C 1.50701 * 109.83079 * 261.84107 * 11 10 9 14 14 H 1.07990 * 120.00318 * 354.36131 * 13 11 10 15 15 C 1.37882 * 119.99750 * 174.35381 * 13 11 10 16 16 N 1.31512 * 119.99934 * 159.23858 * 15 13 11 17 17 Si 1.86801 * 120.00095 * 339.23262 * 15 13 11 18 18 H 1.48506 * 109.46983 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47002 * 60.00376 * 17 15 13 20 20 H 1.48497 * 109.47541 * 299.99948 * 17 15 13 21 21 O 1.43236 * 107.58924 * 21.35634 * 11 10 9 22 22 C 1.38233 * 119.99695 * 0.25249 * 6 5 4 23 23 C 1.38229 * 119.99995 * 269.97336 * 3 2 1 24 24 H 1.08996 * 109.47114 * 300.00374 * 1 2 3 25 25 H 1.08999 * 109.46884 * 60.00301 * 1 2 3 26 26 H 1.08995 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47114 * 239.99626 * 2 1 3 28 28 H 1.09006 * 109.46362 * 120.00067 * 2 1 3 29 29 H 1.07998 * 120.00109 * 359.97156 * 4 3 2 30 30 H 1.08000 * 120.00068 * 179.97438 * 5 4 3 31 31 H 1.08997 * 111.12204 * 37.54083 * 9 7 6 32 32 H 1.08998 * 111.16250 * 273.39587 * 9 7 6 33 33 H 1.09001 * 110.84761 * 207.67414 * 10 9 7 34 34 H 1.09005 * 110.84621 * 84.06181 * 10 9 7 35 35 H 1.08998 * 109.47414 * 174.49781 * 12 11 10 36 36 H 1.09002 * 109.46603 * 294.50082 * 12 11 10 37 37 H 1.08999 * 109.47321 * 54.49485 * 12 11 10 38 38 H 0.97003 * 120.00054 * 354.90888 * 16 15 13 39 39 H 1.08004 * 119.99692 * 179.73208 * 22 6 5 40 40 H 1.08004 * 119.99901 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7241 3.3756 1.1972 6 6 2.9545 4.0272 -0.0001 7 6 3.4568 5.4480 -0.0001 8 1 3.2201 5.9323 0.9473 9 6 4.9853 5.4780 -0.2523 10 6 5.1589 6.9049 -0.8405 11 6 3.8453 7.0966 -1.6284 12 6 3.3468 8.5339 -1.4646 13 6 4.0763 6.7991 -3.0876 14 1 5.0740 6.5915 -3.4450 15 6 3.0138 6.7919 -3.9663 16 7 3.2256 6.9423 -5.2555 17 14 1.2734 6.5682 -3.3256 18 1 0.3194 6.5979 -4.4633 19 1 0.9492 7.6663 -2.3798 20 1 1.1678 5.2635 -2.6243 21 8 2.8818 6.1822 -1.0927 22 6 2.7186 3.3774 -1.1971 23 6 2.2633 2.0722 -1.1971 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0823 1.5635 2.1325 30 1 2.9037 3.8848 2.1325 31 1 5.2792 4.7168 -0.9750 32 1 5.5401 5.3669 0.6793 33 1 6.0206 6.9477 -1.5066 34 1 5.2454 7.6447 -0.0446 35 1 2.4749 8.6907 -2.0997 36 1 3.0740 8.7073 -0.4236 37 1 4.1363 9.2275 -1.7537 38 1 4.1194 7.1319 -5.5813 39 1 2.8944 3.8880 -2.1325 40 1 2.0833 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310409086.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:41 Heat of formation + Delta-G solvation = -38.351394 kcal Electronic energy + Delta-G solvation = -19967.611872 eV Core-core repulsion = 17132.438592 eV Total energy + Delta-G solvation = -2835.173280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.56992 -38.24697 -34.33427 -32.81648 -31.29569 -30.87599 -30.52778 -28.70586 -25.41079 -24.48165 -22.90403 -22.36347 -21.27306 -19.96846 -19.25524 -17.57306 -16.19631 -15.84146 -15.02733 -14.69852 -14.15706 -13.78507 -13.61030 -13.48986 -13.03877 -12.99113 -12.63532 -12.61689 -12.48011 -12.29074 -11.77541 -11.52926 -11.14026 -11.06638 -11.02205 -10.87612 -10.53835 -10.27861 -10.15234 -10.12455 -9.91360 -9.40349 -9.07900 -8.54562 -8.38288 -8.21203 -7.99754 -6.41508 -4.13615 1.65245 1.79721 3.62994 3.64514 3.87716 4.09775 4.65656 4.82209 4.89632 4.98977 5.25478 5.29745 5.34259 5.37431 5.40539 5.48343 5.59730 5.63101 5.74296 5.81611 5.86160 5.96895 6.12780 6.16459 6.17705 6.19362 6.32682 6.38312 6.49033 6.55300 6.61227 6.70473 6.78793 6.83252 6.85312 6.96232 7.17640 7.39103 7.40840 8.09672 8.23936 8.39489 8.93109 9.59604 10.92828 Molecular weight = 260.15amu Principal moments of inertia in cm(-1) A = 0.022218 B = 0.007026 C = 0.005970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.910154 B = 3983.969265 C = 4689.027888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.081 4.081 3 C -0.093 4.093 4 C -0.127 4.127 5 C -0.115 4.115 6 C -0.080 4.080 7 C 0.122 3.878 8 H 0.061 0.939 9 C -0.136 4.136 10 C -0.132 4.132 11 C 0.196 3.804 12 C -0.144 4.144 13 C -0.605 4.605 14 H 0.060 0.940 15 C 0.048 3.952 16 N -0.897 5.897 17 Si 1.061 2.939 18 H -0.308 1.308 19 H -0.279 1.279 20 H -0.271 1.271 21 O -0.377 6.377 22 C -0.081 4.081 23 C -0.124 4.124 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.051 0.949 38 H 0.267 0.733 39 H 0.138 0.862 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.351 -9.291 12.698 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.145 4.145 5 C -0.134 4.134 6 C -0.080 4.080 7 C 0.064 3.936 8 H 0.078 0.922 9 C -0.174 4.174 10 C -0.169 4.169 11 C 0.158 3.842 12 C -0.202 4.202 13 C -0.641 4.641 14 H 0.078 0.922 15 C -0.159 4.159 16 N -0.530 5.530 17 Si 0.892 3.108 18 H -0.237 1.237 19 H -0.206 1.206 20 H -0.197 1.197 21 O -0.298 6.298 22 C -0.099 4.099 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.134 0.866 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.156 0.844 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.101 -9.464 12.134 15.698 hybrid contribution 1.910 0.251 0.549 2.003 sum -1.191 -9.212 12.683 15.721 Atomic orbital electron populations 1.21749 0.95011 1.01251 1.02368 1.20493 0.96004 0.93052 1.02329 1.19816 1.00102 0.96019 0.93370 1.20807 1.01717 0.94947 0.97054 1.20877 1.00308 0.94970 0.97199 1.20000 0.99111 0.95669 0.93212 1.21521 0.92165 0.88337 0.91606 0.92158 1.23122 0.95222 0.98677 1.00345 1.23052 1.00452 0.94830 0.98613 1.20176 0.83874 0.86317 0.93793 1.22272 1.01393 0.97844 0.98671 1.22006 0.96135 1.55367 0.90630 0.92214 1.25839 1.04929 0.91449 0.93722 1.70913 1.24860 1.42315 1.14896 0.83808 0.74493 0.78789 0.73727 1.23662 1.20628 1.19729 1.88340 1.39973 1.54496 1.46994 1.21330 0.95710 0.93578 0.99256 1.21055 1.00721 0.95142 0.97248 0.92672 0.92417 0.92751 0.91298 0.91491 0.86733 0.86552 0.90614 0.91812 0.91029 0.92882 0.92411 0.95394 0.92950 0.92319 0.84392 0.86454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.90 37.16 0.37 -1.13 16 2 C -0.08 -0.90 6.06 -27.88 -0.17 -1.07 16 3 C -0.09 -1.33 5.13 -104.63 -0.54 -1.86 16 4 C -0.13 -1.77 9.70 -39.58 -0.38 -2.15 16 5 C -0.12 -1.76 9.69 -39.58 -0.38 -2.14 16 6 C -0.08 -1.45 5.03 -104.63 -0.53 -1.98 16 7 C 0.12 2.33 3.64 -26.86 -0.10 2.23 16 8 H 0.06 1.05 8.06 -51.93 -0.42 0.64 16 9 C -0.14 -2.46 6.56 -24.48 -0.16 -2.62 16 10 C -0.13 -2.62 6.08 -24.79 -0.15 -2.77 16 11 C 0.20 4.61 0.78 -91.05 -0.07 4.54 16 12 C -0.14 -3.23 8.44 37.16 0.31 -2.91 16 13 C -0.60 -16.73 8.62 -34.44 -0.30 -17.02 16 14 H 0.06 1.77 7.70 -52.49 -0.40 1.36 16 15 C 0.05 1.38 5.25 -17.82 -0.09 1.29 16 16 N -0.90 -27.51 13.70 55.43 0.76 -26.75 16 17 Si 1.06 27.46 24.80 -169.99 -4.21 23.25 16 18 H -0.31 -8.11 7.11 56.52 0.40 -7.70 16 19 H -0.28 -6.96 5.90 56.52 0.33 -6.63 16 20 H -0.27 -6.81 6.25 56.52 0.35 -6.45 16 21 O -0.38 -8.77 5.96 -35.23 -0.21 -8.98 16 22 C -0.08 -1.57 9.14 -39.59 -0.36 -1.93 16 23 C -0.12 -2.04 9.70 -39.59 -0.38 -2.42 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.23 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.08 1.46 8.05 -51.93 -0.42 1.05 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.46 7.59 -51.93 -0.39 1.06 16 34 H 0.05 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.06 1.38 5.11 -51.93 -0.27 1.12 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.27 8.09 8.73 -40.82 -0.36 7.73 16 39 H 0.14 3.08 7.20 -52.48 -0.38 2.71 16 40 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 316.92 15.07 4.78 4.78 Total: -1.00 -30.31 316.92 -8.42 -38.73 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.60 Total: 0.93 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -2.93 Total: -31.95 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.76 Total: -26.75 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.21 Total: -8.98 kcal Atomic # 14 Polarization: 27.46 SS G_CDS: -4.21 Total: 23.25 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.31 -8.42 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310409086.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.379 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds